Wall clock time and date at job start Sat Apr 11 2020 03:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47341 * 239.72744 * 3 2 1 5 5 H 1.48501 * 109.47182 * 359.73097 * 3 2 1 6 6 H 1.48510 * 109.47198 * 119.72584 * 3 2 1 7 7 C 1.37885 * 120.00208 * 179.72914 * 2 1 3 8 8 H 1.07994 * 119.99830 * 175.01291 * 7 2 1 9 9 C 1.50699 * 119.99534 * 355.01354 * 7 2 1 10 10 C 1.53002 * 115.54736 * 279.48026 * 9 7 2 11 11 N 1.46496 * 109.47362 * 294.91900 * 10 9 7 12 12 C 1.34777 * 120.00020 * 184.96282 * 11 10 9 13 13 O 1.21344 * 120.00020 * 5.05651 * 12 11 10 14 14 C 1.49456 * 119.99957 * 185.04996 * 12 11 10 15 15 O 1.21348 * 119.99621 * 5.05303 * 14 12 11 16 16 N 1.34770 * 119.99794 * 185.04495 * 14 12 11 17 17 C 1.46506 * 119.99664 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.43110 * 35.10074 * 17 16 14 19 19 C 1.53029 * 109.42862 * 155.00032 * 17 16 14 20 20 C 1.53366 * 109.74830 * 191.80365 * 19 17 16 21 21 C 1.50954 * 108.20593 * 309.35140 * 20 19 17 22 22 N 1.30124 * 128.28849 * 196.65048 * 21 20 19 23 23 N 1.40314 * 108.12571 * 179.86216 * 22 21 20 24 24 H 0.96996 * 126.01180 * 180.02562 * 23 22 21 25 25 C 1.35203 * 107.98867 * 0.03810 * 23 22 21 26 26 C 1.34569 * 107.62061 * 0.03972 * 25 23 22 27 27 C 1.50885 * 128.32678 * 179.70929 * 26 25 23 28 28 C 1.52999 * 117.49900 * 133.77557 * 9 7 2 29 29 C 1.52995 * 60.00135 * 252.50871 * 28 9 7 30 30 H 0.96998 * 120.00239 * 5.27277 * 1 2 3 31 31 H 1.08994 * 109.47281 * 54.92536 * 10 9 7 32 32 H 1.09002 * 109.46749 * 174.92314 * 10 9 7 33 33 H 0.97003 * 120.00215 * 4.96481 * 11 10 9 34 34 H 0.96994 * 120.00491 * 0.02562 * 16 14 12 35 35 H 1.08998 * 109.42462 * 311.89005 * 19 17 16 36 36 H 1.09000 * 109.42220 * 71.71741 * 19 17 16 37 37 H 1.08998 * 109.71925 * 69.02279 * 20 19 17 38 38 H 1.08997 * 109.71960 * 189.63299 * 20 19 17 39 39 H 1.08008 * 126.18616 * 180.02562 * 25 23 22 40 40 H 1.09003 * 109.71768 * 77.07146 * 27 26 25 41 41 H 1.08993 * 109.71841 * 316.42411 * 27 26 25 42 42 H 1.09010 * 117.49582 * 0.02562 * 28 9 7 43 43 H 1.08997 * 117.49880 * 145.01396 * 28 9 7 44 44 H 1.08999 * 117.49879 * 252.50828 * 29 28 9 45 45 H 1.08996 * 117.50189 * 107.48935 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7465 -0.0066 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0056 8 1 3.0815 -1.1962 -0.0757 9 6 1.2553 -2.4961 0.1252 10 6 0.8332 -2.8867 1.5431 11 7 2.0259 -3.1343 2.3569 12 6 1.8979 -3.5908 3.6186 13 8 0.8021 -3.8838 4.0496 14 6 3.1057 -3.7362 4.4868 15 8 4.1879 -3.3580 4.0889 16 7 2.9928 -4.2874 5.7114 17 6 4.1767 -4.4294 6.5627 18 1 4.8414 -3.5802 6.4041 19 6 3.7461 -4.4717 8.0305 20 6 4.9754 -4.3237 8.9356 21 6 6.0152 -5.3213 8.4858 22 7 7.0632 -5.7408 9.1331 23 7 7.7354 -6.6673 8.3216 24 1 8.5503 -7.1407 8.5511 25 6 7.0478 -6.7841 7.1634 26 6 5.9833 -5.9642 7.2371 27 6 4.9122 -5.7260 6.2014 28 6 1.6419 -3.6243 -0.8333 29 6 0.3185 -2.8801 -1.0218 30 1 -0.4850 0.8365 -0.0772 31 1 0.2531 -2.0769 1.9855 32 1 0.2252 -3.7906 1.5051 33 1 2.9077 -2.9698 1.9878 34 1 2.1279 -4.5899 6.0293 35 1 3.0503 -3.6563 8.2279 36 1 3.2562 -5.4232 8.2373 37 1 5.3748 -3.3130 8.8511 38 1 4.6965 -4.5235 9.9702 39 1 7.3064 -7.4203 6.3297 40 1 4.2096 -6.5594 6.2006 41 1 5.3684 -5.6279 5.2164 42 1 2.4385 -3.4248 -1.5501 43 1 1.5957 -4.6450 -0.4538 44 1 -0.5984 -3.4113 -0.7665 45 1 0.2440 -2.1909 -1.8630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340596801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:16 Heat of formation + Delta-G solvation = -3.282843 kcal Electronic energy + Delta-G solvation = -27805.634994 eV Core-core repulsion = 23824.069046 eV Total energy + Delta-G solvation = -3981.565948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44454 -41.58506 -39.79815 -38.44166 -37.91497 -35.28605 -34.43719 -33.97029 -32.80900 -31.26883 -29.31784 -28.47590 -27.36558 -25.74023 -24.48812 -22.92930 -22.41383 -21.95351 -21.38857 -21.17608 -20.06341 -19.21190 -18.55636 -18.07171 -17.81176 -16.93042 -16.75846 -16.57580 -16.25725 -16.16047 -15.66087 -15.49808 -14.96300 -14.88304 -14.61403 -14.39779 -14.31206 -13.92324 -13.70536 -13.61753 -13.48291 -13.05556 -12.96730 -12.94010 -12.80955 -12.66434 -12.38050 -12.07414 -12.00400 -11.87777 -11.43169 -11.39773 -10.94752 -10.68582 -10.44994 -10.35417 -10.27405 -10.08324 -9.92730 -9.37141 -8.09792 -6.22793 0.43710 0.96843 1.41737 1.42939 1.45880 1.51303 1.75344 2.00961 2.22958 2.42759 2.73954 3.18220 3.42590 3.52986 3.64253 3.78046 3.88813 4.04562 4.22164 4.25121 4.38861 4.47567 4.53800 4.59637 4.65666 4.71092 4.72310 4.76607 4.93298 4.96299 5.02747 5.03542 5.12090 5.18555 5.24738 5.29662 5.35235 5.40166 5.54588 5.68119 5.69528 5.79021 6.07894 6.37379 6.47271 6.52848 6.72613 6.82509 6.86783 7.06071 7.46714 8.96942 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002398 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.315318 B =11675.770025 C =12020.177411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.058 0.942 9 C -0.001 4.001 10 C 0.175 3.825 11 N -0.670 5.670 12 C 0.495 3.505 13 O -0.556 6.556 14 C 0.517 3.483 15 O -0.540 6.540 16 N -0.682 5.682 17 C 0.145 3.855 18 H 0.076 0.924 19 C -0.115 4.115 20 C -0.033 4.033 21 C 0.070 3.930 22 N -0.324 5.324 23 N -0.479 5.479 24 H 0.452 0.548 25 C 0.075 3.925 26 C -0.255 4.255 27 C -0.043 4.043 28 C -0.179 4.179 29 C -0.151 4.151 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.414 0.586 34 H 0.421 0.579 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.209 0.791 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.929 -14.653 16.526 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.076 0.924 9 C -0.001 4.001 10 C 0.052 3.948 11 N -0.320 5.320 12 C 0.276 3.724 13 O -0.435 6.435 14 C 0.297 3.703 15 O -0.417 6.417 16 N -0.335 5.335 17 C 0.041 3.959 18 H 0.094 0.906 19 C -0.153 4.153 20 C -0.073 4.073 21 C -0.098 4.098 22 N -0.147 5.147 23 N -0.189 5.189 24 H 0.298 0.702 25 C -0.072 4.072 26 C -0.267 4.267 27 C -0.082 4.082 28 C -0.216 4.216 29 C -0.189 4.189 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.259 0.741 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.226 0.774 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.438 -14.356 17.676 25.482 hybrid contribution 0.251 0.805 -1.066 1.359 sum 11.689 -13.551 16.610 24.416 Atomic orbital electron populations 1.70065 1.06937 1.27466 1.49567 1.25618 0.95491 1.01724 0.94354 0.85833 0.78536 0.79857 0.78735 1.19606 1.21310 1.20106 1.20640 0.92835 0.89863 1.51293 0.92411 1.19053 1.00461 0.93610 0.87007 1.20795 0.85236 0.97829 0.90987 1.45806 1.12094 1.61919 1.12174 1.20390 0.89443 0.79203 0.83358 1.90695 1.28072 1.50881 1.73878 1.19984 0.88102 0.78710 0.83507 1.90759 1.28526 1.48882 1.73540 1.45757 1.13536 1.59798 1.14371 1.21190 0.85878 0.98589 0.90202 0.90597 1.21799 0.97821 1.04996 0.90713 1.20130 0.90598 0.96112 1.00449 1.22727 0.95205 0.98498 0.93370 1.76928 1.09649 1.09094 1.19033 1.46371 1.24467 1.35538 1.12508 0.70183 1.22592 0.92727 1.00120 0.91748 1.20113 1.02167 1.06424 0.98044 1.20241 0.94917 0.96996 0.96093 1.22989 0.98470 0.95998 1.04181 1.22435 0.92709 1.02088 1.01706 0.93054 0.94086 0.92662 0.74924 0.74116 0.88635 0.89231 0.89228 0.87883 0.77424 0.89724 0.91759 0.89915 0.89085 0.90569 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.21 12.86 21.45 0.28 -49.93 16 2 C 0.03 1.56 5.44 84.66 0.46 2.02 16 3 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.51 -26.25 8.57 25.60 0.22 -26.03 16 8 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 9 C 0.00 -0.03 1.40 -52.93 -0.07 -0.10 16 10 C 0.17 7.72 5.53 86.38 0.48 8.20 16 11 N -0.67 -26.33 5.46 -464.42 -2.54 -28.86 16 12 C 0.50 17.86 7.88 87.27 0.69 18.55 16 13 O -0.56 -21.55 16.47 -3.23 -0.05 -21.60 16 14 C 0.52 15.84 7.85 87.27 0.68 16.53 16 15 O -0.54 -19.03 16.16 -3.24 -0.05 -19.09 16 16 N -0.68 -15.11 5.07 -443.20 -2.25 -17.36 16 17 C 0.15 2.73 2.40 45.13 0.11 2.84 16 18 H 0.08 1.77 7.54 -2.39 -0.02 1.75 16 19 C -0.11 -1.48 5.33 30.73 0.16 -1.32 16 20 C -0.03 -0.47 6.31 30.05 0.19 -0.28 16 21 C 0.07 1.33 7.10 43.44 0.31 1.64 16 22 N -0.32 -6.64 12.68 -47.13 -0.60 -7.24 16 23 N -0.48 -6.84 7.37 -57.88 -0.43 -7.26 16 24 H 0.45 3.41 8.96 -213.19 -1.91 1.50 16 25 C 0.07 1.01 11.95 83.33 1.00 2.01 16 26 C -0.26 -4.52 5.89 -20.10 -0.12 -4.64 16 27 C -0.04 -0.77 5.85 30.03 0.18 -0.59 16 28 C -0.18 -7.07 9.95 30.59 0.30 -6.76 16 29 C -0.15 -6.69 9.40 30.59 0.29 -6.41 16 30 H 0.26 14.00 8.32 -92.71 -0.77 13.22 16 31 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 33 H 0.41 16.15 7.83 -92.71 -0.73 15.43 16 34 H 0.42 8.01 8.08 -92.71 -0.75 7.26 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.06 3.12 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -67.80 381.96 -1.07 -68.88 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -2.33 Total: 32.04 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 4.87 Total: 5.65 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -5.53 Total: -110.65 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.11 Total: -40.69 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.80 -1.07 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340596801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.595 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds