Wall clock time and date at job start Sat Apr 11 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47341 * 239.72744 * 3 2 1 5 5 H 1.48501 * 109.47182 * 359.73097 * 3 2 1 6 6 H 1.48510 * 109.47198 * 119.72584 * 3 2 1 7 7 C 1.37885 * 120.00208 * 179.72914 * 2 1 3 8 8 H 1.07994 * 119.99830 * 175.01291 * 7 2 1 9 9 C 1.50699 * 119.99534 * 355.01354 * 7 2 1 10 10 C 1.53002 * 115.54736 * 279.48026 * 9 7 2 11 11 N 1.46496 * 109.47362 * 294.91900 * 10 9 7 12 12 C 1.34777 * 120.00020 * 184.96282 * 11 10 9 13 13 O 1.21344 * 120.00020 * 5.05651 * 12 11 10 14 14 C 1.49456 * 119.99957 * 185.04996 * 12 11 10 15 15 O 1.21348 * 119.99621 * 5.05303 * 14 12 11 16 16 N 1.34770 * 119.99794 * 185.04495 * 14 12 11 17 17 C 1.46506 * 119.99664 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.43110 * 35.10074 * 17 16 14 19 19 C 1.53029 * 109.42862 * 155.00032 * 17 16 14 20 20 C 1.53366 * 109.74830 * 191.80365 * 19 17 16 21 21 C 1.50954 * 108.20593 * 309.35140 * 20 19 17 22 22 N 1.30124 * 128.28849 * 196.65048 * 21 20 19 23 23 N 1.40314 * 108.12571 * 179.86216 * 22 21 20 24 24 H 0.96996 * 126.01180 * 180.02562 * 23 22 21 25 25 C 1.35203 * 107.98867 * 0.03810 * 23 22 21 26 26 C 1.34569 * 107.62061 * 0.03972 * 25 23 22 27 27 C 1.50885 * 128.32678 * 179.70929 * 26 25 23 28 28 C 1.52999 * 117.49900 * 133.77557 * 9 7 2 29 29 C 1.52995 * 60.00135 * 252.50871 * 28 9 7 30 30 H 0.96998 * 120.00239 * 5.27277 * 1 2 3 31 31 H 1.08994 * 109.47281 * 54.92536 * 10 9 7 32 32 H 1.09002 * 109.46749 * 174.92314 * 10 9 7 33 33 H 0.97003 * 120.00215 * 4.96481 * 11 10 9 34 34 H 0.96994 * 120.00491 * 0.02562 * 16 14 12 35 35 H 1.08998 * 109.42462 * 311.89005 * 19 17 16 36 36 H 1.09000 * 109.42220 * 71.71741 * 19 17 16 37 37 H 1.08998 * 109.71925 * 69.02279 * 20 19 17 38 38 H 1.08997 * 109.71960 * 189.63299 * 20 19 17 39 39 H 1.08008 * 126.18616 * 180.02562 * 25 23 22 40 40 H 1.09003 * 109.71768 * 77.07146 * 27 26 25 41 41 H 1.08993 * 109.71841 * 316.42411 * 27 26 25 42 42 H 1.09010 * 117.49582 * 0.02562 * 28 9 7 43 43 H 1.08997 * 117.49880 * 145.01396 * 28 9 7 44 44 H 1.08999 * 117.49879 * 252.50828 * 29 28 9 45 45 H 1.08996 * 117.50189 * 107.48935 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7465 -0.0066 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0056 8 1 3.0815 -1.1962 -0.0757 9 6 1.2553 -2.4961 0.1252 10 6 0.8332 -2.8867 1.5431 11 7 2.0259 -3.1343 2.3569 12 6 1.8979 -3.5908 3.6186 13 8 0.8021 -3.8838 4.0496 14 6 3.1057 -3.7362 4.4868 15 8 4.1879 -3.3580 4.0889 16 7 2.9928 -4.2874 5.7114 17 6 4.1767 -4.4294 6.5627 18 1 4.8414 -3.5802 6.4041 19 6 3.7461 -4.4717 8.0305 20 6 4.9754 -4.3237 8.9356 21 6 6.0152 -5.3213 8.4858 22 7 7.0632 -5.7408 9.1331 23 7 7.7354 -6.6673 8.3216 24 1 8.5503 -7.1407 8.5511 25 6 7.0478 -6.7841 7.1634 26 6 5.9833 -5.9642 7.2371 27 6 4.9122 -5.7260 6.2014 28 6 1.6419 -3.6243 -0.8333 29 6 0.3185 -2.8801 -1.0218 30 1 -0.4850 0.8365 -0.0772 31 1 0.2531 -2.0769 1.9855 32 1 0.2252 -3.7906 1.5051 33 1 2.9077 -2.9698 1.9878 34 1 2.1279 -4.5899 6.0293 35 1 3.0503 -3.6563 8.2279 36 1 3.2562 -5.4232 8.2373 37 1 5.3748 -3.3130 8.8511 38 1 4.6965 -4.5235 9.9702 39 1 7.3064 -7.4203 6.3297 40 1 4.2096 -6.5594 6.2006 41 1 5.3684 -5.6279 5.2164 42 1 2.4385 -3.4248 -1.5501 43 1 1.5957 -4.6450 -0.4538 44 1 -0.5984 -3.4113 -0.7665 45 1 0.2440 -2.1909 -1.8630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340596801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:17 Heat of formation + Delta-G solvation = 18.969907 kcal Electronic energy + Delta-G solvation = -27804.670042 eV Core-core repulsion = 23824.069046 eV Total energy + Delta-G solvation = -3980.600997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76167 -40.27545 -38.43418 -36.96217 -36.71177 -34.03013 -33.16962 -32.05632 -31.99254 -30.58012 -28.40034 -26.95085 -25.48240 -24.83361 -23.35209 -21.57170 -21.29648 -21.14190 -20.00109 -19.57767 -19.09451 -17.94914 -17.86528 -16.70160 -16.12956 -15.70277 -15.57997 -15.38486 -14.83013 -14.67046 -14.56440 -14.13148 -13.87089 -13.63915 -13.61506 -13.32724 -13.11295 -12.88867 -12.69048 -12.39347 -12.24690 -11.84681 -11.63624 -11.38671 -11.28607 -11.14630 -10.98705 -10.94160 -10.68109 -10.54021 -10.26676 -9.68154 -9.63486 -9.26389 -9.17765 -9.07645 -8.69738 -8.54252 -8.38617 -8.17471 -6.08962 -4.18255 1.61018 1.80789 2.44427 2.54594 2.68695 3.29113 3.34232 3.37597 3.61390 3.98653 4.19023 4.36202 4.47730 4.48783 4.74572 4.87659 4.92713 5.05682 5.15602 5.19651 5.28400 5.33626 5.34197 5.42027 5.59822 5.68628 5.82513 5.89570 5.95673 5.96047 6.27658 6.28935 6.39200 6.40760 6.47888 6.66679 6.75935 6.98438 7.01602 7.06811 7.25875 7.33567 7.37698 7.46831 7.81416 7.88855 8.17595 8.31465 8.54529 8.83599 9.49336 10.98387 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002398 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.315318 B =11675.770025 C =12020.177411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.024 3.976 10 C 0.159 3.841 11 N -0.666 5.666 12 C 0.494 3.506 13 O -0.541 6.541 14 C 0.510 3.490 15 O -0.517 6.517 16 N -0.704 5.704 17 C 0.146 3.854 18 H 0.095 0.905 19 C -0.124 4.124 20 C -0.034 4.034 21 C 0.081 3.919 22 N -0.290 5.290 23 N -0.486 5.486 24 H 0.439 0.561 25 C 0.064 3.936 26 C -0.229 4.229 27 C -0.052 4.052 28 C -0.209 4.209 29 C -0.145 4.145 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.414 0.586 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.177 0.823 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 -13.293 15.594 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.023 3.977 10 C 0.037 3.963 11 N -0.316 5.316 12 C 0.274 3.726 13 O -0.420 6.420 14 C 0.291 3.709 15 O -0.391 6.391 16 N -0.358 5.358 17 C 0.042 3.958 18 H 0.113 0.887 19 C -0.163 4.163 20 C -0.074 4.074 21 C -0.088 4.088 22 N -0.112 5.112 23 N -0.194 5.194 24 H 0.283 0.717 25 C -0.082 4.082 26 C -0.241 4.241 27 C -0.091 4.091 28 C -0.246 4.246 29 C -0.183 4.183 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.194 0.806 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.452 -12.969 16.700 23.586 hybrid contribution 0.504 0.461 -0.812 1.061 sum 10.956 -12.507 15.887 22.997 Atomic orbital electron populations 1.69966 1.05878 1.27117 1.48200 1.24984 0.94830 0.99004 0.94206 0.86680 0.79677 0.83001 0.78825 1.20227 1.21282 1.19982 1.20358 0.92795 0.88536 1.52243 0.92027 1.19016 0.99378 0.93174 0.86101 1.21186 0.84722 0.98875 0.91547 1.45892 1.12841 1.61257 1.11565 1.19948 0.88691 0.80282 0.83697 1.90709 1.27147 1.50478 1.73710 1.20503 0.89587 0.78073 0.82743 1.90759 1.28231 1.47280 1.72841 1.45804 1.12336 1.61821 1.15806 1.21037 0.86924 0.98854 0.88984 0.88742 1.21843 0.97674 1.03787 0.92992 1.20057 0.91060 0.96520 0.99727 1.22372 0.95003 0.98251 0.93145 1.76991 1.08819 1.07693 1.17693 1.46313 1.24187 1.36157 1.12753 0.71738 1.22077 0.93773 1.00923 0.91409 1.19988 1.01123 1.05027 0.97977 1.20376 0.94755 0.97193 0.96811 1.22996 0.99895 0.95686 1.06034 1.22503 0.91319 1.01737 1.02729 0.92766 0.90583 0.93454 0.75023 0.75188 0.89744 0.90554 0.89285 0.89298 0.80586 0.90714 0.90256 0.90236 0.91586 0.91676 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.97 12.86 55.43 0.71 -23.25 16 2 C 0.07 1.95 5.44 -17.82 -0.10 1.86 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.92 8.57 -34.44 -0.30 -13.21 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.02 0.56 1.40 -155.66 -0.22 0.34 16 10 C 0.16 3.51 5.53 -4.04 -0.02 3.48 16 11 N -0.67 -13.16 5.46 -60.73 -0.33 -13.50 16 12 C 0.49 9.06 7.88 -11.58 -0.09 8.97 16 13 O -0.54 -10.70 16.47 5.50 0.09 -10.61 16 14 C 0.51 8.03 7.85 -11.59 -0.09 7.94 16 15 O -0.52 -9.21 16.16 5.50 0.09 -9.12 16 16 N -0.70 -8.32 5.07 -54.03 -0.27 -8.59 16 17 C 0.15 1.48 2.40 -67.71 -0.16 1.32 16 18 H 0.09 1.13 7.54 -51.93 -0.39 0.74 16 19 C -0.12 -0.93 5.33 -26.53 -0.14 -1.07 16 20 C -0.03 -0.26 6.31 -27.57 -0.17 -0.44 16 21 C 0.08 0.82 7.10 -82.34 -0.58 0.24 16 22 N -0.29 -3.14 12.68 33.75 0.43 -2.71 16 23 N -0.49 -3.88 7.37 30.35 0.22 -3.65 16 24 H 0.44 2.03 8.96 -182.44 -1.64 0.40 16 25 C 0.06 0.50 11.95 -17.36 -0.21 0.29 16 26 C -0.23 -2.21 5.89 -104.98 -0.62 -2.83 16 27 C -0.05 -0.50 5.85 -27.59 -0.16 -0.66 16 28 C -0.21 -4.29 9.95 -26.73 -0.27 -4.55 16 29 C -0.14 -3.23 9.40 -26.73 -0.25 -3.48 16 30 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 32 H 0.05 1.00 8.05 -51.93 -0.42 0.59 16 33 H 0.41 8.11 7.83 -40.82 -0.32 7.79 16 34 H 0.41 4.32 8.08 -40.82 -0.33 3.99 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -31.63 381.96 -9.42 -41.05 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.71 Total: 10.76 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -3.38 Total: -1.81 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.76 Total: -51.70 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.18 Total: -19.74 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.63 -9.42 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340596801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.018 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds