Wall clock time and date at job start Sat Apr 11 2020 03:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48505 * 109.46870 * 274.06309 * 3 2 1 5 5 H 1.48496 * 109.47334 * 34.06501 * 3 2 1 6 6 H 1.48495 * 109.47418 * 154.06544 * 3 2 1 7 7 C 1.38813 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00563 * 197.50145 * 7 2 1 9 9 N 1.36941 * 119.99846 * 17.50783 * 7 2 1 10 10 C 1.46925 * 120.63151 * 207.96215 * 9 7 2 11 11 C 1.53192 * 108.77516 * 233.62590 * 10 9 7 12 12 C 1.53044 * 109.31411 * 305.36464 * 11 10 9 13 13 N 1.46496 * 109.46294 * 181.38170 * 12 11 10 14 14 S 1.65592 * 120.00161 * 144.99871 * 13 12 11 15 15 O 1.42098 * 104.27749 * 308.93241 * 14 13 12 16 16 O 1.42104 * 104.28075 * 181.07600 * 14 13 12 17 17 C 1.81397 * 104.45051 * 65.00327 * 14 13 12 18 18 C 1.52995 * 109.47572 * 179.97438 * 17 14 13 19 19 H 1.09003 * 109.57243 * 55.15566 * 18 17 14 20 20 C 1.53178 * 109.52421 * 175.31297 * 18 17 14 21 21 C 1.53182 * 109.03521 * 176.88540 * 20 18 17 22 22 C 1.53087 * 109.16626 * 303.02567 * 21 20 18 23 23 O 1.42901 * 109.41831 * 57.60473 * 22 21 20 24 24 C 1.42898 * 114.09966 * 298.84604 * 23 22 21 25 25 C 1.53044 * 109.53540 * 61.36461 * 12 11 10 26 26 C 1.46934 * 120.62839 * 27.97925 * 9 7 2 27 27 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58550 * 113.84345 * 10 9 7 29 29 H 1.08996 * 109.58829 * 353.41270 * 10 9 7 30 30 H 1.08996 * 109.49894 * 185.40976 * 11 10 9 31 31 H 1.09008 * 109.52434 * 65.33139 * 11 10 9 32 32 H 1.08996 * 109.45988 * 301.36100 * 12 11 10 33 33 H 0.97007 * 119.99637 * 325.00513 * 13 12 11 34 34 H 1.09006 * 109.47250 * 59.99873 * 17 14 13 35 35 H 1.09004 * 109.47235 * 300.00531 * 17 14 13 36 36 H 1.09000 * 109.54462 * 296.75453 * 20 18 17 37 37 H 1.08998 * 109.54074 * 56.93658 * 20 18 17 38 38 H 1.09005 * 109.52051 * 62.92590 * 21 20 18 39 39 H 1.08997 * 109.52210 * 183.11103 * 21 20 18 40 40 H 1.09006 * 109.48390 * 177.59239 * 22 21 20 41 41 H 1.09005 * 109.48146 * 297.62265 * 22 21 20 42 42 H 1.09004 * 109.47768 * 301.17252 * 24 23 22 43 43 H 1.08999 * 109.48603 * 181.14274 * 24 23 22 44 44 H 1.08999 * 109.50090 * 58.58472 * 25 12 11 45 45 H 1.09003 * 109.49548 * 178.68478 * 25 12 11 46 46 H 1.09006 * 109.58516 * 246.15767 * 26 9 7 47 47 H 1.09002 * 109.58771 * 6.58639 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4932 2.6263 0.7842 6 1 3.5880 1.4169 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2818 9 7 1.3732 -2.3608 -0.3557 10 6 1.8151 -3.6542 0.1831 11 6 2.0771 -4.6110 -0.9842 12 6 0.8273 -4.6906 -1.8638 13 7 1.0628 -5.6301 -2.9629 14 16 -0.1758 -6.5748 -3.5245 15 8 -0.7120 -7.1805 -2.3562 16 8 0.4186 -7.3593 -4.5494 17 6 -1.3598 -5.3960 -4.2309 18 6 -2.5640 -6.1558 -4.7905 19 1 -2.9940 -6.7842 -4.0104 20 6 -3.6165 -5.1570 -5.2814 21 6 -4.7819 -5.9276 -5.9096 22 6 -4.2485 -6.8121 -7.0396 23 8 -3.2521 -7.6957 -6.5213 24 6 -2.1163 -7.0315 -5.9637 25 6 0.5146 -3.3057 -2.4353 26 6 0.2348 -2.3341 -1.2844 27 1 -0.4850 0.8400 -0.0004 28 1 1.0379 -4.0669 0.8264 29 1 2.7321 -3.5173 0.7561 30 1 2.3128 -5.6021 -0.5965 31 1 2.9155 -4.2430 -1.5758 32 1 -0.0163 -5.0353 -1.2658 33 1 1.9445 -5.6989 -3.3616 34 1 -0.8797 -4.8353 -5.0330 35 1 -1.6931 -4.7067 -3.4550 36 1 -3.9806 -4.5678 -4.4397 37 1 -3.1724 -4.4953 -6.0249 38 1 -5.2566 -6.5513 -5.1522 39 1 -5.5100 -5.2230 -6.3113 40 1 -5.0669 -7.3949 -7.4623 41 1 -3.8099 -6.1850 -7.8159 42 1 -1.6499 -6.4073 -6.7259 43 1 -1.3987 -7.7724 -5.6113 44 1 1.3675 -2.9494 -3.0129 45 1 -0.3619 -3.3677 -3.0802 46 1 -0.6712 -2.6391 -0.7607 47 1 0.1092 -1.3260 -1.6796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338985419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:12 Heat of formation + Delta-G solvation = -112.070251 kcal Electronic energy + Delta-G solvation = -28034.885045 eV Core-core repulsion = 24151.752921 eV Total energy + Delta-G solvation = -3883.132124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74765 -38.14734 -37.08080 -35.98674 -34.99830 -34.69257 -32.52112 -31.96049 -30.15115 -29.20113 -27.63142 -25.39310 -24.91314 -22.99778 -22.23349 -21.99487 -20.54308 -19.74309 -19.11117 -17.68835 -17.03654 -16.68416 -16.51218 -16.28610 -15.92995 -15.28278 -14.98644 -14.87513 -14.61367 -14.04603 -13.74723 -13.62704 -13.30615 -13.16395 -13.11525 -13.04591 -12.89923 -12.53815 -12.13097 -12.03315 -11.97459 -11.68785 -11.54900 -11.46973 -11.42822 -11.12520 -11.07268 -10.80930 -10.76419 -10.63953 -10.42571 -10.27771 -10.24827 -9.89138 -9.79111 -9.67750 -9.09738 -8.53565 -6.77695 -5.87370 -3.29412 0.22272 2.72122 3.32474 3.40325 3.41365 3.50038 3.66628 4.06878 4.21619 4.39240 4.40962 4.43079 4.58414 4.72521 4.87934 4.96330 5.03548 5.11448 5.25755 5.27740 5.29978 5.38186 5.42099 5.44408 5.53425 5.55176 5.60946 5.64234 5.67098 5.77975 5.93382 5.97016 6.15313 6.32982 6.39941 6.48525 6.61903 6.72417 6.85309 6.87506 7.06721 7.24465 7.51643 7.72926 8.36433 9.12715 9.75751 10.31926 11.21517 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.003134 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.338677 B = 8930.818463 C =10082.434015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.133 4.133 12 C 0.150 3.850 13 N -1.113 6.113 14 S 2.606 3.394 15 O -0.954 6.954 16 O -0.965 6.965 17 C -0.629 4.629 18 C -0.112 4.112 19 H 0.094 0.906 20 C -0.111 4.111 21 C -0.159 4.159 22 C 0.055 3.945 23 O -0.375 6.375 24 C 0.040 3.960 25 C -0.162 4.162 26 C 0.171 3.829 27 H 0.254 0.746 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.415 0.585 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.021 0.979 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -11.108 -12.690 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.174 4.174 12 C 0.044 3.956 13 N -0.872 5.872 14 S 2.699 3.301 15 O -0.944 6.944 16 O -0.955 6.955 17 C -0.758 4.758 18 C -0.132 4.132 19 H 0.112 0.888 20 C -0.149 4.149 21 C -0.197 4.197 22 C -0.022 4.022 23 O -0.293 6.293 24 C -0.037 4.037 25 C -0.203 4.203 26 C 0.044 3.956 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.410 -12.093 -12.524 18.553 hybrid contribution 0.595 2.042 -0.322 2.151 sum -5.814 -10.052 -12.846 17.317 Atomic orbital electron populations 1.70023 1.05262 1.25579 1.53796 1.25043 0.95292 0.98473 1.00779 0.86268 0.79218 0.83657 0.77585 1.21503 1.21764 1.20358 1.19211 0.92842 0.84787 1.41461 0.91518 1.44087 1.36304 1.01565 1.49499 1.20921 0.98204 0.86583 0.92544 1.22288 0.96507 0.99971 0.98657 1.20961 0.99868 0.88380 0.86414 1.55695 1.25187 1.58505 1.47796 1.05021 0.75183 0.75224 0.74657 1.93611 1.80255 1.73537 1.47028 1.93572 1.75078 1.66885 1.59988 1.30802 1.13682 1.17606 1.13692 1.21567 0.94738 0.97628 0.99312 0.88761 1.21607 0.94881 0.97070 1.01345 1.22240 0.98413 0.99599 0.99406 1.22660 0.91474 0.93139 0.94931 1.87978 1.30126 1.32990 1.78225 1.23130 0.88645 0.97213 0.94663 1.22883 1.00771 0.95853 1.00838 1.20785 0.89001 0.98219 0.87602 0.93588 0.95947 0.92193 0.92176 0.91625 0.89648 0.75134 0.84523 0.83824 0.90485 0.91148 0.90677 0.90407 0.88670 0.92997 0.91890 0.87354 0.91602 0.93116 0.96067 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 11.22 55.49 0.62 -24.44 16 2 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 3 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.63 9.58 -15.06 -0.14 -6.78 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -13.92 2.99 -172.31 -0.52 -14.43 16 10 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 11 C -0.13 -2.14 5.61 -26.61 -0.15 -2.29 16 12 C 0.15 2.29 2.65 -67.89 -0.18 2.11 16 13 N -1.11 -14.11 5.36 -4.86 -0.03 -14.14 16 14 S 2.61 33.30 5.09 -107.50 -0.55 32.76 16 15 O -0.95 -15.55 17.39 -57.54 -1.00 -16.55 16 16 O -0.97 -13.80 15.88 -57.54 -0.91 -14.71 16 17 C -0.63 -6.27 4.64 37.16 0.17 -6.10 16 18 C -0.11 -1.13 2.39 -90.48 -0.22 -1.35 16 19 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.11 -0.95 5.31 -26.55 -0.14 -1.09 16 21 C -0.16 -1.22 6.14 -26.59 -0.16 -1.38 16 22 C 0.05 0.45 6.84 37.20 0.25 0.70 16 23 O -0.37 -4.25 10.77 -35.23 -0.38 -4.63 16 24 C 0.04 0.44 5.73 37.21 0.21 0.65 16 25 C -0.16 -2.68 5.65 -26.61 -0.15 -2.83 16 26 C 0.17 3.72 5.31 -3.71 -0.02 3.70 16 27 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.09 1.36 7.48 -51.93 -0.39 0.97 16 33 H 0.41 4.57 8.80 -34.47 -0.30 4.27 16 34 H 0.14 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.14 1.38 6.79 -51.92 -0.35 1.03 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.11 1.28 5.78 -51.93 -0.30 0.98 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.69 5.75 -51.93 -0.30 0.39 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -32.38 369.66 -10.69 -43.07 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.84 Total: 3.44 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.63 Total: -11.84 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.08 Total: -53.01 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -2.29 Total: -35.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: 33.30 SS G_CDS: -0.55 Total: 32.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.38 -10.69 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338985419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.998 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds