Wall clock time and date at job start Sat Apr 11 2020 03:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48505 * 109.46870 * 274.06309 * 3 2 1 5 5 H 1.48496 * 109.47334 * 34.06501 * 3 2 1 6 6 H 1.48495 * 109.47418 * 154.06544 * 3 2 1 7 7 C 1.38813 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00563 * 197.50145 * 7 2 1 9 9 N 1.36941 * 119.99846 * 17.50783 * 7 2 1 10 10 C 1.46925 * 120.63151 * 207.96215 * 9 7 2 11 11 C 1.53192 * 108.77516 * 233.62590 * 10 9 7 12 12 C 1.53044 * 109.31411 * 305.36464 * 11 10 9 13 13 N 1.46496 * 109.46294 * 181.38170 * 12 11 10 14 14 S 1.65592 * 120.00161 * 144.99871 * 13 12 11 15 15 O 1.42098 * 104.27749 * 308.93241 * 14 13 12 16 16 O 1.42104 * 104.28075 * 181.07600 * 14 13 12 17 17 C 1.81397 * 104.45051 * 65.00327 * 14 13 12 18 18 C 1.52995 * 109.47572 * 179.97438 * 17 14 13 19 19 H 1.09003 * 109.57243 * 55.15566 * 18 17 14 20 20 C 1.53178 * 109.52421 * 175.31297 * 18 17 14 21 21 C 1.53182 * 109.03521 * 176.88540 * 20 18 17 22 22 C 1.53087 * 109.16626 * 303.02567 * 21 20 18 23 23 O 1.42901 * 109.41831 * 57.60473 * 22 21 20 24 24 C 1.42898 * 114.09966 * 298.84604 * 23 22 21 25 25 C 1.53044 * 109.53540 * 61.36461 * 12 11 10 26 26 C 1.46934 * 120.62839 * 27.97925 * 9 7 2 27 27 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58550 * 113.84345 * 10 9 7 29 29 H 1.08996 * 109.58829 * 353.41270 * 10 9 7 30 30 H 1.08996 * 109.49894 * 185.40976 * 11 10 9 31 31 H 1.09008 * 109.52434 * 65.33139 * 11 10 9 32 32 H 1.08996 * 109.45988 * 301.36100 * 12 11 10 33 33 H 0.97007 * 119.99637 * 325.00513 * 13 12 11 34 34 H 1.09006 * 109.47250 * 59.99873 * 17 14 13 35 35 H 1.09004 * 109.47235 * 300.00531 * 17 14 13 36 36 H 1.09000 * 109.54462 * 296.75453 * 20 18 17 37 37 H 1.08998 * 109.54074 * 56.93658 * 20 18 17 38 38 H 1.09005 * 109.52051 * 62.92590 * 21 20 18 39 39 H 1.08997 * 109.52210 * 183.11103 * 21 20 18 40 40 H 1.09006 * 109.48390 * 177.59239 * 22 21 20 41 41 H 1.09005 * 109.48146 * 297.62265 * 22 21 20 42 42 H 1.09004 * 109.47768 * 301.17252 * 24 23 22 43 43 H 1.08999 * 109.48603 * 181.14274 * 24 23 22 44 44 H 1.08999 * 109.50090 * 58.58472 * 25 12 11 45 45 H 1.09003 * 109.49548 * 178.68478 * 25 12 11 46 46 H 1.09006 * 109.58516 * 246.15767 * 26 9 7 47 47 H 1.09002 * 109.58771 * 6.58639 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4932 2.6263 0.7842 6 1 3.5880 1.4169 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2818 9 7 1.3732 -2.3608 -0.3557 10 6 1.8151 -3.6542 0.1831 11 6 2.0771 -4.6110 -0.9842 12 6 0.8273 -4.6906 -1.8638 13 7 1.0628 -5.6301 -2.9629 14 16 -0.1758 -6.5748 -3.5245 15 8 -0.7120 -7.1805 -2.3562 16 8 0.4186 -7.3593 -4.5494 17 6 -1.3598 -5.3960 -4.2309 18 6 -2.5640 -6.1558 -4.7905 19 1 -2.9940 -6.7842 -4.0104 20 6 -3.6165 -5.1570 -5.2814 21 6 -4.7819 -5.9276 -5.9096 22 6 -4.2485 -6.8121 -7.0396 23 8 -3.2521 -7.6957 -6.5213 24 6 -2.1163 -7.0315 -5.9637 25 6 0.5146 -3.3057 -2.4353 26 6 0.2348 -2.3341 -1.2844 27 1 -0.4850 0.8400 -0.0004 28 1 1.0379 -4.0669 0.8264 29 1 2.7321 -3.5173 0.7561 30 1 2.3128 -5.6021 -0.5965 31 1 2.9155 -4.2430 -1.5758 32 1 -0.0163 -5.0353 -1.2658 33 1 1.9445 -5.6989 -3.3616 34 1 -0.8797 -4.8353 -5.0330 35 1 -1.6931 -4.7067 -3.4550 36 1 -3.9806 -4.5678 -4.4397 37 1 -3.1724 -4.4953 -6.0249 38 1 -5.2566 -6.5513 -5.1522 39 1 -5.5100 -5.2230 -6.3113 40 1 -5.0669 -7.3949 -7.4623 41 1 -3.8099 -6.1850 -7.8159 42 1 -1.6499 -6.4073 -6.7259 43 1 -1.3987 -7.7724 -5.6113 44 1 1.3675 -2.9494 -3.0129 45 1 -0.3619 -3.3677 -3.0802 46 1 -0.6712 -2.6391 -0.7607 47 1 0.1092 -1.3260 -1.6796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338985419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:11 Heat of formation + Delta-G solvation = -135.423441 kcal Electronic energy + Delta-G solvation = -28035.897715 eV Core-core repulsion = 24151.752921 eV Total energy + Delta-G solvation = -3884.144794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47355 -39.58328 -38.20352 -37.10029 -36.22732 -35.77262 -33.69249 -33.18556 -31.64535 -30.78948 -28.42226 -26.71557 -26.09474 -23.97437 -23.62951 -23.40517 -21.25347 -21.12425 -20.27863 -18.96112 -18.51349 -17.64785 -17.49546 -17.06399 -17.05886 -16.72943 -16.12974 -15.80889 -15.62991 -15.41007 -15.26284 -14.78075 -14.61159 -14.57252 -14.35555 -14.01086 -13.71532 -13.53466 -13.40817 -13.17135 -13.14180 -12.93001 -12.83382 -12.59023 -12.58401 -12.44408 -12.29779 -12.14574 -12.09444 -12.01223 -11.84431 -11.64658 -11.42867 -11.23016 -11.17272 -10.58448 -10.51153 -10.24731 -8.67245 -7.86075 -5.30168 -0.78159 1.48663 1.50787 1.59116 1.68101 2.53228 2.68847 2.78955 3.16493 3.29568 3.41638 3.56568 3.66357 3.69052 3.83067 3.98051 4.06621 4.10097 4.11183 4.22373 4.30224 4.38972 4.45687 4.52301 4.55150 4.62797 4.70397 4.73105 4.84157 4.88498 4.90821 5.00430 5.04681 5.12942 5.13633 5.17667 5.30010 5.31199 5.39476 5.51965 5.68045 5.78124 6.12001 6.15991 6.41807 7.17760 7.88282 8.39252 9.20496 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.003134 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.338677 B = 8930.818463 C =10082.434015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.048 4.048 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.139 3.861 11 C -0.125 4.125 12 C 0.157 3.843 13 N -1.105 6.105 14 S 2.611 3.389 15 O -0.995 6.995 16 O -0.981 6.981 17 C -0.613 4.613 18 C -0.116 4.116 19 H 0.084 0.916 20 C -0.112 4.112 21 C -0.158 4.158 22 C 0.047 3.953 23 O -0.398 6.398 24 C 0.035 3.965 25 C -0.149 4.149 26 C 0.173 3.827 27 H 0.250 0.750 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.424 0.576 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.002 0.998 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -10.974 -14.450 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.013 3.987 11 C -0.166 4.166 12 C 0.050 3.950 13 N -0.864 5.864 14 S 2.708 3.292 15 O -0.985 6.985 16 O -0.971 6.971 17 C -0.745 4.745 18 C -0.136 4.136 19 H 0.103 0.897 20 C -0.151 4.151 21 C -0.195 4.195 22 C -0.029 4.029 23 O -0.317 6.317 24 C -0.042 4.042 25 C -0.190 4.190 26 C 0.047 3.953 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.260 0.740 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.020 0.980 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.211 -12.014 -14.279 19.668 hybrid contribution 0.496 1.940 0.217 2.015 sum -5.716 -10.074 -14.062 18.218 Atomic orbital electron populations 1.70164 1.06490 1.25789 1.55398 1.25724 0.96003 1.01256 1.01351 0.85311 0.78185 0.79908 0.77367 1.21209 1.22449 1.19550 1.19509 0.93027 0.86033 1.40537 0.91620 1.44359 1.36521 1.02134 1.50391 1.21052 0.97795 0.85819 0.94020 1.22151 0.97090 0.99866 0.97485 1.20698 0.99305 0.88165 0.86841 1.55415 1.26109 1.57550 1.47346 1.04726 0.75213 0.75452 0.73848 1.93562 1.80789 1.75113 1.49003 1.93553 1.75762 1.67880 1.59927 1.30652 1.12626 1.16558 1.14632 1.21615 0.95125 0.97971 0.98937 0.89744 1.21662 0.94686 0.96836 1.01872 1.22247 0.98455 0.99743 0.99080 1.22901 0.91303 0.93374 0.95352 1.87944 1.30804 1.34456 1.78517 1.23154 0.88587 0.97073 0.95350 1.22686 1.02336 0.94961 0.99026 1.20640 0.87988 0.97929 0.88777 0.94108 0.96596 0.92221 0.90195 0.90977 0.90249 0.74000 0.81626 0.82931 0.90207 0.89821 0.91424 0.88412 0.87309 0.91733 0.90300 0.88996 0.91370 0.89900 0.98022 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.76 11.22 21.65 0.24 -52.52 16 2 C -0.05 -2.56 4.90 84.86 0.42 -2.14 16 3 Si 0.96 43.25 29.59 68.60 2.03 45.28 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.26 -13.70 9.58 84.03 0.81 -12.90 16 8 H 0.07 3.38 7.89 -2.91 -0.02 3.36 16 9 N -0.61 -28.78 2.99 -699.07 -2.09 -30.88 16 10 C 0.14 5.43 6.52 86.36 0.56 5.99 16 11 C -0.13 -3.82 5.61 30.67 0.17 -3.64 16 12 C 0.16 4.52 2.65 45.02 0.12 4.64 16 13 N -1.11 -25.56 5.36 -169.28 -0.91 -26.47 16 14 S 2.61 62.85 5.09 -56.49 -0.29 62.57 16 15 O -0.99 -31.94 17.39 -127.65 -2.22 -34.16 16 16 O -0.98 -26.80 15.88 -127.65 -2.03 -28.83 16 17 C -0.61 -10.59 4.64 71.98 0.33 -10.26 16 18 C -0.12 -2.12 2.39 -10.70 -0.03 -2.15 16 19 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 20 C -0.11 -1.62 5.31 30.71 0.16 -1.46 16 21 C -0.16 -2.05 6.14 30.68 0.19 -1.86 16 22 C 0.05 0.66 6.84 72.01 0.49 1.16 16 23 O -0.40 -8.53 10.77 -148.98 -1.60 -10.13 16 24 C 0.04 0.71 5.73 72.01 0.41 1.12 16 25 C -0.15 -4.65 5.65 30.67 0.17 -4.48 16 26 C 0.17 7.57 5.31 86.36 0.46 8.03 16 27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.08 2.43 7.48 -2.39 -0.02 2.42 16 33 H 0.42 8.27 8.80 -96.74 -0.85 7.41 16 34 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.15 2.47 6.79 -2.39 -0.02 2.46 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 2.12 5.78 -2.39 -0.01 2.10 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 2.02 5.75 -2.39 -0.01 2.00 16 46 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 47 H 0.06 3.00 6.06 -2.39 -0.01 2.99 16 Total: -1.00 -70.61 369.66 -2.48 -73.09 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.11 Total: 19.99 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 4.27 Total: -17.94 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -2.76 Total: -109.86 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -5.85 Total: -73.12 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 62.85 SS G_CDS: -0.29 Total: 62.57 kcal Total: -70.61 -2.48 -73.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338985419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.333 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds