Wall clock time and date at job start Sat Apr 11 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46906 * 110.99909 * 66.04186 * 13 12 10 15 15 C 1.51220 * 108.78713 * 209.14675 * 14 13 12 16 16 C 1.38077 * 120.28547 * 110.42018 * 15 14 13 17 17 C 1.38989 * 118.14593 * 179.75703 * 16 15 14 18 18 C 1.38070 * 119.22993 * 359.95759 * 17 16 15 19 19 N 1.31958 * 121.08279 * 0.09066 * 18 17 16 20 20 C 1.32596 * 121.44685 * 0.07664 * 19 18 17 21 21 N 1.38908 * 120.22942 * 179.27068 * 20 19 18 22 22 C 1.47720 * 110.76691 * 8.09963 * 21 20 19 23 23 C 1.53927 * 106.04184 * 207.86670 * 22 21 20 24 24 H 1.09000 * 110.23628 * 259.76606 * 23 22 21 25 25 O 1.42897 * 110.23525 * 137.87456 * 23 22 21 26 26 C 1.54087 * 105.53159 * 18.77495 * 23 22 21 27 27 C 1.47135 * 110.81364 * 250.16173 * 21 20 19 28 28 H 1.08999 * 109.56833 * 34.06172 * 27 21 20 29 29 C 1.46140 * 110.99773 * 191.52121 * 13 12 10 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.08999 * 109.58789 * 328.94055 * 14 13 12 35 35 H 1.09006 * 109.58181 * 89.35486 * 14 13 12 36 36 H 1.08004 * 120.92755 * 359.72459 * 16 15 14 37 37 H 1.07998 * 120.38801 * 179.97438 * 17 16 15 38 38 H 1.07998 * 119.46049 * 180.11465 * 18 17 16 39 39 H 1.09000 * 110.14483 * 327.01437 * 22 21 20 40 40 H 1.09000 * 110.13795 * 88.72592 * 22 21 20 41 41 H 0.96696 * 113.99992 * 61.46147 * 25 23 22 42 42 H 1.09001 * 110.25295 * 119.24206 * 26 23 22 43 43 H 1.08999 * 110.25599 * 241.17725 * 26 23 22 44 44 H 1.08998 * 108.68664 * 288.83223 * 29 13 12 45 45 H 1.09000 * 108.68555 * 46.78086 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9630 -6.0243 1.2281 15 6 4.3216 -6.6269 0.9487 16 6 5.4567 -5.8430 1.0089 17 6 6.6828 -6.4438 0.7492 18 6 6.7230 -7.7898 0.4441 19 7 5.6186 -8.5103 0.3941 20 6 4.4303 -7.9723 0.6324 21 7 3.2824 -8.7510 0.5581 22 6 3.6273 -10.1777 0.3916 23 6 2.4465 -10.8155 -0.3623 24 1 1.7951 -11.3430 0.3345 25 8 2.9272 -11.7133 -1.3647 26 6 1.6906 -9.6416 -1.0140 27 6 2.4727 -8.3782 -0.6125 28 1 3.1288 -8.0800 -1.4302 29 6 1.5230 -7.2448 -0.3053 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 3.0847 -5.0138 1.6182 35 1 2.4338 -6.6382 1.9569 36 1 5.3935 -4.7923 1.2504 37 1 7.5937 -5.8647 0.7858 38 1 7.6739 -8.2608 0.2435 39 1 4.5427 -10.2771 -0.1918 40 1 3.7496 -10.6504 1.3661 41 1 3.4428 -12.4531 -1.0156 42 1 1.6837 -9.7526 -2.0983 43 1 0.6702 -9.5923 -0.6337 44 1 0.9213 -7.5185 0.5614 45 1 0.8587 -7.1049 -1.1581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347895556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:26 Heat of formation + Delta-G solvation = -37.440431 kcal Electronic energy + Delta-G solvation = -29272.002029 eV Core-core repulsion = 25288.954896 eV Total energy + Delta-G solvation = -3983.047132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.26468 -40.25089 -39.83225 -38.05878 -36.76154 -35.79476 -33.82320 -33.55423 -33.18049 -31.19595 -30.09094 -28.78358 -27.21769 -26.38621 -24.71362 -24.01949 -22.46188 -21.70245 -21.48638 -20.84083 -19.81945 -19.03102 -18.15769 -17.81106 -17.48342 -16.85702 -16.61946 -16.47284 -16.15421 -15.93711 -15.56999 -15.44867 -15.37592 -14.91022 -14.80757 -14.54887 -14.20974 -14.01173 -13.76909 -13.54797 -13.49403 -13.23727 -13.08448 -12.89128 -12.57436 -12.43707 -12.42943 -12.34933 -12.19463 -12.10103 -11.76846 -11.44479 -11.03678 -10.86069 -10.56873 -10.36056 -10.22289 -9.95511 -9.25281 -9.15520 -8.44089 -5.91482 0.14035 0.32647 1.36809 1.42059 1.55461 2.09966 2.28164 2.41854 2.60871 2.95639 3.23412 3.30507 3.39035 3.44346 3.59571 3.80194 3.85677 3.93901 4.04231 4.11537 4.16221 4.20574 4.27863 4.34274 4.42644 4.49906 4.53403 4.56589 4.69156 4.73184 4.74427 4.80346 4.86292 4.93417 4.96591 5.08819 5.17105 5.39903 5.43911 5.57157 5.63333 5.87224 6.03891 6.14876 6.20568 6.64570 6.87026 6.94548 7.16845 7.61146 8.16839 8.73686 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003132 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.521591 B = 8937.505302 C =10221.047290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.325 4.325 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.606 6.606 12 C 0.063 3.937 13 N -0.541 5.541 14 C 0.122 3.878 15 C -0.127 4.127 16 C -0.054 4.054 17 C -0.190 4.190 18 C 0.107 3.893 19 N -0.529 5.529 20 C 0.288 3.712 21 N -0.459 5.459 22 C 0.010 3.990 23 C 0.106 3.894 24 H 0.094 0.906 25 O -0.578 6.578 26 C -0.109 4.109 27 C 0.089 3.911 28 H 0.032 0.968 29 C 0.069 3.931 30 H 0.276 0.724 31 H 0.395 0.605 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.158 0.842 38 H 0.187 0.813 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.397 0.603 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.056 0.944 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -21.501 1.662 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.455 4.455 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.491 6.491 12 C -0.068 4.068 13 N -0.265 5.265 14 C -0.006 4.006 15 C -0.132 4.132 16 C -0.081 4.081 17 C -0.210 4.210 18 C -0.051 4.051 19 N -0.243 5.243 20 C 0.057 3.943 21 N -0.179 5.179 22 C -0.118 4.118 23 C 0.046 3.954 24 H 0.112 0.888 25 O -0.386 6.386 26 C -0.147 4.147 27 C -0.018 4.018 28 H 0.050 0.950 29 C -0.058 4.058 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.204 0.796 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.247 0.753 42 H 0.105 0.895 43 H 0.129 0.871 44 H 0.074 0.926 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.735 -21.693 1.156 22.043 hybrid contribution 0.208 1.678 0.604 1.796 sum 3.944 -20.015 1.761 20.476 Atomic orbital electron populations 1.69674 1.06757 1.29038 1.50858 1.25977 0.96489 1.02243 0.96640 0.84922 0.78083 0.77474 0.78183 1.19827 1.19855 1.19749 1.19650 0.92603 0.83936 1.49305 0.90326 1.41925 1.09264 1.04632 1.65572 1.20724 0.88435 0.85800 0.82155 1.90484 1.15363 1.87698 1.55594 1.21708 0.93232 0.88025 1.03814 1.60597 1.27086 1.03322 1.35525 1.20815 0.90440 0.99474 0.89904 1.20282 0.96820 0.93140 1.02936 1.21565 0.92457 0.99686 0.94348 1.22352 0.98802 0.96807 1.03027 1.23000 0.96680 0.91096 0.94305 1.67654 0.98885 1.40515 1.17241 1.19659 0.89507 0.90113 0.95022 1.61369 1.13358 1.04155 1.39009 1.23627 0.99624 0.86271 1.02236 1.22441 0.93251 0.90507 0.89194 0.88799 1.86521 1.74539 1.41324 1.36196 1.22293 0.99956 0.90019 1.02439 1.21845 0.94538 0.96132 0.89312 0.94976 1.21651 0.94864 0.86823 1.02503 0.91461 0.77108 0.91040 0.86824 0.91743 0.92571 0.85860 0.82388 0.79598 0.90931 0.89021 0.75291 0.89463 0.87130 0.92556 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.67 0.28 -49.20 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.33 -18.19 9.68 84.04 0.81 -17.38 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -28.94 5.29 -306.97 -1.62 -30.56 16 10 C 0.44 20.44 7.20 87.66 0.63 21.07 16 11 O -0.61 -32.12 14.30 -3.07 -0.04 -32.16 16 12 C 0.06 2.12 5.43 85.56 0.46 2.58 16 13 N -0.54 -17.86 4.13 -910.31 -3.76 -21.62 16 14 C 0.12 4.19 4.52 85.72 0.39 4.58 16 15 C -0.13 -4.35 5.43 -19.64 -0.11 -4.46 16 16 C -0.05 -1.81 9.81 22.41 0.22 -1.59 16 17 C -0.19 -5.06 10.12 22.41 0.23 -4.84 16 18 C 0.11 2.67 11.16 84.63 0.94 3.62 16 19 N -0.53 -15.45 8.28 -193.58 -1.60 -17.05 16 20 C 0.29 8.96 5.92 132.92 0.79 9.75 16 21 N -0.46 -12.00 4.69 -675.79 -3.17 -15.17 16 22 C 0.01 0.20 6.01 86.46 0.52 0.72 16 23 C 0.11 1.71 4.41 31.27 0.14 1.85 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 O -0.58 -9.52 13.23 -148.98 -1.97 -11.49 16 26 C -0.11 -1.93 6.34 31.27 0.20 -1.73 16 27 C 0.09 2.20 2.57 44.54 0.11 2.31 16 28 H 0.03 1.00 7.82 -2.39 -0.02 0.98 16 29 C 0.07 1.71 4.32 85.81 0.37 2.08 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.40 18.92 7.90 -92.71 -0.73 18.18 16 32 H 0.07 2.12 8.12 -2.38 -0.02 2.11 16 33 H 0.11 3.31 7.82 -2.39 -0.02 3.29 16 34 H 0.06 2.59 5.86 -2.39 -0.01 2.58 16 35 H 0.06 1.78 7.71 -2.38 -0.02 1.76 16 36 H 0.12 4.55 8.02 -2.91 -0.02 4.53 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.07 1.77 6.53 -2.39 -0.02 1.75 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.40 3.16 9.11 -74.06 -0.67 2.48 16 42 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 43 H 0.11 1.45 7.83 -2.39 -0.02 1.43 16 44 H 0.06 1.24 7.92 -2.39 -0.02 1.22 16 45 H 0.10 2.08 7.79 -2.39 -0.02 2.06 16 Total: -1.00 -71.68 360.54 -4.05 -75.73 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.37 Total: 38.34 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.18 Total: 18.29 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -9.87 Total: -133.61 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -2.01 Total: -43.65 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.68 -4.05 -75.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347895556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.286 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds