Wall clock time and date at job start Sat Apr 11 2020 03:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47129 * 299.99981 * 3 2 1 6 6 H 1.48504 * 109.47045 * 59.99488 * 3 2 1 7 7 C 1.38812 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99913 * 197.36408 * 7 2 1 9 9 N 1.36939 * 120.00123 * 17.37146 * 7 2 1 10 10 C 1.46919 * 120.63139 * 207.66750 * 9 7 2 11 11 C 1.53195 * 108.77831 * 233.62583 * 10 9 7 12 12 C 1.53035 * 109.30982 * 305.36620 * 11 10 9 13 13 N 1.46505 * 109.46071 * 181.38131 * 12 11 10 14 14 S 1.65590 * 120.00270 * 144.99576 * 13 12 11 15 15 O 1.42103 * 104.28039 * 308.93255 * 14 13 12 16 16 O 1.42105 * 104.28115 * 181.07394 * 14 13 12 17 17 C 1.81400 * 104.44901 * 65.00522 * 14 13 12 18 18 C 1.52997 * 109.47435 * 180.02562 * 17 14 13 19 19 H 1.09003 * 109.52290 * 304.87272 * 18 17 14 20 20 C 1.53180 * 109.52289 * 184.68748 * 18 17 14 21 21 C 1.53180 * 109.03389 * 183.11364 * 20 18 17 22 22 C 1.53088 * 109.16466 * 56.97835 * 21 20 18 23 23 O 1.42902 * 109.41685 * 302.38957 * 22 21 20 24 24 C 1.42904 * 114.09597 * 61.16109 * 23 22 21 25 25 C 1.53040 * 109.54166 * 61.36204 * 12 11 10 26 26 C 1.46929 * 120.63008 * 27.68770 * 9 7 2 27 27 H 0.96995 * 119.99671 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58718 * 113.84118 * 10 9 7 29 29 H 1.09003 * 109.70486 * 353.48481 * 10 9 7 30 30 H 1.08995 * 109.49614 * 185.41037 * 11 10 9 31 31 H 1.09001 * 109.51977 * 65.33116 * 11 10 9 32 32 H 1.08996 * 109.46440 * 301.35571 * 12 11 10 33 33 H 0.97006 * 119.99739 * 325.00484 * 13 12 11 34 34 H 1.09001 * 109.47113 * 59.99543 * 17 14 13 35 35 H 1.09006 * 109.47058 * 299.99958 * 17 14 13 36 36 H 1.09000 * 109.54007 * 302.97515 * 20 18 17 37 37 H 1.08994 * 109.54548 * 63.24957 * 20 18 17 38 38 H 1.08997 * 109.52214 * 297.06976 * 21 20 18 39 39 H 1.08998 * 109.57309 * 176.91706 * 21 20 18 40 40 H 1.09004 * 109.48304 * 182.40511 * 22 21 20 41 41 H 1.09004 * 109.49123 * 62.37840 * 22 21 20 42 42 H 1.08998 * 109.48194 * 178.86499 * 24 23 22 43 43 H 1.08991 * 109.48631 * 58.82118 * 24 23 22 44 44 H 1.09010 * 109.49576 * 58.58623 * 25 12 11 45 45 H 1.09001 * 109.50103 * 178.68016 * 25 12 11 46 46 H 1.09002 * 109.58671 * 246.16405 * 26 9 7 47 47 H 1.08999 * 109.58564 * 6.57962 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2797 9 7 1.3725 -2.3612 -0.3530 10 6 1.8195 -3.6547 0.1814 11 6 2.0753 -4.6098 -0.9887 12 6 0.8199 -4.6899 -1.8603 13 7 1.0497 -5.6279 -2.9620 14 16 -0.1913 -6.5736 -3.5167 15 8 -0.7193 -7.1814 -2.3457 16 8 0.3975 -7.3561 -4.5464 17 6 -1.3813 -5.3954 -4.2142 18 6 -2.5887 -6.1562 -4.7658 19 1 -2.2511 -6.9050 -5.4823 20 6 -3.5391 -5.1748 -5.4587 21 6 -4.7797 -5.9349 -5.9379 22 6 -5.4346 -6.6323 -4.7428 23 8 -4.4878 -7.5068 -4.1257 24 6 -3.3283 -6.8450 -3.6159 25 6 0.5018 -3.3048 -2.4281 26 6 0.2282 -2.3349 -1.2744 27 1 -0.4849 0.8400 -0.0004 28 1 1.0470 -4.0691 0.8292 29 1 2.7394 -3.5192 0.7503 30 1 2.3147 -5.6010 -0.6035 31 1 2.9093 -4.2400 -1.5851 32 1 -0.0193 -5.0364 -1.2574 33 1 1.9288 -5.6951 -3.3664 34 1 -0.9071 -4.8332 -5.0186 35 1 -1.7106 -4.7075 -3.4353 36 1 -3.8370 -4.3974 -4.7551 37 1 -3.0363 -4.7220 -6.3131 38 1 -4.4873 -6.6791 -6.6786 39 1 -5.4868 -5.2355 -6.3839 40 1 -6.2936 -7.2097 -5.0848 41 1 -5.7633 -5.8847 -4.0208 42 1 -2.6698 -7.5757 -3.1462 43 1 -3.6292 -6.1002 -2.8793 44 1 1.3506 -2.9468 -3.0109 45 1 -0.3788 -3.3671 -3.0675 46 1 -0.6741 -2.6416 -0.7453 47 1 0.0988 -1.3265 -1.6675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338985417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:09 Heat of formation + Delta-G solvation = -135.228457 kcal Electronic energy + Delta-G solvation = -28157.164082 eV Core-core repulsion = 24273.027743 eV Total energy + Delta-G solvation = -3884.136339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47321 -39.57654 -38.20143 -37.09739 -36.22542 -35.77023 -33.68817 -33.18270 -31.63837 -30.78428 -28.42377 -26.71606 -26.09518 -23.97979 -23.61764 -23.40075 -21.28758 -21.08826 -20.27271 -18.95995 -18.50933 -17.61010 -17.48531 -17.15029 -17.04811 -16.72647 -16.08690 -15.84009 -15.49366 -15.44059 -15.29115 -14.77657 -14.67966 -14.54155 -14.36584 -14.01518 -13.71842 -13.47373 -13.43369 -13.16657 -13.07568 -12.98511 -12.85503 -12.61021 -12.57480 -12.44402 -12.28673 -12.13418 -12.09500 -12.00396 -11.83147 -11.63633 -11.42155 -11.21757 -11.17560 -10.58914 -10.51367 -10.24329 -8.67084 -7.86063 -5.29740 -0.77793 1.47537 1.50928 1.60212 1.68428 2.53301 2.67392 2.80683 3.16179 3.29849 3.43797 3.53932 3.66797 3.69514 3.83731 3.98455 4.07432 4.08724 4.11740 4.27060 4.28858 4.37181 4.47155 4.52967 4.56463 4.62448 4.70752 4.74378 4.84615 4.88881 4.91901 5.00566 5.04577 5.11655 5.13578 5.18304 5.30666 5.31956 5.40183 5.52806 5.68191 5.78934 6.11354 6.14770 6.42005 7.17995 7.88672 8.39216 9.20628 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.003301 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.148108 B = 8480.324845 C = 9585.842174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.140 3.860 11 C -0.125 4.125 12 C 0.158 3.842 13 N -1.106 6.106 14 S 2.611 3.389 15 O -0.986 6.986 16 O -0.990 6.990 17 C -0.613 4.613 18 C -0.113 4.113 19 H 0.092 0.908 20 C -0.112 4.112 21 C -0.156 4.156 22 C 0.044 3.956 23 O -0.397 6.397 24 C 0.032 3.968 25 C -0.150 4.150 26 C 0.173 3.827 27 H 0.250 0.750 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.423 0.577 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.002 0.998 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -10.941 -13.116 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.013 3.987 11 C -0.166 4.166 12 C 0.051 3.949 13 N -0.865 5.865 14 S 2.708 3.292 15 O -0.976 6.976 16 O -0.980 6.980 17 C -0.745 4.745 18 C -0.134 4.134 19 H 0.111 0.889 20 C -0.150 4.150 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.316 6.316 24 C -0.045 4.045 25 C -0.191 4.191 26 C 0.047 3.953 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.259 0.741 34 H 0.186 0.814 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.020 0.980 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.992 -11.981 -12.930 18.964 hybrid contribution 0.572 1.955 0.103 2.040 sum -6.420 -10.026 -12.827 17.501 Atomic orbital electron populations 1.70172 1.06478 1.25715 1.55539 1.25707 0.95995 1.01203 1.01414 0.85283 0.78658 0.80239 0.76692 1.19308 1.21608 1.22270 1.19533 0.92991 0.86035 1.40448 0.91640 1.44362 1.36024 1.02097 1.50949 1.21044 0.97788 0.85803 0.94019 1.22148 0.97059 0.99883 0.97515 1.20701 0.99363 0.88111 0.86737 1.55428 1.26244 1.57657 1.47124 1.04726 0.75200 0.75421 0.73865 1.93561 1.80571 1.74816 1.48614 1.93555 1.76004 1.68253 1.60209 1.30665 1.12453 1.16546 1.14860 1.21604 0.94238 0.98740 0.98804 0.88928 1.21669 0.95218 0.96976 1.01174 1.22233 0.98006 1.00638 0.98453 1.22919 0.91651 0.94246 0.94408 1.87941 1.31135 1.35531 1.76994 1.23167 0.88244 0.98202 0.94922 1.22689 1.02280 0.95050 0.99036 1.20643 0.87894 0.97980 0.88825 0.94116 0.96534 0.92290 0.90144 0.91112 0.89937 0.74127 0.81420 0.83144 0.90583 0.89303 0.90884 0.88409 0.87202 0.92356 0.88933 0.91246 0.91491 0.89910 0.97966 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.69 11.19 21.65 0.24 -52.44 16 2 C -0.05 -2.55 4.91 84.86 0.42 -2.14 16 3 Si 0.96 43.21 29.59 68.60 2.03 45.24 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.26 -13.64 9.59 84.03 0.81 -12.83 16 8 H 0.07 3.38 7.89 -2.91 -0.02 3.35 16 9 N -0.61 -28.71 2.99 -699.10 -2.09 -30.80 16 10 C 0.14 5.41 6.51 86.36 0.56 5.98 16 11 C -0.13 -3.79 5.61 30.67 0.17 -3.62 16 12 C 0.16 4.48 2.65 45.02 0.12 4.60 16 13 N -1.11 -25.52 5.36 -169.28 -0.91 -26.42 16 14 S 2.61 62.58 5.09 -56.49 -0.29 62.29 16 15 O -0.99 -29.93 15.19 -127.65 -1.94 -31.87 16 16 O -0.99 -28.57 18.08 -127.65 -2.31 -30.88 16 17 C -0.61 -10.53 4.64 71.98 0.33 -10.20 16 18 C -0.11 -2.06 2.39 -10.70 -0.03 -2.08 16 19 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 20 C -0.11 -1.57 5.31 30.71 0.16 -1.41 16 21 C -0.16 -1.98 6.14 30.68 0.19 -1.80 16 22 C 0.04 0.69 6.84 72.01 0.49 1.18 16 23 O -0.40 -9.12 10.77 -148.98 -1.60 -10.72 16 24 C 0.03 0.71 5.73 72.01 0.41 1.12 16 25 C -0.15 -4.64 5.65 30.67 0.17 -4.47 16 26 C 0.17 7.53 5.31 86.36 0.46 7.99 16 27 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 2.24 7.94 -2.39 -0.02 2.22 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.46 7.48 -2.39 -0.02 2.44 16 33 H 0.42 8.38 8.80 -96.74 -0.85 7.53 16 34 H 0.17 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.15 2.40 6.79 -2.39 -0.02 2.39 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 2.34 5.78 -2.39 -0.01 2.32 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.08 2.00 5.75 -2.39 -0.01 1.99 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.06 3.01 6.03 -2.39 -0.01 3.00 16 Total: -1.00 -70.41 369.62 -2.49 -72.90 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.11 Total: 20.39 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.27 Total: -17.68 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -2.76 Total: -109.67 kcal Atomic # 8 Polarization: -67.62 SS G_CDS: -5.85 Total: -73.47 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 62.58 SS G_CDS: -0.29 Total: 62.29 kcal Total: -70.41 -2.49 -72.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338985417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.331 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds