Wall clock time and date at job start Sat Apr 11 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.52998 * 109.47188 * 180.02562 * 18 17 15 20 20 S 1.81400 * 109.46771 * 180.02562 * 19 18 17 21 21 O 1.42098 * 108.58414 * 294.49063 * 20 19 18 22 22 O 1.42103 * 108.57756 * 65.51690 * 20 19 18 23 23 C 1.81400 * 101.91989 * 180.02562 * 20 19 18 24 24 C 1.53009 * 109.47209 * 179.97438 * 23 20 19 25 25 C 1.52995 * 117.49986 * 243.74807 * 24 23 20 26 26 C 1.53000 * 117.49549 * 175.08873 * 24 23 20 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 35 35 H 1.00899 * 111.00310 * 183.94943 * 14 12 11 36 36 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 37 37 H 1.08998 * 109.47182 * 300.01147 * 18 17 15 38 38 H 1.09007 * 109.46701 * 60.00300 * 18 17 15 39 39 H 1.08994 * 109.47344 * 300.00187 * 19 18 17 40 40 H 1.08997 * 109.46641 * 60.00709 * 19 18 17 41 41 H 1.08996 * 109.47732 * 300.00366 * 23 20 19 42 42 H 1.09006 * 109.47012 * 60.00333 * 23 20 19 43 43 H 1.08998 * 115.54588 * 29.42146 * 24 23 20 44 44 H 1.09002 * 117.50248 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49816 * 145.02086 * 25 24 23 46 46 H 1.09001 * 117.49201 * 214.97741 * 26 24 23 47 47 H 1.08995 * 117.50189 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0426 -0.8435 14 7 3.2379 -6.1424 1.2534 15 6 1.7254 -7.4516 -0.1263 16 8 1.5132 -8.1256 0.8593 17 7 1.2911 -7.8663 -1.3328 18 6 0.5632 -9.1319 -1.4540 19 6 0.1874 -9.3659 -2.9185 20 16 -0.7146 -10.9326 -3.0683 21 8 0.1659 -11.9960 -2.7321 22 8 -1.9509 -10.8110 -2.3783 23 6 -1.0506 -11.0026 -4.8496 24 6 -1.8213 -12.2843 -5.1732 25 6 -1.1369 -13.3107 -6.0782 26 6 -2.3023 -12.4747 -6.6131 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.8535 -5.0450 0.8885 33 1 0.8542 -5.0446 -0.8914 34 1 2.6256 -6.2406 2.0494 35 1 3.9456 -6.8616 1.2508 36 1 1.4611 -7.3272 -2.1211 37 1 1.1949 -9.9492 -1.1062 38 1 -0.3422 -9.0896 -0.8485 39 1 -0.4443 -8.5487 -3.2666 40 1 1.0930 -9.4084 -3.5236 41 1 -1.6453 -10.1371 -5.1415 42 1 -0.1083 -10.9976 -5.3976 43 1 -2.4595 -12.6633 -4.3751 44 1 -0.1374 -13.0732 -6.4427 45 1 -1.3251 -14.3650 -5.8756 46 1 -3.2568 -12.9795 -6.7622 47 1 -2.0694 -11.6873 -7.3299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346493974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:21 Heat of formation + Delta-G solvation = -135.967617 kcal Electronic energy + Delta-G solvation = -25537.445938 eV Core-core repulsion = 21653.277546 eV Total energy + Delta-G solvation = -3884.168392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12542 -38.47459 -38.09510 -37.33596 -37.11386 -36.56442 -35.22899 -33.11617 -32.19333 -30.35134 -29.52002 -26.95270 -25.02685 -23.59526 -23.29788 -21.90322 -21.78238 -21.35389 -19.90571 -18.45300 -18.43031 -18.23299 -17.44233 -17.39231 -17.08311 -16.69800 -16.46581 -16.35701 -15.88698 -15.69067 -15.29066 -15.08412 -14.99079 -14.52978 -14.28678 -14.26276 -13.64912 -13.53110 -13.23609 -13.14021 -13.10553 -12.92858 -12.79640 -12.79040 -12.47456 -12.40495 -12.39646 -12.34359 -12.19192 -11.98365 -11.53215 -11.36564 -11.22913 -11.19644 -10.97307 -10.90304 -10.50108 -10.30915 -9.71453 -8.15760 -6.26143 -1.13382 1.41534 1.42866 1.45543 1.53245 1.75112 2.04560 2.44463 2.59064 2.73672 3.05006 3.17269 3.32438 3.47588 3.51145 3.71067 3.80345 3.87282 3.98610 4.01650 4.08186 4.17220 4.22156 4.34804 4.46842 4.52702 4.53734 4.64303 4.72460 4.78281 4.94071 5.00858 5.11984 5.15271 5.20715 5.22630 5.29350 5.36289 5.62353 5.86378 5.95580 6.02946 6.31859 6.37632 6.48868 6.91767 7.07188 7.42853 8.95692 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.001842 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.445745 B =15194.857121 C =16336.566475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.020 3.980 10 C -0.084 4.084 11 C -0.097 4.097 12 C 0.089 3.911 13 H 0.131 0.869 14 N -0.819 5.819 15 C 0.480 3.520 16 O -0.584 6.584 17 N -0.707 5.707 18 C 0.116 3.884 19 C -0.619 4.619 20 S 2.420 3.580 21 O -0.975 6.975 22 O -0.982 6.982 23 C -0.554 4.554 24 C -0.185 4.185 25 C -0.179 4.179 26 C -0.155 4.155 27 H 0.262 0.738 28 H -0.006 1.006 29 H -0.018 1.018 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.345 0.655 35 H 0.350 0.650 36 H 0.424 0.576 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -25.831 -17.649 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.017 4.017 10 C -0.121 4.121 11 C -0.135 4.135 12 C -0.027 4.027 13 H 0.148 0.852 14 N -0.348 5.348 15 C 0.266 3.734 16 O -0.464 6.464 17 N -0.362 5.362 18 C -0.009 4.009 19 C -0.748 4.748 20 S 2.608 3.392 21 O -0.972 6.972 22 O -0.979 6.979 23 C -0.686 4.686 24 C -0.205 4.205 25 C -0.216 4.216 26 C -0.193 4.193 27 H 0.071 0.929 28 H 0.013 0.987 29 H 0.001 0.999 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.262 0.738 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.192 0.808 40 H 0.199 0.801 41 H 0.186 0.814 42 H 0.187 0.813 43 H 0.120 0.880 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.306 -26.066 -16.453 30.826 hybrid contribution -0.308 0.619 -0.233 0.730 sum -0.002 -25.447 -16.687 30.430 Atomic orbital electron populations 1.70091 1.07788 1.27673 1.52011 1.25987 0.95758 1.03357 0.94955 0.85530 0.78263 0.78214 0.79200 1.18864 1.21055 1.19480 1.21717 0.93598 0.92472 1.50009 0.92136 1.19066 0.94616 0.93497 0.94487 1.21282 0.97511 0.91975 1.01358 1.21495 0.96764 0.93308 1.01933 1.21671 0.95463 0.89163 0.96387 0.85164 1.59062 1.17597 1.54851 1.03274 1.22671 0.78965 0.88895 0.82909 1.90684 1.58719 1.58427 1.38558 1.45928 1.56951 1.22935 1.10392 1.20970 0.97491 0.88117 0.94323 1.30550 1.17844 1.23380 1.03029 1.07747 0.74880 0.76979 0.79627 1.93552 1.67261 1.52964 1.83424 1.93563 1.44676 1.86965 1.72727 1.29736 1.11737 1.05868 1.21282 1.21836 1.04952 0.96599 0.97083 1.23315 0.98793 0.97235 1.02221 1.23156 0.99274 1.03167 0.93683 0.92925 0.98727 0.99947 0.92241 0.92680 0.93786 0.90394 0.84148 0.83686 0.73795 0.90891 0.91813 0.80785 0.80087 0.81390 0.81330 0.88013 0.86764 0.88154 0.87778 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.06 4.97 29.85 0.15 1.21 16 10 C -0.08 -3.26 5.04 30.60 0.15 -3.11 16 11 C -0.10 -3.00 4.84 30.59 0.15 -2.85 16 12 C 0.09 2.16 3.15 44.17 0.14 2.30 16 13 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 14 N -0.82 -21.13 8.44 -171.79 -1.45 -22.58 16 15 C 0.48 12.11 7.07 87.66 0.62 12.72 16 16 O -0.58 -19.48 16.25 -3.02 -0.05 -19.53 16 17 N -0.71 -12.31 5.56 -463.06 -2.57 -14.89 16 18 C 0.12 2.03 5.68 86.38 0.49 2.53 16 19 C -0.62 -4.01 5.92 71.98 0.43 -3.59 16 20 S 2.42 30.28 4.66 -56.49 -0.26 30.01 16 21 O -0.97 -20.20 18.10 -127.37 -2.30 -22.50 16 22 O -0.98 -21.90 18.10 -127.37 -2.31 -24.21 16 23 C -0.55 -2.29 6.09 71.99 0.44 -1.85 16 24 C -0.19 -1.75 5.75 -10.79 -0.06 -1.81 16 25 C -0.18 -1.37 10.18 30.62 0.31 -1.06 16 26 C -0.15 -0.96 10.25 30.62 0.31 -0.65 16 27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 2.25 7.75 -2.39 -0.02 2.23 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.35 9.73 8.58 -89.70 -0.77 8.96 16 35 H 0.35 7.63 9.06 -89.69 -0.81 6.82 16 36 H 0.42 4.25 8.47 -92.71 -0.79 3.46 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.17 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.18 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.17 -0.40 7.87 -2.39 -0.02 -0.41 16 43 H 0.10 1.25 8.06 -2.39 -0.02 1.23 16 44 H 0.11 0.55 8.03 -2.39 -0.02 0.53 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -89.30 406.63 -4.20 -93.49 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -1.39 Total: 17.06 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.82 Total: -26.28 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -3.74 Total: -94.26 kcal Atomic # 8 Polarization: -61.58 SS G_CDS: -4.66 Total: -66.23 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 30.28 SS G_CDS: -0.26 Total: 30.01 kcal Total: -89.30 -4.20 -93.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.473 kcal (2) G-P(sol) polarization free energy of solvation -89.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds