Wall clock time and date at job start Sat Apr 11 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00568 * 2 1 4 4 H 1.48501 * 109.46827 * 240.00574 * 3 2 1 5 5 H 1.48507 * 109.46582 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47221 * 120.00124 * 3 2 1 7 7 C 1.37880 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47111 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47385 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99974 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00109 * 179.97438 * 12 11 10 15 15 C 1.45196 * 116.99931 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47231 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47275 * 180.02562 * 16 15 14 18 18 N 1.46509 * 109.47014 * 180.02562 * 17 16 15 19 19 C 1.39178 * 119.99483 * 179.97438 * 18 17 16 20 20 C 1.40763 * 119.62801 * 359.97438 * 19 18 17 21 21 C 1.35928 * 120.07005 * 180.02562 * 20 19 18 22 22 C 1.40885 * 119.24215 * 359.97438 * 21 20 19 23 23 N 1.32635 * 132.64514 * 179.68244 * 22 21 20 24 24 C 1.33316 * 109.06005 * 179.97438 * 23 22 21 25 25 C 1.35448 * 108.56208 * 0.37131 * 24 23 22 26 26 N 1.36215 * 107.22780 * 359.77649 * 25 24 23 27 27 N 1.31212 * 119.61915 * 180.02562 * 19 18 17 28 28 H 0.97004 * 119.99821 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47134 * 60.00338 * 9 7 2 30 30 H 1.09004 * 109.46964 * 300.00224 * 9 7 2 31 31 H 1.08993 * 109.47459 * 59.99744 * 10 9 7 32 32 H 1.09004 * 109.47164 * 299.99677 * 10 9 7 33 33 H 1.09001 * 109.47090 * 59.99792 * 11 10 9 34 34 H 1.08998 * 109.47413 * 300.00096 * 11 10 9 35 35 H 1.09005 * 109.47228 * 60.00215 * 15 14 12 36 36 H 1.09000 * 109.47565 * 299.99677 * 15 14 12 37 37 H 1.09009 * 109.47030 * 60.00154 * 16 15 14 38 38 H 1.09003 * 109.47378 * 300.00474 * 16 15 14 39 39 H 1.08997 * 109.47380 * 60.00275 * 17 16 15 40 40 H 1.09000 * 109.47516 * 300.00043 * 17 16 15 41 41 H 0.96996 * 120.00178 * 359.97438 * 18 17 16 42 42 H 1.07999 * 119.96301 * 0.02562 * 20 19 18 43 43 H 1.08002 * 120.37937 * 180.02562 * 21 20 19 44 44 H 1.07996 * 125.71438 * 180.12398 * 24 23 22 45 45 H 1.08000 * 126.38241 * 179.76035 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6472 -5.9119 -0.0013 14 8 2.0118 -7.3981 -0.0019 15 6 3.0117 -8.4509 -0.0020 16 6 2.3171 -9.8141 -0.0014 17 6 3.3707 -10.9234 -0.0008 18 7 2.7055 -12.2287 -0.0010 19 6 3.4635 -13.3960 -0.0010 20 6 4.8687 -13.3131 -0.0015 21 6 5.6178 -14.4474 -0.0021 22 6 4.9713 -15.6991 -0.0017 23 7 5.4258 -16.9452 -0.0075 24 6 4.3913 -17.7860 -0.0032 25 6 3.2468 -17.0615 -0.0028 26 7 3.6019 -15.7464 -0.0019 27 7 2.8601 -14.5611 -0.0016 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5570 0.8897 31 1 2.8717 -3.6044 0.8894 32 1 2.8717 -3.6044 -0.8906 33 1 0.8536 -5.0445 -0.8914 34 1 0.8530 -5.0451 0.8885 35 1 3.6345 -8.3605 0.8881 36 1 3.6345 -8.3605 -0.8919 37 1 1.6940 -9.9047 -0.8913 38 1 1.6944 -9.9043 0.8887 39 1 3.9934 -10.8326 0.8891 40 1 3.9936 -10.8334 -0.8908 41 1 1.7368 -12.2795 -0.0010 42 1 5.3521 -12.3474 -0.0014 43 1 6.6963 -14.3897 -0.0021 44 1 4.4550 -18.8641 -0.0043 45 1 2.2405 -17.4534 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344984518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:19 Heat of formation + Delta-G solvation = 1.669031 kcal Electronic energy + Delta-G solvation = -25566.279863 eV Core-core repulsion = 21584.928644 eV Total energy + Delta-G solvation = -3981.351219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.40293 -41.50262 -39.87135 -38.00535 -36.72922 -36.14728 -34.53708 -34.11803 -33.52673 -31.02569 -30.12182 -29.81876 -26.98496 -25.70825 -25.33231 -23.52649 -22.71149 -22.56334 -22.42281 -21.33092 -19.50261 -18.87931 -18.70893 -18.37243 -17.88859 -17.36160 -17.07098 -17.06712 -16.46978 -16.44654 -16.04068 -15.59005 -15.38925 -14.85121 -14.60325 -14.58227 -14.48648 -14.20457 -13.99009 -13.84165 -13.73383 -13.25394 -13.13931 -12.64412 -12.57517 -12.50181 -12.47092 -12.39417 -12.12085 -11.92788 -11.64181 -11.60277 -11.45461 -11.36658 -11.14089 -10.94930 -10.91735 -10.52857 -9.29274 -9.20185 -8.19207 -6.29196 -0.45553 0.44275 0.76562 1.21512 1.41682 1.43869 1.51804 1.63624 1.84664 2.27199 2.35406 2.42974 3.14566 3.14614 3.36453 3.55008 3.68538 3.87445 3.91272 4.02736 4.12914 4.21317 4.23497 4.33356 4.38568 4.41629 4.41803 4.54723 4.68751 4.72345 4.76602 4.86899 4.92440 5.00846 5.01963 5.07153 5.17836 5.29955 5.42735 5.54699 5.59349 5.70041 5.74590 5.87440 6.27259 6.29912 6.72465 6.78023 6.86574 6.86760 7.39770 8.92092 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.058510 B = 0.001224 C = 0.001201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.438428 B =22862.625094 C =23299.406813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.107 4.107 12 C 0.472 3.528 13 O -0.538 6.538 14 O -0.358 6.358 15 C 0.060 3.940 16 C -0.120 4.120 17 C 0.129 3.871 18 N -0.695 5.695 19 C 0.413 3.587 20 C -0.192 4.192 21 C 0.007 3.993 22 C 0.113 3.887 23 N -0.493 5.493 24 C 0.000 4.000 25 C -0.033 4.033 26 N -0.258 5.258 27 N -0.391 5.391 28 H 0.264 0.736 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.415 0.585 42 H 0.188 0.812 43 H 0.188 0.812 44 H 0.216 0.784 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -33.267 0.007 33.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.145 4.145 12 C 0.317 3.683 13 O -0.428 6.428 14 O -0.275 6.275 15 C -0.014 4.014 16 C -0.158 4.158 17 C 0.006 3.994 18 N -0.332 5.332 19 C 0.149 3.851 20 C -0.219 4.219 21 C -0.019 4.019 22 C -0.133 4.133 23 N -0.215 5.215 24 C -0.156 4.156 25 C -0.172 4.172 26 N -0.025 5.025 27 N -0.221 5.221 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.252 0.748 42 H 0.206 0.794 43 H 0.205 0.795 44 H 0.233 0.767 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.720 -33.433 0.000 34.102 hybrid contribution -0.230 1.276 0.002 1.297 sum 6.489 -32.157 0.002 32.806 Atomic orbital electron populations 1.70056 1.07542 1.27844 1.51504 1.25876 0.95747 1.03002 0.94684 0.85584 0.78395 0.78502 0.79082 1.19398 1.20617 1.19382 1.21667 0.93465 0.92675 1.50852 0.92731 1.19018 0.94232 0.92204 0.95818 1.21273 0.97875 0.92248 1.01083 1.21505 0.97144 0.88759 1.07057 1.24057 0.89222 0.84053 0.70948 1.90645 1.19627 1.85675 1.46835 1.86481 1.41545 1.15585 1.83908 1.23055 0.90031 0.84733 1.03601 1.21545 0.98733 0.89944 1.05551 1.21466 0.95111 0.78622 1.04248 1.44353 1.09195 1.00799 1.78867 1.19351 0.90504 0.86931 0.88330 1.21585 0.91252 1.01829 1.07190 1.20793 1.02933 0.86301 0.91922 1.21676 0.82449 0.96255 1.12963 1.70607 1.32143 0.98221 1.20492 1.23157 0.86395 1.01242 1.04785 1.23084 1.03408 0.78362 1.12302 1.46380 1.05958 1.04998 1.45213 1.75298 1.20230 0.90126 1.36468 0.92695 0.97874 0.97881 0.93298 0.93309 0.86365 0.86356 0.90476 0.90470 0.89240 0.89244 0.89212 0.89221 0.74767 0.79442 0.79528 0.76723 0.77509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -30.99 9.11 25.60 0.23 -30.76 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.50 4.44 30.59 0.14 -3.36 16 11 C -0.11 -3.18 5.81 29.85 0.17 -3.01 16 12 C 0.47 13.31 7.96 71.24 0.57 13.88 16 13 O -0.54 -18.33 15.73 21.97 0.35 -17.98 16 14 O -0.36 -7.72 10.22 -51.40 -0.53 -8.25 16 15 C 0.06 0.83 5.47 71.98 0.39 1.23 16 16 C -0.12 -0.84 5.71 30.59 0.17 -0.66 16 17 C 0.13 0.54 4.89 86.38 0.42 0.96 16 18 N -0.69 -5.60 5.74 -344.35 -1.98 -7.58 16 19 C 0.41 5.58 7.75 133.76 1.04 6.62 16 20 C -0.19 -1.87 9.26 22.35 0.21 -1.66 16 21 C 0.01 0.09 10.11 22.38 0.23 0.31 16 22 C 0.11 2.30 7.88 134.09 1.06 3.35 16 23 N -0.49 -10.62 11.32 -194.27 -2.20 -12.82 16 24 C 0.00 0.00 11.84 83.82 0.99 0.99 16 25 C -0.03 -0.53 12.00 83.37 1.00 0.47 16 26 N -0.26 -5.29 4.01 -192.22 -0.77 -6.06 16 27 N -0.39 -7.55 11.95 -54.85 -0.66 -8.21 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 32 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 33 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.08 1.04 8.13 -2.38 -0.02 1.02 16 36 H 0.08 1.04 8.13 -2.39 -0.02 1.03 16 37 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 0.19 7.93 -2.39 -0.02 0.17 16 40 H 0.09 0.19 7.92 -2.39 -0.02 0.17 16 41 H 0.42 3.06 8.60 -92.71 -0.80 2.27 16 42 H 0.19 0.42 6.70 -2.91 -0.02 0.40 16 43 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -78.84 388.45 3.97 -74.87 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 0.21 Total: 4.61 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 7.23 Total: -9.53 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -5.32 Total: -89.54 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.18 Total: -26.23 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -78.84 3.97 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344984518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.538 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds