Wall clock time and date at job start Sat Apr 11 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48505 * 109.47067 * 240.00135 * 3 2 1 5 5 H 1.48497 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47335 * 120.00197 * 3 2 1 7 7 C 1.37875 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00252 * 181.97119 * 7 2 1 9 9 C 1.50705 * 119.99754 * 1.97269 * 7 2 1 10 10 C 1.53001 * 115.54757 * 84.65875 * 9 7 2 11 11 N 1.46494 * 109.47648 * 57.83416 * 10 9 7 12 12 C 1.34777 * 120.00184 * 185.19473 * 11 10 9 13 13 O 1.21344 * 119.99875 * 5.59625 * 12 11 10 14 14 C 1.49450 * 120.00108 * 185.59156 * 12 11 10 15 15 O 1.21350 * 119.99835 * 354.49293 * 14 12 11 16 16 N 1.34771 * 119.99875 * 174.48834 * 14 12 11 17 17 C 1.46503 * 119.99853 * 179.97438 * 16 14 12 18 18 H 1.09001 * 109.43083 * 325.00303 * 17 16 14 19 19 C 1.53025 * 109.38841 * 205.12786 * 17 16 14 20 20 C 1.53373 * 109.74643 * 168.22270 * 19 17 16 21 21 C 1.50954 * 108.20433 * 50.64726 * 20 19 17 22 22 N 1.30128 * 128.28354 * 163.16958 * 21 20 19 23 23 N 1.40309 * 108.12335 * 180.30726 * 22 21 20 24 24 H 0.97001 * 126.00892 * 179.97438 * 23 22 21 25 25 C 1.35204 * 107.99292 * 359.95205 * 23 22 21 26 26 C 1.34570 * 107.61649 * 359.96801 * 25 23 22 27 27 C 1.50880 * 128.32837 * 180.13026 * 26 25 23 28 28 C 1.52995 * 117.49787 * 230.32401 * 9 7 2 29 29 C 1.52991 * 117.49965 * 298.98466 * 9 7 2 30 30 H 0.96995 * 119.99876 * 5.01483 * 1 2 3 31 31 H 1.09005 * 109.46922 * 297.83341 * 10 9 7 32 32 H 1.08996 * 109.46830 * 177.83964 * 10 9 7 33 33 H 0.97006 * 119.99592 * 5.19412 * 11 10 9 34 34 H 0.96999 * 120.00318 * 0.02562 * 16 14 12 35 35 H 1.08999 * 109.42518 * 288.30607 * 19 17 16 36 36 H 1.08997 * 109.42673 * 48.14356 * 19 17 16 37 37 H 1.08999 * 109.71849 * 290.96876 * 20 19 17 38 38 H 1.09004 * 109.75405 * 170.34103 * 20 19 17 39 39 H 1.07996 * 126.19395 * 179.97438 * 25 23 22 40 40 H 1.08997 * 109.71765 * 43.75941 * 27 26 25 41 41 H 1.09002 * 109.75612 * 283.13548 * 27 26 25 42 42 H 1.09003 * 117.49787 * 215.00744 * 28 9 7 43 43 H 1.09003 * 117.50369 * 0.02562 * 28 9 7 44 44 H 1.09001 * 117.50086 * 359.97438 * 29 9 7 45 45 H 1.08998 * 117.49949 * 144.99681 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0316 9 6 1.2517 -2.4987 -0.0460 10 6 0.8519 -2.9815 -1.4418 11 7 2.0505 -3.1212 -2.2723 12 6 1.9330 -3.4350 -3.5778 13 8 0.8346 -3.5020 -4.0892 14 6 3.1555 -3.7002 -4.3955 15 8 4.2563 -3.5361 -3.9120 16 7 3.0352 -4.1218 -5.6699 17 6 4.2336 -4.3814 -6.4717 18 1 5.0121 -3.6677 -6.2018 19 6 3.8948 -4.2278 -7.9561 20 6 5.1864 -4.2053 -8.7828 21 6 6.0253 -5.3937 -8.3793 22 7 7.0305 -5.9235 -9.0134 23 7 7.4942 -7.0143 -8.2625 24 1 8.2354 -7.5944 -8.4973 25 6 6.7268 -7.1146 -7.1539 26 6 5.8140 -6.1269 -7.1997 27 6 4.7311 -5.8065 -6.1992 28 6 1.6179 -3.5621 0.9912 29 6 0.2941 -2.8024 1.1078 30 1 -0.4850 0.8368 -0.0734 31 1 0.1767 -2.2569 -1.8972 32 1 0.3501 -3.9458 -1.3627 33 1 2.9288 -2.9878 -1.8826 34 1 2.1553 -4.2528 -6.0566 35 1 3.2748 -5.0656 -8.2750 36 1 3.3503 -3.2960 -8.1091 37 1 5.7342 -3.2841 -8.5843 38 1 4.9457 -4.2686 -9.8441 39 1 6.8281 -7.8536 -6.3729 40 1 5.1343 -5.8683 -5.1884 41 1 3.9069 -6.5112 -6.3099 42 1 1.5738 -4.6056 0.6793 43 1 2.4030 -3.3179 1.7069 44 1 0.2089 -2.0587 1.9002 45 1 -0.6209 -3.3461 0.8727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340596799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:14 Heat of formation + Delta-G solvation = -3.175937 kcal Electronic energy + Delta-G solvation = -27823.327836 eV Core-core repulsion = 23841.766524 eV Total energy + Delta-G solvation = -3981.561312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44270 -41.57308 -39.78200 -38.43703 -37.91086 -35.28322 -34.43315 -33.95499 -32.80698 -31.26653 -29.31271 -28.45691 -27.36832 -25.73930 -24.48013 -22.91645 -22.41248 -21.95193 -21.39164 -21.16884 -20.06048 -19.21545 -18.55526 -18.05373 -17.77770 -16.89234 -16.76563 -16.61384 -16.23986 -16.17658 -15.58702 -15.55208 -15.02300 -14.77519 -14.59317 -14.41647 -14.30682 -13.92529 -13.71031 -13.65618 -13.46900 -13.05495 -12.96553 -12.91591 -12.81038 -12.65599 -12.39294 -12.07334 -11.99340 -11.87600 -11.42562 -11.39371 -10.97661 -10.66241 -10.40288 -10.35191 -10.27040 -10.13548 -9.85402 -9.36997 -8.10352 -6.22882 0.45046 0.96991 1.42655 1.42874 1.44556 1.50494 1.75466 2.01160 2.23908 2.42843 2.75489 3.18499 3.43321 3.53116 3.64898 3.78175 3.89034 4.04651 4.24021 4.25304 4.38949 4.47762 4.54050 4.59709 4.66675 4.69966 4.72444 4.76738 4.93395 4.97007 5.02828 5.04910 5.12277 5.18688 5.24861 5.31089 5.35776 5.41552 5.57288 5.69071 5.70206 5.77802 6.08590 6.37109 6.47454 6.53823 6.72768 6.83622 6.86710 7.07789 7.46819 8.96925 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.002406 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.948488 B =11634.853207 C =12028.235456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.057 0.943 9 C -0.003 4.003 10 C 0.174 3.826 11 N -0.668 5.668 12 C 0.495 3.505 13 O -0.557 6.557 14 C 0.518 3.482 15 O -0.540 6.540 16 N -0.682 5.682 17 C 0.145 3.855 18 H 0.076 0.924 19 C -0.115 4.115 20 C -0.033 4.033 21 C 0.070 3.930 22 N -0.324 5.324 23 N -0.479 5.479 24 H 0.452 0.548 25 C 0.075 3.925 26 C -0.255 4.255 27 C -0.043 4.043 28 C -0.181 4.181 29 C -0.149 4.149 30 H 0.259 0.741 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.414 0.586 34 H 0.421 0.579 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.209 0.791 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -14.946 -16.590 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.075 0.925 9 C -0.003 4.003 10 C 0.050 3.950 11 N -0.318 5.318 12 C 0.275 3.725 13 O -0.436 6.436 14 C 0.298 3.702 15 O -0.417 6.417 16 N -0.335 5.335 17 C 0.042 3.958 18 H 0.095 0.905 19 C -0.154 4.154 20 C -0.073 4.073 21 C -0.098 4.098 22 N -0.147 5.147 23 N -0.189 5.189 24 H 0.298 0.702 25 C -0.072 4.072 26 C -0.267 4.267 27 C -0.082 4.082 28 C -0.218 4.218 29 C -0.187 4.187 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.251 0.749 34 H 0.259 0.741 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.226 0.774 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.113 -14.706 -17.540 25.444 hybrid contribution 0.129 0.797 0.925 1.228 sum 11.242 -13.908 -16.615 24.411 Atomic orbital electron populations 1.70076 1.06885 1.27404 1.49666 1.25610 0.95502 1.01708 0.94397 0.85859 0.78547 0.79988 0.78717 1.20120 1.21338 1.19602 1.20620 0.92455 0.89845 1.51474 0.92471 1.19071 1.00507 0.94044 0.86707 1.20807 0.85346 0.98079 0.90739 1.45756 1.12096 1.65535 1.08381 1.20393 0.89543 0.79088 0.83456 1.90698 1.28266 1.53109 1.71574 1.19971 0.88456 0.78105 0.83683 1.90752 1.27641 1.51605 1.71709 1.45763 1.11809 1.65180 1.10751 1.21192 0.86327 0.97148 0.91178 0.90544 1.21800 0.97707 1.04875 0.90971 1.20131 0.93036 0.92894 1.01223 1.22725 0.94933 0.98361 0.93784 1.76930 1.15565 1.02060 1.20151 1.46372 1.29487 1.25772 1.17245 0.70179 1.22589 0.92133 1.00217 0.92231 1.20109 1.04790 1.01841 0.99999 1.20239 0.95786 0.95590 0.96618 1.23056 0.98565 0.96213 1.03938 1.22400 0.92580 1.01582 1.02153 0.93151 0.94000 0.92490 0.74914 0.74146 0.89259 0.88671 0.89211 0.87905 0.77411 0.91737 0.89754 0.88823 0.90065 0.91851 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.46 12.72 21.45 0.27 -50.19 16 2 C 0.03 1.54 5.43 84.65 0.46 2.00 16 3 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.51 -26.16 8.38 25.60 0.21 -25.95 16 8 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 9 C 0.00 -0.12 1.51 -52.93 -0.08 -0.20 16 10 C 0.17 7.59 5.57 86.38 0.48 8.07 16 11 N -0.67 -26.33 5.37 -464.42 -2.49 -28.82 16 12 C 0.49 18.05 7.88 87.27 0.69 18.74 16 13 O -0.56 -22.06 16.46 -3.23 -0.05 -22.11 16 14 C 0.52 15.95 7.85 87.27 0.69 16.63 16 15 O -0.54 -18.96 16.15 -3.25 -0.05 -19.01 16 16 N -0.68 -15.28 5.07 -443.21 -2.25 -17.53 16 17 C 0.15 2.75 2.40 45.13 0.11 2.86 16 18 H 0.08 1.78 7.53 -2.39 -0.02 1.76 16 19 C -0.12 -1.51 5.32 30.73 0.16 -1.34 16 20 C -0.03 -0.47 6.31 30.05 0.19 -0.28 16 21 C 0.07 1.33 7.10 43.44 0.31 1.64 16 22 N -0.32 -6.64 12.68 -47.13 -0.60 -7.23 16 23 N -0.48 -6.81 7.37 -57.88 -0.43 -7.23 16 24 H 0.45 3.38 8.96 -213.18 -1.91 1.47 16 25 C 0.07 1.01 11.95 83.33 1.00 2.01 16 26 C -0.26 -4.52 5.89 -20.10 -0.12 -4.63 16 27 C -0.04 -0.77 5.85 30.03 0.18 -0.59 16 28 C -0.18 -7.09 9.94 30.62 0.30 -6.79 16 29 C -0.15 -6.61 9.26 30.61 0.28 -6.32 16 30 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 31 H 0.04 2.12 8.09 -2.38 -0.02 2.10 16 32 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 33 H 0.41 16.19 7.73 -92.70 -0.72 15.48 16 34 H 0.42 8.16 8.08 -92.71 -0.75 7.41 16 35 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.26 381.40 -1.03 -69.29 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -2.32 Total: 32.04 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.86 Total: 5.83 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.49 Total: -111.00 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.11 Total: -41.12 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -68.26 -1.03 -69.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340596799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.115 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds