Wall clock time and date at job start Sat Apr 11 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.52998 * 109.47188 * 180.02562 * 18 17 15 20 20 S 1.81400 * 109.46771 * 180.02562 * 19 18 17 21 21 O 1.42098 * 108.58414 * 294.49063 * 20 19 18 22 22 O 1.42103 * 108.57756 * 65.51690 * 20 19 18 23 23 C 1.81400 * 101.91989 * 180.02562 * 20 19 18 24 24 C 1.53009 * 109.47209 * 179.97438 * 23 20 19 25 25 C 1.52995 * 117.49986 * 243.74807 * 24 23 20 26 26 C 1.53000 * 117.49549 * 175.08873 * 24 23 20 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 35 35 H 1.00899 * 111.00310 * 183.94943 * 14 12 11 36 36 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 37 37 H 1.08998 * 109.47182 * 300.01147 * 18 17 15 38 38 H 1.09007 * 109.46701 * 60.00300 * 18 17 15 39 39 H 1.08994 * 109.47344 * 300.00187 * 19 18 17 40 40 H 1.08997 * 109.46641 * 60.00709 * 19 18 17 41 41 H 1.08996 * 109.47732 * 300.00366 * 23 20 19 42 42 H 1.09006 * 109.47012 * 60.00333 * 23 20 19 43 43 H 1.08998 * 115.54588 * 29.42146 * 24 23 20 44 44 H 1.09002 * 117.50248 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49816 * 145.02086 * 25 24 23 46 46 H 1.09001 * 117.49201 * 214.97741 * 26 24 23 47 47 H 1.08995 * 117.50189 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0426 -0.8435 14 7 3.2379 -6.1424 1.2534 15 6 1.7254 -7.4516 -0.1263 16 8 1.5132 -8.1256 0.8593 17 7 1.2911 -7.8663 -1.3328 18 6 0.5632 -9.1319 -1.4540 19 6 0.1874 -9.3659 -2.9185 20 16 -0.7146 -10.9326 -3.0683 21 8 0.1659 -11.9960 -2.7321 22 8 -1.9509 -10.8110 -2.3783 23 6 -1.0506 -11.0026 -4.8496 24 6 -1.8213 -12.2843 -5.1732 25 6 -1.1369 -13.3107 -6.0782 26 6 -2.3023 -12.4747 -6.6131 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.8535 -5.0450 0.8885 33 1 0.8542 -5.0446 -0.8914 34 1 2.6256 -6.2406 2.0494 35 1 3.9456 -6.8616 1.2508 36 1 1.4611 -7.3272 -2.1211 37 1 1.1949 -9.9492 -1.1062 38 1 -0.3422 -9.0896 -0.8485 39 1 -0.4443 -8.5487 -3.2666 40 1 1.0930 -9.4084 -3.5236 41 1 -1.6453 -10.1371 -5.1415 42 1 -0.1083 -10.9976 -5.3976 43 1 -2.4595 -12.6633 -4.3751 44 1 -0.1374 -13.0732 -6.4427 45 1 -1.3251 -14.3650 -5.8756 46 1 -3.2568 -12.9795 -6.7622 47 1 -2.0694 -11.6873 -7.3299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346493974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:22 Heat of formation + Delta-G solvation = -103.708763 kcal Electronic energy + Delta-G solvation = -25536.047089 eV Core-core repulsion = 21653.277546 eV Total energy + Delta-G solvation = -3882.769543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.08709 -38.15603 -37.46495 -36.53827 -36.13872 -35.48643 -33.35843 -31.49692 -31.37050 -30.01627 -27.95487 -25.56538 -23.82695 -23.01017 -22.28499 -21.49841 -20.43898 -20.03681 -19.35992 -17.74556 -17.41782 -16.90075 -16.59719 -16.44166 -16.17803 -15.76611 -15.57417 -15.39334 -14.89782 -14.50272 -14.45889 -14.13128 -14.01124 -13.90834 -13.08072 -12.88280 -12.56592 -12.49510 -12.45683 -12.44283 -12.28705 -12.13113 -11.90106 -11.81475 -11.50658 -11.48195 -11.16384 -10.88796 -10.74793 -10.67614 -10.57126 -10.44280 -10.26734 -9.63086 -9.41698 -9.24047 -9.06919 -8.61724 -8.30669 -5.96408 -3.98239 -0.65405 2.17589 2.46943 2.81216 3.02159 3.17548 3.35362 3.39604 3.42433 3.48508 3.78373 3.88332 4.03459 4.25896 4.31085 4.39908 4.48128 4.54581 4.64884 4.71579 4.75058 4.78986 5.05256 5.06929 5.15636 5.25678 5.28943 5.36108 5.39296 5.43817 5.50304 5.89013 6.05038 6.09141 6.40858 6.79375 6.98363 7.03401 7.21978 7.27391 7.48504 7.73004 7.88501 8.00292 8.04875 8.48056 9.09195 9.65505 11.14949 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.001842 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.445745 B =15194.857121 C =16336.566475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.105 4.105 12 C 0.079 3.921 13 H 0.102 0.898 14 N -0.811 5.811 15 C 0.481 3.519 16 O -0.545 6.545 17 N -0.726 5.726 18 C 0.130 3.870 19 C -0.637 4.637 20 S 2.428 3.572 21 O -0.928 6.928 22 O -0.928 6.928 23 C -0.579 4.579 24 C -0.157 4.157 25 C -0.171 4.171 26 C -0.163 4.163 27 H 0.260 0.740 28 H 0.012 0.988 29 H 0.014 0.986 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.351 0.649 35 H 0.338 0.662 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 -26.591 -14.736 30.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.143 4.143 12 C -0.037 4.037 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.267 3.733 16 O -0.421 6.421 17 N -0.380 5.380 18 C 0.005 3.995 19 C -0.765 4.765 20 S 2.609 3.391 21 O -0.925 6.925 22 O -0.925 6.925 23 C -0.708 4.708 24 C -0.176 4.176 25 C -0.207 4.207 26 C -0.201 4.201 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.241 0.759 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.402 -26.796 -13.533 30.052 hybrid contribution 0.261 0.878 -1.081 1.417 sum -1.141 -25.918 -14.614 29.776 Atomic orbital electron populations 1.69953 1.06049 1.26603 1.51093 1.25033 0.94840 0.99230 0.95479 0.86668 0.79563 0.83203 0.78599 1.20326 1.21386 1.20228 1.21241 0.93041 0.91105 1.50217 0.92703 1.19121 0.94102 0.91627 0.96941 1.21542 0.98773 0.92246 1.01194 1.21672 0.96543 0.94012 1.02068 1.21785 0.95833 0.90561 0.95487 0.88052 1.59047 1.17344 1.54241 1.03289 1.22709 0.79097 0.89053 0.82481 1.90694 1.57181 1.57253 1.36985 1.46081 1.58375 1.22823 1.10731 1.20886 0.98538 0.88774 0.91319 1.30703 1.15858 1.24314 1.05577 1.07915 0.76161 0.76936 0.78105 1.93613 1.66622 1.50603 1.81635 1.93630 1.42587 1.86193 1.70065 1.29931 1.09694 1.05535 1.25617 1.21678 1.04008 0.95293 0.96628 1.23168 0.97875 0.97289 1.02414 1.23039 0.99318 1.03113 0.94630 0.93041 0.96993 0.96743 0.93688 0.91766 0.91789 0.91905 0.83450 0.84938 0.75874 0.89934 0.89766 0.83846 0.84090 0.84307 0.84710 0.86383 0.88063 0.87845 0.87954 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -1.99 5.04 -26.73 -0.13 -2.13 16 11 C -0.10 -1.67 4.84 -26.73 -0.13 -1.80 16 12 C 0.08 1.04 3.15 -68.86 -0.22 0.82 16 13 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 14 N -0.81 -10.86 8.44 -5.65 -0.05 -10.91 16 15 C 0.48 6.35 7.07 -10.99 -0.08 6.28 16 16 O -0.54 -9.02 16.25 5.56 0.09 -8.93 16 17 N -0.73 -7.12 5.56 -60.29 -0.33 -7.46 16 18 C 0.13 1.20 5.68 -4.04 -0.02 1.18 16 19 C -0.64 -2.99 5.92 37.16 0.22 -2.77 16 20 S 2.43 15.93 4.66 -107.50 -0.50 15.43 16 21 O -0.93 -9.36 18.10 -57.83 -1.05 -10.41 16 22 O -0.93 -9.82 18.10 -57.83 -1.05 -10.86 16 23 C -0.58 -2.06 6.09 37.16 0.23 -1.83 16 24 C -0.16 -0.84 5.75 -90.62 -0.52 -1.36 16 25 C -0.17 -0.78 10.18 -26.70 -0.27 -1.06 16 26 C -0.16 -0.68 10.25 -26.69 -0.27 -0.95 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.35 4.94 8.58 -39.29 -0.34 4.60 16 35 H 0.34 3.91 9.06 -39.29 -0.36 3.55 16 36 H 0.41 2.81 8.47 -40.82 -0.35 2.47 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.14 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.14 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.13 0.16 7.87 -51.92 -0.41 -0.24 16 43 H 0.12 0.67 8.06 -51.93 -0.42 0.26 16 44 H 0.10 0.37 8.03 -51.93 -0.42 -0.05 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -39.37 406.63 -10.94 -50.31 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.15 Total: 3.14 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -1.75 Total: -16.80 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.35 Total: -44.72 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -2.00 Total: -30.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 15.93 SS G_CDS: -0.50 Total: 15.43 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -39.37 -10.94 -50.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.402 kcal (2) G-P(sol) polarization free energy of solvation -39.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds