Wall clock time and date at job start Sat Apr 11 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00568 * 2 1 4 4 H 1.48501 * 109.46827 * 240.00574 * 3 2 1 5 5 H 1.48507 * 109.46582 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47221 * 120.00124 * 3 2 1 7 7 C 1.37880 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47111 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47385 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99974 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00109 * 179.97438 * 12 11 10 15 15 C 1.45196 * 116.99931 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47231 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47275 * 180.02562 * 16 15 14 18 18 N 1.46509 * 109.47014 * 180.02562 * 17 16 15 19 19 C 1.39178 * 119.99483 * 179.97438 * 18 17 16 20 20 C 1.40763 * 119.62801 * 359.97438 * 19 18 17 21 21 C 1.35928 * 120.07005 * 180.02562 * 20 19 18 22 22 C 1.40885 * 119.24215 * 359.97438 * 21 20 19 23 23 N 1.32635 * 132.64514 * 179.68244 * 22 21 20 24 24 C 1.33316 * 109.06005 * 179.97438 * 23 22 21 25 25 C 1.35448 * 108.56208 * 0.37131 * 24 23 22 26 26 N 1.36215 * 107.22780 * 359.77649 * 25 24 23 27 27 N 1.31212 * 119.61915 * 180.02562 * 19 18 17 28 28 H 0.97004 * 119.99821 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47134 * 60.00338 * 9 7 2 30 30 H 1.09004 * 109.46964 * 300.00224 * 9 7 2 31 31 H 1.08993 * 109.47459 * 59.99744 * 10 9 7 32 32 H 1.09004 * 109.47164 * 299.99677 * 10 9 7 33 33 H 1.09001 * 109.47090 * 59.99792 * 11 10 9 34 34 H 1.08998 * 109.47413 * 300.00096 * 11 10 9 35 35 H 1.09005 * 109.47228 * 60.00215 * 15 14 12 36 36 H 1.09000 * 109.47565 * 299.99677 * 15 14 12 37 37 H 1.09009 * 109.47030 * 60.00154 * 16 15 14 38 38 H 1.09003 * 109.47378 * 300.00474 * 16 15 14 39 39 H 1.08997 * 109.47380 * 60.00275 * 17 16 15 40 40 H 1.09000 * 109.47516 * 300.00043 * 17 16 15 41 41 H 0.96996 * 120.00178 * 359.97438 * 18 17 16 42 42 H 1.07999 * 119.96301 * 0.02562 * 20 19 18 43 43 H 1.08002 * 120.37937 * 180.02562 * 21 20 19 44 44 H 1.07996 * 125.71438 * 180.12398 * 24 23 22 45 45 H 1.08000 * 126.38241 * 179.76035 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6472 -5.9119 -0.0013 14 8 2.0118 -7.3981 -0.0019 15 6 3.0117 -8.4509 -0.0020 16 6 2.3171 -9.8141 -0.0014 17 6 3.3707 -10.9234 -0.0008 18 7 2.7055 -12.2287 -0.0010 19 6 3.4635 -13.3960 -0.0010 20 6 4.8687 -13.3131 -0.0015 21 6 5.6178 -14.4474 -0.0021 22 6 4.9713 -15.6991 -0.0017 23 7 5.4258 -16.9452 -0.0075 24 6 4.3913 -17.7860 -0.0032 25 6 3.2468 -17.0615 -0.0028 26 7 3.6019 -15.7464 -0.0019 27 7 2.8601 -14.5611 -0.0016 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5570 0.8897 31 1 2.8717 -3.6044 0.8894 32 1 2.8717 -3.6044 -0.8906 33 1 0.8536 -5.0445 -0.8914 34 1 0.8530 -5.0451 0.8885 35 1 3.6345 -8.3605 0.8881 36 1 3.6345 -8.3605 -0.8919 37 1 1.6940 -9.9047 -0.8913 38 1 1.6944 -9.9043 0.8887 39 1 3.9934 -10.8326 0.8891 40 1 3.9936 -10.8334 -0.8908 41 1 1.7368 -12.2795 -0.0010 42 1 5.3521 -12.3474 -0.0014 43 1 6.6963 -14.3897 -0.0021 44 1 4.4550 -18.8641 -0.0043 45 1 2.2405 -17.4534 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344984518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:19 Heat of formation + Delta-G solvation = 22.919239 kcal Electronic energy + Delta-G solvation = -25565.358385 eV Core-core repulsion = 21584.928644 eV Total energy + Delta-G solvation = -3980.429741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.82338 -40.40798 -39.36629 -37.08472 -36.08560 -34.36893 -33.99848 -33.02579 -32.13992 -30.38475 -29.45377 -28.28380 -26.14066 -24.83465 -24.10585 -22.84794 -22.14552 -21.84375 -21.20634 -19.89111 -18.93766 -18.37368 -17.50933 -17.04165 -16.85390 -16.54478 -16.43901 -15.97240 -15.74454 -15.40109 -14.88212 -14.49575 -14.46721 -14.29316 -14.08995 -13.72945 -13.66373 -13.20490 -12.92548 -12.85496 -12.35454 -11.96896 -11.93420 -11.84095 -11.59193 -11.47073 -11.36820 -10.85125 -10.74926 -10.70640 -10.63722 -10.45366 -10.31405 -10.29461 -9.79272 -9.44905 -9.15066 -8.75511 -8.66019 -8.37858 -6.03415 -4.05646 0.04583 1.00433 1.29377 2.37727 2.41007 2.47243 2.86785 2.93063 3.32573 3.36629 3.39811 3.63980 3.83940 4.03323 4.21897 4.28413 4.40987 4.44606 4.57350 4.80727 4.82100 4.82720 4.88132 4.96254 5.11515 5.16447 5.20261 5.32797 5.38290 5.41798 5.46928 5.54369 5.60191 5.81057 6.01954 6.11639 6.14272 6.44327 6.55264 6.75165 6.75382 7.01218 7.30365 7.42640 7.61773 7.73233 7.89812 7.95904 8.38379 9.00830 9.58736 11.07962 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.058510 B = 0.001224 C = 0.001201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.438428 B =22862.625094 C =23299.406813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.112 4.112 12 C 0.462 3.538 13 O -0.507 6.507 14 O -0.362 6.362 15 C 0.068 3.932 16 C -0.132 4.132 17 C 0.128 3.872 18 N -0.703 5.703 19 C 0.419 3.581 20 C -0.201 4.201 21 C 0.020 3.980 22 C 0.137 3.863 23 N -0.460 5.460 24 C 0.006 3.994 25 C -0.020 4.020 26 N -0.244 5.244 27 N -0.357 5.357 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.413 0.587 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.188 0.812 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -33.136 0.006 33.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.394 6.394 14 O -0.280 6.280 15 C -0.006 4.006 16 C -0.170 4.170 17 C 0.004 3.996 18 N -0.342 5.342 19 C 0.154 3.846 20 C -0.228 4.228 21 C -0.007 4.007 22 C -0.110 4.110 23 N -0.181 5.181 24 C -0.150 4.150 25 C -0.160 4.160 26 N -0.011 5.011 27 N -0.186 5.186 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.205 0.795 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.087 -33.291 -0.002 33.843 hybrid contribution 0.020 1.267 0.003 1.267 sum 6.107 -32.023 0.001 32.601 Atomic orbital electron populations 1.69945 1.06055 1.26786 1.50769 1.25007 0.94849 0.99261 0.95224 0.86644 0.79585 0.83011 0.78697 1.20205 1.21269 1.20200 1.21196 0.93141 0.90921 1.50779 0.92587 1.19122 0.93872 0.91148 0.97440 1.21587 0.98982 0.91224 1.01991 1.21714 0.97321 0.90560 1.05338 1.24451 0.90210 0.83163 0.71628 1.90650 1.18521 1.85032 1.45149 1.86524 1.40591 1.16181 1.84700 1.22706 0.90199 0.84645 1.03095 1.21657 0.98617 0.91557 1.05165 1.21379 0.95455 0.79977 1.02801 1.44266 1.09018 1.00980 1.79910 1.19041 0.89484 0.86997 0.89052 1.21251 0.92021 1.00763 1.08787 1.20403 1.01603 0.87046 0.91641 1.21114 0.81971 0.95367 1.12508 1.70631 1.30912 0.97417 1.19122 1.22599 0.86906 1.00021 1.05492 1.22540 1.02177 0.78672 1.12587 1.46163 1.05709 1.04418 1.44838 1.75372 1.19317 0.89494 1.34396 0.92910 0.96349 0.96357 0.92408 0.92418 0.88022 0.88015 0.90897 0.90890 0.89558 0.89562 0.90641 0.90648 0.75007 0.82705 0.81849 0.79520 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.02 4.44 -26.73 -0.12 -2.13 16 11 C -0.11 -1.73 5.81 -27.88 -0.16 -1.89 16 12 C 0.46 6.87 7.96 36.01 0.29 7.16 16 13 O -0.51 -8.91 15.73 -18.75 -0.29 -9.20 16 14 O -0.36 -4.31 10.22 -39.25 -0.40 -4.71 16 15 C 0.07 0.56 5.47 37.16 0.20 0.77 16 16 C -0.13 -0.65 5.71 -26.73 -0.15 -0.80 16 17 C 0.13 0.47 4.89 -4.04 -0.02 0.45 16 18 N -0.70 -3.61 5.74 -60.19 -0.35 -3.96 16 19 C 0.42 3.14 7.75 -155.23 -1.20 1.93 16 20 C -0.20 -1.19 9.26 -39.46 -0.37 -1.55 16 21 C 0.02 0.14 10.11 -39.41 -0.40 -0.26 16 22 C 0.14 1.39 7.88 -156.05 -1.23 0.16 16 23 N -0.46 -4.89 11.32 -12.75 -0.14 -5.04 16 24 C 0.01 0.05 11.84 -17.90 -0.21 -0.16 16 25 C -0.02 -0.16 12.00 -16.60 -0.20 -0.36 16 26 N -0.24 -2.50 4.01 -12.11 -0.05 -2.54 16 27 N -0.36 -3.52 11.95 31.31 0.37 -3.15 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 32 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.22 7.93 -51.93 -0.41 -0.19 16 40 H 0.08 0.22 7.92 -51.93 -0.41 -0.19 16 41 H 0.41 1.89 8.60 -40.82 -0.35 1.54 16 42 H 0.16 0.45 6.70 -52.49 -0.35 0.10 16 43 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -35.98 388.45 -9.97 -45.95 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.56 Total: -4.23 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -4.12 Total: -9.72 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.57 Total: -40.38 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.70 Total: -13.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.98 -9.97 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344984518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.864 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds