Wall clock time and date at job start Sat Apr 11 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48505 * 109.47067 * 240.00135 * 3 2 1 5 5 H 1.48497 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47335 * 120.00197 * 3 2 1 7 7 C 1.37875 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00252 * 181.97119 * 7 2 1 9 9 C 1.50705 * 119.99754 * 1.97269 * 7 2 1 10 10 C 1.53001 * 115.54757 * 84.65875 * 9 7 2 11 11 N 1.46494 * 109.47648 * 57.83416 * 10 9 7 12 12 C 1.34777 * 120.00184 * 185.19473 * 11 10 9 13 13 O 1.21344 * 119.99875 * 5.59625 * 12 11 10 14 14 C 1.49450 * 120.00108 * 185.59156 * 12 11 10 15 15 O 1.21350 * 119.99835 * 354.49293 * 14 12 11 16 16 N 1.34771 * 119.99875 * 174.48834 * 14 12 11 17 17 C 1.46503 * 119.99853 * 179.97438 * 16 14 12 18 18 H 1.09001 * 109.43083 * 325.00303 * 17 16 14 19 19 C 1.53025 * 109.38841 * 205.12786 * 17 16 14 20 20 C 1.53373 * 109.74643 * 168.22270 * 19 17 16 21 21 C 1.50954 * 108.20433 * 50.64726 * 20 19 17 22 22 N 1.30128 * 128.28354 * 163.16958 * 21 20 19 23 23 N 1.40309 * 108.12335 * 180.30726 * 22 21 20 24 24 H 0.97001 * 126.00892 * 179.97438 * 23 22 21 25 25 C 1.35204 * 107.99292 * 359.95205 * 23 22 21 26 26 C 1.34570 * 107.61649 * 359.96801 * 25 23 22 27 27 C 1.50880 * 128.32837 * 180.13026 * 26 25 23 28 28 C 1.52995 * 117.49787 * 230.32401 * 9 7 2 29 29 C 1.52991 * 117.49965 * 298.98466 * 9 7 2 30 30 H 0.96995 * 119.99876 * 5.01483 * 1 2 3 31 31 H 1.09005 * 109.46922 * 297.83341 * 10 9 7 32 32 H 1.08996 * 109.46830 * 177.83964 * 10 9 7 33 33 H 0.97006 * 119.99592 * 5.19412 * 11 10 9 34 34 H 0.96999 * 120.00318 * 0.02562 * 16 14 12 35 35 H 1.08999 * 109.42518 * 288.30607 * 19 17 16 36 36 H 1.08997 * 109.42673 * 48.14356 * 19 17 16 37 37 H 1.08999 * 109.71849 * 290.96876 * 20 19 17 38 38 H 1.09004 * 109.75405 * 170.34103 * 20 19 17 39 39 H 1.07996 * 126.19395 * 179.97438 * 25 23 22 40 40 H 1.08997 * 109.71765 * 43.75941 * 27 26 25 41 41 H 1.09002 * 109.75612 * 283.13548 * 27 26 25 42 42 H 1.09003 * 117.49787 * 215.00744 * 28 9 7 43 43 H 1.09003 * 117.50369 * 0.02562 * 28 9 7 44 44 H 1.09001 * 117.50086 * 359.97438 * 29 9 7 45 45 H 1.08998 * 117.49949 * 144.99681 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0316 9 6 1.2517 -2.4987 -0.0460 10 6 0.8519 -2.9815 -1.4418 11 7 2.0505 -3.1212 -2.2723 12 6 1.9330 -3.4350 -3.5778 13 8 0.8346 -3.5020 -4.0892 14 6 3.1555 -3.7002 -4.3955 15 8 4.2563 -3.5361 -3.9120 16 7 3.0352 -4.1218 -5.6699 17 6 4.2336 -4.3814 -6.4717 18 1 5.0121 -3.6677 -6.2018 19 6 3.8948 -4.2278 -7.9561 20 6 5.1864 -4.2053 -8.7828 21 6 6.0253 -5.3937 -8.3793 22 7 7.0305 -5.9235 -9.0134 23 7 7.4942 -7.0143 -8.2625 24 1 8.2354 -7.5944 -8.4973 25 6 6.7268 -7.1146 -7.1539 26 6 5.8140 -6.1269 -7.1997 27 6 4.7311 -5.8065 -6.1992 28 6 1.6179 -3.5621 0.9912 29 6 0.2941 -2.8024 1.1078 30 1 -0.4850 0.8368 -0.0734 31 1 0.1767 -2.2569 -1.8972 32 1 0.3501 -3.9458 -1.3627 33 1 2.9288 -2.9878 -1.8826 34 1 2.1553 -4.2528 -6.0566 35 1 3.2748 -5.0656 -8.2750 36 1 3.3503 -3.2960 -8.1091 37 1 5.7342 -3.2841 -8.5843 38 1 4.9457 -4.2686 -9.8441 39 1 6.8281 -7.8536 -6.3729 40 1 5.1343 -5.8683 -5.1884 41 1 3.9069 -6.5112 -6.3099 42 1 1.5738 -4.6056 0.6793 43 1 2.4030 -3.3179 1.7069 44 1 0.2089 -2.0587 1.9002 45 1 -0.6209 -3.3461 0.8727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340596799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:15 Heat of formation + Delta-G solvation = 19.187930 kcal Electronic energy + Delta-G solvation = -27822.358066 eV Core-core repulsion = 23841.766524 eV Total energy + Delta-G solvation = -3980.591542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76027 -40.26103 -38.41370 -36.95556 -36.70465 -34.02446 -33.16302 -32.05334 -31.97175 -30.57654 -28.39611 -26.93780 -25.47038 -24.83675 -23.34616 -21.56041 -21.29413 -21.13720 -19.99421 -19.57406 -19.08964 -17.94798 -17.86549 -16.69549 -16.06989 -15.68820 -15.58267 -15.38776 -14.83090 -14.66256 -14.57561 -14.07578 -13.84769 -13.72689 -13.63250 -13.25276 -13.09072 -12.83098 -12.73946 -12.38837 -12.24598 -11.89570 -11.61021 -11.38246 -11.28370 -11.14093 -10.95869 -10.92874 -10.67882 -10.54231 -10.25677 -9.67982 -9.62270 -9.25871 -9.16958 -9.07509 -8.69669 -8.51945 -8.41020 -8.11510 -6.08737 -4.17819 1.61072 1.82528 2.44528 2.54713 2.69795 3.29581 3.34586 3.37604 3.63377 3.99510 4.19657 4.37160 4.48012 4.49254 4.74990 4.87958 4.94736 5.06115 5.15899 5.20312 5.28670 5.33790 5.34483 5.42423 5.60188 5.68893 5.82934 5.89740 5.96371 5.96998 6.27175 6.29398 6.39525 6.40562 6.45593 6.67466 6.76121 6.98474 7.03337 7.07893 7.26404 7.35055 7.37805 7.49045 7.81334 7.89923 8.18925 8.31354 8.57529 8.84037 9.50113 10.99284 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.002406 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.948488 B =11634.853207 C =12028.235456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.023 3.977 10 C 0.159 3.841 11 N -0.664 5.664 12 C 0.495 3.505 13 O -0.540 6.540 14 C 0.511 3.489 15 O -0.518 6.518 16 N -0.704 5.704 17 C 0.147 3.853 18 H 0.095 0.905 19 C -0.125 4.125 20 C -0.034 4.034 21 C 0.081 3.919 22 N -0.290 5.290 23 N -0.486 5.486 24 H 0.439 0.561 25 C 0.064 3.936 26 C -0.229 4.229 27 C -0.052 4.052 28 C -0.211 4.211 29 C -0.142 4.142 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.413 0.587 34 H 0.412 0.588 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.177 0.823 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.579 -13.556 -15.648 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.022 3.978 10 C 0.037 3.963 11 N -0.313 5.313 12 C 0.274 3.726 13 O -0.419 6.419 14 C 0.292 3.708 15 O -0.392 6.392 16 N -0.358 5.358 17 C 0.042 3.958 18 H 0.113 0.887 19 C -0.163 4.163 20 C -0.074 4.074 21 C -0.088 4.088 22 N -0.112 5.112 23 N -0.194 5.194 24 H 0.283 0.717 25 C -0.082 4.082 26 C -0.241 4.241 27 C -0.091 4.091 28 C -0.248 4.248 29 C -0.180 4.180 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.194 0.806 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.150 -13.293 -16.555 23.533 hybrid contribution 0.377 0.443 0.663 0.883 sum 10.528 -12.850 -15.891 22.989 Atomic orbital electron populations 1.69974 1.05834 1.27107 1.48222 1.24972 0.94836 0.98973 0.94190 0.86699 0.79687 0.83119 0.78788 1.20098 1.21273 1.20157 1.20332 0.92406 0.88492 1.52542 0.92087 1.19018 0.99473 0.93669 0.85642 1.21159 0.85154 0.98571 0.91466 1.45821 1.12779 1.64931 1.07810 1.19929 0.88752 0.80129 0.83787 1.90712 1.27244 1.52611 1.71349 1.20508 0.90017 0.77506 0.82808 1.90753 1.27451 1.50013 1.71032 1.45805 1.10519 1.67253 1.12186 1.21037 0.87729 0.97086 0.89935 0.88731 1.21845 0.97479 1.03748 0.93234 1.20062 0.93329 0.93533 1.00446 1.22375 0.94906 0.97869 0.93616 1.76992 1.14704 1.00690 1.18811 1.46314 1.29288 1.26290 1.17523 0.71741 1.22074 0.93428 1.00519 0.92175 1.19986 1.03719 1.00623 0.99773 1.20375 0.95400 0.96011 0.97347 1.23062 1.00144 0.95557 1.06045 1.22477 0.91131 1.01315 1.03086 0.92800 0.90379 0.93939 0.75020 0.75175 0.90557 0.89729 0.89283 0.89299 0.80593 0.90274 0.90716 0.91598 0.90243 0.89495 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.06 12.72 55.43 0.71 -23.35 16 2 C 0.07 1.97 5.43 -17.82 -0.10 1.88 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.50 -12.90 8.38 -34.44 -0.29 -13.19 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.02 0.53 1.51 -155.66 -0.23 0.29 16 10 C 0.16 3.48 5.57 -4.04 -0.02 3.46 16 11 N -0.66 -13.18 5.37 -60.73 -0.33 -13.50 16 12 C 0.49 9.15 7.88 -11.58 -0.09 9.06 16 13 O -0.54 -10.84 16.46 5.50 0.09 -10.75 16 14 C 0.51 8.07 7.85 -11.59 -0.09 7.98 16 15 O -0.52 -9.22 16.15 5.50 0.09 -9.13 16 16 N -0.70 -8.38 5.07 -54.03 -0.27 -8.65 16 17 C 0.15 1.49 2.40 -67.72 -0.16 1.32 16 18 H 0.09 1.13 7.53 -51.93 -0.39 0.74 16 19 C -0.12 -0.94 5.32 -26.52 -0.14 -1.08 16 20 C -0.03 -0.27 6.31 -27.57 -0.17 -0.44 16 21 C 0.08 0.82 7.10 -82.34 -0.58 0.24 16 22 N -0.29 -3.14 12.68 33.75 0.43 -2.71 16 23 N -0.49 -3.87 7.37 30.35 0.22 -3.65 16 24 H 0.44 2.03 8.96 -182.44 -1.64 0.39 16 25 C 0.06 0.50 11.95 -17.36 -0.21 0.29 16 26 C -0.23 -2.21 5.89 -104.98 -0.62 -2.83 16 27 C -0.05 -0.50 5.85 -27.59 -0.16 -0.66 16 28 C -0.21 -4.32 9.94 -26.70 -0.27 -4.59 16 29 C -0.14 -3.18 9.26 -26.70 -0.25 -3.42 16 30 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 31 H 0.08 1.94 8.09 -51.93 -0.42 1.52 16 32 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.41 8.14 7.73 -40.82 -0.32 7.82 16 34 H 0.41 4.38 8.08 -40.82 -0.33 4.05 16 35 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -31.76 381.40 -9.43 -41.19 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.71 Total: 10.73 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.39 Total: -1.68 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.76 Total: -51.86 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.76 -9.43 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340596799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.377 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds