Wall clock time and date at job start Sat Apr 11 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46906 * 110.99909 * 66.04186 * 13 12 10 15 15 C 1.51220 * 108.78713 * 209.14675 * 14 13 12 16 16 C 1.38077 * 120.28547 * 110.42018 * 15 14 13 17 17 C 1.38989 * 118.14593 * 179.75703 * 16 15 14 18 18 C 1.38070 * 119.22993 * 359.95759 * 17 16 15 19 19 N 1.31958 * 121.08279 * 0.09066 * 18 17 16 20 20 C 1.32596 * 121.44685 * 0.07664 * 19 18 17 21 21 N 1.38908 * 120.22942 * 179.27068 * 20 19 18 22 22 C 1.47720 * 110.76691 * 8.09963 * 21 20 19 23 23 C 1.53927 * 106.04184 * 207.86670 * 22 21 20 24 24 H 1.09000 * 110.23628 * 259.76606 * 23 22 21 25 25 O 1.42897 * 110.23525 * 137.87456 * 23 22 21 26 26 C 1.54087 * 105.53159 * 18.77495 * 23 22 21 27 27 C 1.47135 * 110.81364 * 250.16173 * 21 20 19 28 28 H 1.08999 * 109.56833 * 34.06172 * 27 21 20 29 29 C 1.46140 * 110.99773 * 191.52121 * 13 12 10 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.08999 * 109.58789 * 328.94055 * 14 13 12 35 35 H 1.09006 * 109.58181 * 89.35486 * 14 13 12 36 36 H 1.08004 * 120.92755 * 359.72459 * 16 15 14 37 37 H 1.07998 * 120.38801 * 179.97438 * 17 16 15 38 38 H 1.07998 * 119.46049 * 180.11465 * 18 17 16 39 39 H 1.09000 * 110.14483 * 327.01437 * 22 21 20 40 40 H 1.09000 * 110.13795 * 88.72592 * 22 21 20 41 41 H 0.96696 * 113.99992 * 61.46147 * 25 23 22 42 42 H 1.09001 * 110.25295 * 119.24206 * 26 23 22 43 43 H 1.08999 * 110.25599 * 241.17725 * 26 23 22 44 44 H 1.08998 * 108.68664 * 288.83223 * 29 13 12 45 45 H 1.09000 * 108.68555 * 46.78086 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9630 -6.0243 1.2281 15 6 4.3216 -6.6269 0.9487 16 6 5.4567 -5.8430 1.0089 17 6 6.6828 -6.4438 0.7492 18 6 6.7230 -7.7898 0.4441 19 7 5.6186 -8.5103 0.3941 20 6 4.4303 -7.9723 0.6324 21 7 3.2824 -8.7510 0.5581 22 6 3.6273 -10.1777 0.3916 23 6 2.4465 -10.8155 -0.3623 24 1 1.7951 -11.3430 0.3345 25 8 2.9272 -11.7133 -1.3647 26 6 1.6906 -9.6416 -1.0140 27 6 2.4727 -8.3782 -0.6125 28 1 3.1288 -8.0800 -1.4302 29 6 1.5230 -7.2448 -0.3053 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 3.0847 -5.0138 1.6182 35 1 2.4338 -6.6382 1.9569 36 1 5.3935 -4.7923 1.2504 37 1 7.5937 -5.8647 0.7858 38 1 7.6739 -8.2608 0.2435 39 1 4.5427 -10.2771 -0.1918 40 1 3.7496 -10.6504 1.3661 41 1 3.4428 -12.4531 -1.0156 42 1 1.6837 -9.7526 -2.0983 43 1 0.6702 -9.5923 -0.6337 44 1 0.9213 -7.5185 0.5614 45 1 0.8587 -7.1049 -1.1581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347895556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:26 Heat of formation + Delta-G solvation = -11.696836 kcal Electronic energy + Delta-G solvation = -29270.885703 eV Core-core repulsion = 25288.954896 eV Total energy + Delta-G solvation = -3981.930806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18983 -38.86923 -38.55907 -36.82742 -35.74742 -33.85684 -32.69095 -32.45976 -31.23304 -30.10095 -29.10815 -27.36823 -26.01775 -24.71961 -23.54273 -22.84119 -21.33187 -20.70945 -20.43977 -19.11339 -18.13050 -17.85405 -17.22542 -16.44195 -16.21761 -15.54411 -15.42263 -15.10488 -14.78228 -14.54194 -14.31657 -14.07766 -13.95304 -13.76214 -13.49881 -13.46754 -13.15211 -12.74625 -12.51044 -12.44437 -12.00872 -11.88806 -11.62899 -11.51702 -11.35138 -11.29039 -11.12676 -11.00704 -10.90770 -10.36022 -10.25516 -10.23372 -9.79866 -9.51125 -9.38623 -9.22497 -8.45721 -8.08850 -7.97719 -7.89162 -6.43036 -3.83598 1.27110 1.51863 3.14932 3.25767 3.32242 3.42548 3.73805 3.89933 3.95404 4.14613 4.24744 4.36480 4.43441 4.70981 4.79569 5.00109 5.05478 5.12192 5.14843 5.22460 5.23914 5.25559 5.33013 5.40885 5.54408 5.57389 5.65677 5.67490 5.73801 5.80534 5.87151 5.92582 5.95857 6.01046 6.12198 6.21998 6.28019 6.54505 6.59949 6.76025 7.16661 7.29119 7.35606 7.38586 7.54013 8.05047 8.06936 8.60541 9.17038 9.53498 10.04860 10.74806 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003132 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.521591 B = 8937.505302 C =10221.047290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.051 3.949 13 N -0.522 5.522 14 C 0.111 3.889 15 C -0.104 4.104 16 C -0.031 4.031 17 C -0.193 4.193 18 C 0.106 3.894 19 N -0.522 5.522 20 C 0.296 3.704 21 N -0.455 5.455 22 C 0.008 3.992 23 C 0.097 3.903 24 H 0.069 0.931 25 O -0.563 6.563 26 C -0.113 4.113 27 C 0.085 3.915 28 H 0.065 0.935 29 C 0.070 3.930 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.379 0.621 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -19.715 1.801 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.080 4.080 13 N -0.246 5.246 14 C -0.016 4.016 15 C -0.108 4.108 16 C -0.058 4.058 17 C -0.213 4.213 18 C -0.052 4.052 19 N -0.235 5.235 20 C 0.065 3.935 21 N -0.175 5.175 22 C -0.119 4.119 23 C 0.038 3.962 24 H 0.087 0.913 25 O -0.368 6.368 26 C -0.152 4.152 27 C -0.022 4.022 28 H 0.084 0.916 29 C -0.059 4.059 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.226 0.774 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.221 -19.869 1.293 20.353 hybrid contribution -0.041 1.205 0.564 1.331 sum 4.180 -18.664 1.857 19.216 Atomic orbital electron populations 1.69616 1.05927 1.28028 1.50738 1.25253 0.95615 0.99689 0.97411 0.85822 0.79697 0.81259 0.77696 1.19253 1.20781 1.20804 1.19723 0.93333 0.82169 1.47401 0.87884 1.41876 1.09191 1.04581 1.64508 1.19721 0.88466 0.84493 0.84487 1.90499 1.13546 1.86911 1.54947 1.21832 0.93653 0.90831 1.01713 1.60633 1.26494 1.01951 1.35506 1.21015 0.89759 1.01277 0.89588 1.20189 0.96914 0.92241 1.01481 1.21549 0.90975 1.00362 0.92899 1.22077 0.98890 0.96268 1.04102 1.22362 0.95730 0.91226 0.95870 1.67537 0.98635 1.40245 1.17092 1.19505 0.88537 0.90285 0.95198 1.61354 1.14021 1.03198 1.38970 1.23562 0.99326 0.87393 1.01651 1.22464 0.93983 0.90582 0.89192 0.91312 1.86559 1.74087 1.40563 1.35626 1.22274 0.99130 0.91347 1.02424 1.21865 0.94921 0.94796 0.90610 0.91631 1.21539 0.94710 0.88472 1.01142 0.91944 0.77524 0.93229 0.89209 0.88557 0.93397 0.83800 0.85042 0.83280 0.89306 0.89963 0.77367 0.89213 0.89514 0.94162 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 10 C 0.44 9.99 7.20 -10.98 -0.08 9.91 16 11 O -0.58 -14.56 14.30 5.55 0.08 -14.48 16 12 C 0.05 0.87 5.43 -4.97 -0.03 0.84 16 13 N -0.52 -8.69 4.13 -239.08 -0.99 -9.67 16 14 C 0.11 1.87 4.52 -4.72 -0.02 1.85 16 15 C -0.10 -1.72 5.43 -104.28 -0.57 -2.29 16 16 C -0.03 -0.50 9.81 -39.36 -0.39 -0.89 16 17 C -0.19 -2.60 10.12 -39.36 -0.40 -3.00 16 18 C 0.11 1.40 11.16 -17.56 -0.20 1.20 16 19 N -0.52 -7.81 8.28 -12.54 -0.10 -7.92 16 20 C 0.30 4.63 5.92 -155.13 -0.92 3.71 16 21 N -0.46 -6.21 4.69 -164.95 -0.77 -6.98 16 22 C 0.01 0.09 6.01 -2.89 -0.02 0.08 16 23 C 0.10 0.93 4.41 -25.68 -0.11 0.81 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 O -0.56 -5.35 13.23 -35.23 -0.47 -5.82 16 26 C -0.11 -1.15 6.34 -25.69 -0.16 -1.32 16 27 C 0.09 1.11 2.57 -68.10 -0.18 0.93 16 28 H 0.07 1.02 7.82 -51.93 -0.41 0.62 16 29 C 0.07 0.93 4.32 -5.23 -0.02 0.90 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 32 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.09 1.39 7.82 -51.93 -0.41 0.98 16 34 H 0.10 1.83 5.86 -51.93 -0.30 1.52 16 35 H 0.05 0.75 7.71 -51.93 -0.40 0.35 16 36 H 0.14 2.42 8.02 -52.48 -0.42 2.00 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.09 1.14 6.53 -51.93 -0.34 0.80 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.38 1.99 9.11 45.56 0.41 2.41 16 42 H 0.09 0.93 7.98 -51.93 -0.41 0.52 16 43 H 0.09 0.74 7.83 -51.93 -0.41 0.33 16 44 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 45 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -32.19 360.54 -9.95 -42.13 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.44 Total: 13.87 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -3.33 Total: 5.03 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -1.20 Total: -61.91 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.39 Total: -20.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.19 -9.95 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347895556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.438 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds