Wall clock time and date at job start Sat Apr 11 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 N 1.46898 * 109.47092 * 295.00148 * 12 11 10 15 15 C 1.50699 * 109.47482 * 174.99860 * 12 11 10 16 16 O 1.21286 * 119.99857 * 100.00182 * 15 12 11 17 17 N 1.34779 * 120.00420 * 280.00353 * 15 12 11 18 18 C 1.46493 * 120.00171 * 180.02562 * 17 15 12 19 19 C 1.53006 * 109.47239 * 179.97438 * 18 17 15 20 20 S 1.81399 * 109.47454 * 179.97438 * 19 18 17 21 21 O 1.42104 * 108.57431 * 294.48566 * 20 19 18 22 22 O 1.42099 * 108.57798 * 65.50911 * 20 19 18 23 23 C 1.81393 * 101.92140 * 180.02562 * 20 19 18 24 24 C 1.53000 * 109.47187 * 180.02562 * 23 20 19 25 25 C 1.53002 * 117.49836 * 243.74748 * 24 23 20 26 26 C 1.53003 * 117.49864 * 175.08551 * 24 23 20 27 27 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 29 29 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 32 32 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 33 33 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 34 34 H 1.00899 * 111.00057 * 299.99390 * 14 12 11 35 35 H 1.00898 * 110.99947 * 63.95776 * 14 12 11 36 36 H 0.97000 * 119.99454 * 359.97438 * 17 15 12 37 37 H 1.08998 * 109.47320 * 299.99635 * 18 17 15 38 38 H 1.08999 * 109.47518 * 59.99882 * 18 17 15 39 39 H 1.08998 * 109.46729 * 300.00073 * 19 18 17 40 40 H 1.08999 * 109.46900 * 59.99580 * 19 18 17 41 41 H 1.09000 * 109.47331 * 299.99696 * 23 20 19 42 42 H 1.09005 * 109.47487 * 59.99851 * 23 20 19 43 43 H 1.08997 * 115.54689 * 29.41467 * 24 23 20 44 44 H 1.08997 * 117.49794 * 359.97438 * 25 24 23 45 45 H 1.08999 * 117.49707 * 145.01659 * 25 24 23 46 46 H 1.09006 * 117.49436 * 214.97441 * 26 24 23 47 47 H 1.08996 * 117.49785 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 1 5.6269 -4.6178 -0.8435 14 7 5.6728 -4.7363 1.2535 15 6 7.5633 -4.0809 -0.1253 16 8 8.2529 -4.2343 0.8606 17 7 8.1404 -3.9120 -1.3315 18 6 9.6003 -3.9144 -1.4519 19 6 9.9917 -3.7058 -2.9163 20 16 11.7996 -3.7079 -3.0653 21 8 12.3120 -2.5765 -2.3749 22 8 12.2800 -5.0022 -2.7289 23 6 12.0291 -3.4502 -4.8461 24 6 13.5244 -3.4233 -5.1690 25 6 14.1044 -2.1200 -5.7220 26 6 13.9274 -3.3306 -6.6421 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6805 0.8889 29 1 3.8745 -0.6801 -0.8910 30 1 3.6584 -3.1503 0.8892 31 1 3.6578 -3.1506 -0.8908 32 1 5.9148 -2.1229 -0.8909 33 1 5.9148 -2.1228 0.8890 34 1 6.0636 -4.2554 2.0497 35 1 4.6690 -4.8055 1.3296 36 1 7.5888 -3.7897 -2.1200 37 1 10.0162 -3.1092 -0.8462 38 1 9.9921 -4.8702 -1.1041 39 1 9.5759 -4.5112 -3.5217 40 1 9.5999 -2.7501 -3.2645 41 1 11.5538 -4.2631 -5.3951 42 1 11.5770 -2.5020 -5.1373 43 1 14.1583 -4.0167 -4.5102 44 1 13.4206 -1.2818 -5.8562 45 1 15.1201 -1.8562 -5.4273 46 1 14.8269 -3.8626 -6.9522 47 1 13.1273 -3.2883 -7.3811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346493975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:24 Heat of formation + Delta-G solvation = -99.445658 kcal Electronic energy + Delta-G solvation = -25622.183034 eV Core-core repulsion = 21739.598353 eV Total energy + Delta-G solvation = -3882.584681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.00464 -38.16137 -37.46986 -36.56846 -36.38067 -35.56188 -33.40194 -31.55489 -31.46777 -30.02683 -28.24790 -25.94035 -23.84551 -23.01394 -22.21585 -21.50333 -20.43067 -20.25412 -19.36108 -17.76240 -17.56046 -16.89030 -16.78708 -16.58319 -16.18132 -15.73188 -15.45703 -15.01192 -14.93481 -14.71950 -14.58715 -14.16600 -14.00907 -13.75852 -13.35652 -12.92141 -12.67307 -12.61349 -12.55914 -12.47169 -12.45140 -12.14839 -12.13484 -12.03935 -11.90573 -11.55338 -11.46687 -11.07746 -10.89066 -10.82902 -10.58962 -10.12256 -10.02875 -9.83768 -9.60044 -9.38199 -9.27888 -8.61994 -8.58707 -6.11213 -4.09892 -0.66041 2.17116 2.56411 2.77754 3.01058 3.15227 3.24237 3.32861 3.35983 3.47971 3.77865 3.88045 4.02785 4.25457 4.30422 4.38534 4.39477 4.64228 4.64580 4.70713 4.72635 4.74828 5.04737 5.05556 5.13007 5.16446 5.22780 5.26378 5.28835 5.43078 5.50050 5.58826 5.76396 6.05322 6.08103 6.36318 6.48575 6.75229 7.03892 7.17219 7.29793 7.31640 7.52005 7.71429 8.09343 8.45743 8.93129 9.51126 11.02089 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002018 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.982065 B =13871.576447 C =15246.721600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.151 4.151 12 C 0.078 3.922 13 H 0.102 0.898 14 N -0.830 5.830 15 C 0.523 3.477 16 O -0.528 6.528 17 N -0.730 5.730 18 C 0.133 3.867 19 C -0.637 4.637 20 S 2.429 3.571 21 O -0.925 6.925 22 O -0.929 6.929 23 C -0.579 4.579 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.163 4.163 27 H 0.263 0.737 28 H 0.015 0.985 29 H 0.010 0.990 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.350 0.650 35 H 0.354 0.646 36 H 0.405 0.595 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.620 -7.933 -14.548 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.191 4.191 12 C -0.038 4.038 13 H 0.120 0.880 14 N -0.363 5.363 15 C 0.309 3.691 16 O -0.402 6.402 17 N -0.385 5.385 18 C 0.008 3.992 19 C -0.765 4.765 20 S 2.609 3.391 21 O -0.923 6.923 22 O -0.926 6.926 23 C -0.708 4.708 24 C -0.176 4.176 25 C -0.207 4.207 26 C -0.201 4.201 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.240 0.760 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 27.974 -8.680 -13.409 32.214 hybrid contribution -1.173 2.058 -1.031 2.583 sum 26.801 -6.623 -14.440 31.156 Atomic orbital electron populations 1.69913 1.06294 1.26942 1.50934 1.25048 0.94748 0.99216 0.94529 0.86772 0.80360 0.83639 0.78449 1.20341 1.21322 1.19090 1.21133 0.89454 0.94468 1.51044 0.91024 1.19561 0.97205 0.92067 0.96236 1.21484 0.90759 1.00382 1.01275 1.22468 0.99213 0.94596 1.02841 1.21409 0.90459 0.95837 0.96076 0.88006 1.58663 1.16981 1.57456 1.03181 1.20834 0.90873 0.74930 0.82454 1.90690 1.64933 1.47670 1.36948 1.45896 1.06183 1.75943 1.10461 1.20854 0.83093 1.03984 0.91238 1.30708 1.27718 1.12394 1.05644 1.07901 0.77375 0.75706 0.78080 1.93625 1.76257 1.52314 1.70056 1.93620 1.77442 1.39971 1.81594 1.29933 1.03195 1.12060 1.25615 1.21677 0.92015 1.04067 0.99848 1.23176 1.03036 0.91514 1.03001 1.23040 1.03609 1.01861 0.91637 0.92690 0.96704 0.97125 0.92637 0.92407 0.91571 0.91600 0.83616 0.83083 0.76049 0.89793 0.89757 0.84013 0.83975 0.84410 0.84655 0.86390 0.88007 0.87821 0.87980 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.71 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.78 4.92 -26.73 -0.13 -1.91 16 11 C -0.15 -2.16 4.84 -26.74 -0.13 -2.29 16 12 C 0.08 0.98 3.21 -68.87 -0.22 0.76 16 13 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 14 N -0.83 -11.07 8.94 -5.66 -0.05 -11.12 16 15 C 0.52 7.02 7.08 -10.98 -0.08 6.95 16 16 O -0.53 -9.05 16.25 5.55 0.09 -8.96 16 17 N -0.73 -7.06 5.56 -60.30 -0.33 -7.39 16 18 C 0.13 1.21 5.68 -4.04 -0.02 1.18 16 19 C -0.64 -2.82 5.92 37.16 0.22 -2.60 16 20 S 2.43 15.37 4.66 -107.50 -0.50 14.87 16 21 O -0.93 -9.51 18.10 -57.83 -1.05 -10.55 16 22 O -0.93 -9.26 18.10 -57.83 -1.05 -10.31 16 23 C -0.58 -1.93 6.09 37.16 0.23 -1.71 16 24 C -0.16 -0.82 5.75 -90.62 -0.52 -1.34 16 25 C -0.17 -0.80 10.18 -26.69 -0.27 -1.07 16 26 C -0.16 -0.66 10.26 -26.69 -0.27 -0.93 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.05 0.97 6.87 -51.93 -0.36 0.61 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.35 4.84 8.58 -39.29 -0.34 4.50 16 35 H 0.35 4.42 7.55 -39.29 -0.30 4.12 16 36 H 0.40 2.67 8.47 -40.82 -0.35 2.32 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.14 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.14 0.14 8.14 -51.92 -0.42 -0.29 16 42 H 0.14 0.18 7.88 -51.92 -0.41 -0.23 16 43 H 0.12 0.64 8.06 -51.93 -0.42 0.23 16 44 H 0.10 0.40 8.03 -51.93 -0.42 -0.02 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -39.33 401.08 -10.49 -49.83 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.01 Total: 3.91 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.75 Total: -16.39 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.39 Total: -45.14 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -2.00 Total: -29.82 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 15.37 SS G_CDS: -0.50 Total: 14.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.33 -10.49 -49.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.620 kcal (2) G-P(sol) polarization free energy of solvation -39.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds