Wall clock time and date at job start Sat Apr 11 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 N 1.46898 * 109.47092 * 295.00148 * 12 11 10 15 15 C 1.50699 * 109.47482 * 174.99860 * 12 11 10 16 16 O 1.21286 * 119.99857 * 100.00182 * 15 12 11 17 17 N 1.34779 * 120.00420 * 280.00353 * 15 12 11 18 18 C 1.46493 * 120.00171 * 180.02562 * 17 15 12 19 19 C 1.53006 * 109.47239 * 179.97438 * 18 17 15 20 20 S 1.81399 * 109.47454 * 179.97438 * 19 18 17 21 21 O 1.42104 * 108.57431 * 294.48566 * 20 19 18 22 22 O 1.42099 * 108.57798 * 65.50911 * 20 19 18 23 23 C 1.81393 * 101.92140 * 180.02562 * 20 19 18 24 24 C 1.53000 * 109.47187 * 180.02562 * 23 20 19 25 25 C 1.53002 * 117.49836 * 243.74748 * 24 23 20 26 26 C 1.53003 * 117.49864 * 175.08551 * 24 23 20 27 27 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 29 29 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 32 32 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 33 33 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 34 34 H 1.00899 * 111.00057 * 299.99390 * 14 12 11 35 35 H 1.00898 * 110.99947 * 63.95776 * 14 12 11 36 36 H 0.97000 * 119.99454 * 359.97438 * 17 15 12 37 37 H 1.08998 * 109.47320 * 299.99635 * 18 17 15 38 38 H 1.08999 * 109.47518 * 59.99882 * 18 17 15 39 39 H 1.08998 * 109.46729 * 300.00073 * 19 18 17 40 40 H 1.08999 * 109.46900 * 59.99580 * 19 18 17 41 41 H 1.09000 * 109.47331 * 299.99696 * 23 20 19 42 42 H 1.09005 * 109.47487 * 59.99851 * 23 20 19 43 43 H 1.08997 * 115.54689 * 29.41467 * 24 23 20 44 44 H 1.08997 * 117.49794 * 359.97438 * 25 24 23 45 45 H 1.08999 * 117.49707 * 145.01659 * 25 24 23 46 46 H 1.09006 * 117.49436 * 214.97441 * 26 24 23 47 47 H 1.08996 * 117.49785 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 1 5.6269 -4.6178 -0.8435 14 7 5.6728 -4.7363 1.2535 15 6 7.5633 -4.0809 -0.1253 16 8 8.2529 -4.2343 0.8606 17 7 8.1404 -3.9120 -1.3315 18 6 9.6003 -3.9144 -1.4519 19 6 9.9917 -3.7058 -2.9163 20 16 11.7996 -3.7079 -3.0653 21 8 12.3120 -2.5765 -2.3749 22 8 12.2800 -5.0022 -2.7289 23 6 12.0291 -3.4502 -4.8461 24 6 13.5244 -3.4233 -5.1690 25 6 14.1044 -2.1200 -5.7220 26 6 13.9274 -3.3306 -6.6421 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6805 0.8889 29 1 3.8745 -0.6801 -0.8910 30 1 3.6584 -3.1503 0.8892 31 1 3.6578 -3.1506 -0.8908 32 1 5.9148 -2.1229 -0.8909 33 1 5.9148 -2.1228 0.8890 34 1 6.0636 -4.2554 2.0497 35 1 4.6690 -4.8055 1.3296 36 1 7.5888 -3.7897 -2.1200 37 1 10.0162 -3.1092 -0.8462 38 1 9.9921 -4.8702 -1.1041 39 1 9.5759 -4.5112 -3.5217 40 1 9.5999 -2.7501 -3.2645 41 1 11.5538 -4.2631 -5.3951 42 1 11.5770 -2.5020 -5.1373 43 1 14.1583 -4.0167 -4.5102 44 1 13.4206 -1.2818 -5.8562 45 1 15.1201 -1.8562 -5.4273 46 1 14.8269 -3.8626 -6.9522 47 1 13.1273 -3.2883 -7.3811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346493975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:23 Heat of formation + Delta-G solvation = -132.364974 kcal Electronic energy + Delta-G solvation = -25623.610522 eV Core-core repulsion = 21739.598353 eV Total energy + Delta-G solvation = -3884.012169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02043 -38.46521 -38.07056 -37.58645 -37.10982 -36.50417 -35.21958 -33.26289 -32.17336 -30.34035 -29.68887 -27.21040 -24.85682 -23.51757 -23.29318 -21.88646 -21.83312 -21.34289 -19.87909 -18.88924 -18.59488 -18.21412 -17.39417 -17.18680 -16.93233 -16.54664 -16.28645 -16.11878 -15.98816 -15.78805 -15.34404 -15.19451 -14.88892 -14.79806 -14.30344 -14.26812 -13.88721 -13.67851 -13.49809 -13.20327 -13.10249 -13.03855 -12.84559 -12.78247 -12.66943 -12.39434 -12.36240 -12.31636 -11.97831 -11.80804 -11.70408 -11.44704 -11.33158 -11.19869 -10.95617 -10.77245 -10.76245 -10.26269 -9.67566 -8.29412 -6.33193 -1.11133 1.34363 1.37754 1.48573 1.53121 1.77591 2.01507 2.35372 2.60707 2.74691 3.06229 3.07368 3.35469 3.49341 3.64313 3.74723 3.75782 3.88332 3.98472 4.00135 4.09095 4.09422 4.25943 4.35932 4.38338 4.49954 4.51428 4.53917 4.71849 4.74393 4.78742 4.96611 5.01435 5.06913 5.11847 5.12995 5.23041 5.25768 5.52181 5.59869 5.67349 6.05519 6.28496 6.46295 6.48963 6.75756 7.16981 7.31742 8.87134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002018 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.982065 B =13871.576447 C =15246.721600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.034 0.966 9 C -0.014 4.014 10 C -0.093 4.093 11 C -0.139 4.139 12 C 0.084 3.916 13 H 0.127 0.873 14 N -0.837 5.837 15 C 0.519 3.481 16 O -0.573 6.573 17 N -0.710 5.710 18 C 0.119 3.881 19 C -0.618 4.618 20 S 2.421 3.579 21 O -0.978 6.978 22 O -0.979 6.979 23 C -0.555 4.555 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.153 4.153 27 H 0.265 0.735 28 H 0.011 0.989 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.346 0.654 35 H 0.357 0.643 36 H 0.423 0.577 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.180 0.820 40 H 0.177 0.823 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.407 -7.220 -17.414 33.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.174 1.174 7 C -0.569 4.569 8 H 0.053 0.947 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.178 4.178 12 C -0.031 4.031 13 H 0.144 0.856 14 N -0.369 5.369 15 C 0.305 3.695 16 O -0.451 6.451 17 N -0.365 5.365 18 C -0.006 4.006 19 C -0.747 4.747 20 S 2.608 3.392 21 O -0.975 6.975 22 O -0.976 6.976 23 C -0.687 4.687 24 C -0.203 4.203 25 C -0.220 4.220 26 C -0.191 4.191 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.198 0.802 40 H 0.195 0.805 41 H 0.189 0.811 42 H 0.184 0.816 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 28.789 -7.986 -16.287 34.028 hybrid contribution -1.465 1.758 -0.200 2.297 sum 27.324 -6.228 -16.487 32.515 Atomic orbital electron populations 1.70071 1.08285 1.28067 1.52782 1.26039 0.95604 1.03555 0.94329 0.85660 0.79305 0.78381 0.79275 1.18773 1.21388 1.17415 1.21540 0.92288 0.93059 1.50043 0.94731 1.19545 0.93710 0.95483 0.96376 1.21328 0.93155 0.97126 1.01482 1.22294 0.96387 0.95875 1.03293 1.21414 0.90187 0.94983 0.96557 0.85557 1.58677 1.17210 1.57579 1.03473 1.20985 0.90998 0.74601 0.82906 1.90678 1.65782 1.49971 1.38703 1.45736 1.06677 1.74063 1.10053 1.20942 0.82501 1.02833 0.94335 1.30546 1.25242 1.15917 1.03019 1.07729 0.78070 0.73811 0.79570 1.93560 1.77939 1.53370 1.72651 1.93558 1.79001 1.41652 1.83400 1.29742 1.02526 1.15074 1.21342 1.21838 0.93157 1.04500 1.00775 1.23315 1.03233 0.91941 1.03487 1.23159 1.04167 1.00808 0.90995 0.92601 0.97033 0.95950 0.93103 0.91753 0.89597 0.92737 0.84112 0.82726 0.73843 0.91437 0.91171 0.80224 0.80545 0.81087 0.81639 0.87867 0.86996 0.88232 0.87691 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.53 -29.52 9.66 25.60 0.25 -29.28 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.09 -3.10 4.92 30.59 0.15 -2.95 16 11 C -0.14 -3.58 4.84 30.59 0.15 -3.43 16 12 C 0.08 1.92 3.21 44.17 0.14 2.07 16 13 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 14 N -0.84 -21.40 8.94 -171.81 -1.54 -22.94 16 15 C 0.52 13.04 7.08 87.66 0.62 13.66 16 16 O -0.57 -19.57 16.25 -3.05 -0.05 -19.62 16 17 N -0.71 -11.74 5.56 -463.06 -2.57 -14.31 16 18 C 0.12 1.98 5.68 86.38 0.49 2.47 16 19 C -0.62 -3.33 5.92 71.98 0.43 -2.91 16 20 S 2.42 28.17 4.66 -56.49 -0.26 27.91 16 21 O -0.98 -20.53 18.10 -127.37 -2.30 -22.84 16 22 O -0.98 -19.99 18.10 -127.37 -2.31 -22.29 16 23 C -0.56 -1.85 6.09 71.98 0.44 -1.41 16 24 C -0.18 -1.62 5.75 -10.79 -0.06 -1.68 16 25 C -0.18 -1.43 10.18 30.62 0.31 -1.12 16 26 C -0.15 -0.86 10.26 30.62 0.31 -0.55 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 29 H 0.02 0.92 7.57 -2.39 -0.02 0.91 16 30 H 0.05 1.72 6.87 -2.39 -0.02 1.71 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.35 9.43 8.58 -89.69 -0.77 8.66 16 35 H 0.36 8.55 7.55 -89.70 -0.68 7.87 16 36 H 0.42 3.68 8.47 -92.71 -0.79 2.90 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.18 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.18 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.17 -0.38 7.88 -2.39 -0.02 -0.40 16 43 H 0.10 1.17 8.06 -2.39 -0.02 1.15 16 44 H 0.11 0.61 8.03 -2.39 -0.02 0.59 16 45 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -89.76 401.08 -4.34 -94.10 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -1.30 Total: 18.35 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.81 Total: -25.07 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.81 Total: -95.71 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -4.66 Total: -64.75 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Atomic # 16 Polarization: 28.17 SS G_CDS: -0.26 Total: 27.91 kcal Total: -89.76 -4.34 -94.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346493975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.261 kcal (2) G-P(sol) polarization free energy of solvation -89.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds