Wall clock time and date at job start Sat Apr 11 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34632 * 116.99917 * 2 1 4 4 O 1.21516 * 120.00346 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00013 * 179.97438 * 3 2 1 6 6 C 1.46965 * 120.59463 * 179.97438 * 5 3 2 7 7 C 1.53369 * 108.63768 * 235.20717 * 6 5 3 8 8 N 1.46960 * 108.63216 * 310.57582 * 7 6 5 9 9 C 1.34777 * 120.59507 * 235.19788 * 8 7 6 10 10 O 1.21288 * 119.99888 * 359.73063 * 9 8 7 11 11 C 1.50701 * 120.00124 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47354 * 321.10322 * 11 9 8 13 13 C 1.50703 * 109.46770 * 81.09644 * 11 9 8 14 14 H 1.08008 * 119.99997 * 32.26774 * 13 11 9 15 15 C 1.37872 * 119.99963 * 212.26774 * 13 11 9 16 16 N 1.31526 * 119.99871 * 186.77792 * 15 13 11 17 17 Si 1.86793 * 120.00260 * 6.78030 * 15 13 11 18 18 H 1.48502 * 109.47353 * 84.83930 * 17 15 13 19 19 H 1.48502 * 109.47456 * 204.84254 * 17 15 13 20 20 H 1.48500 * 109.46996 * 324.84187 * 17 15 13 21 21 C 1.50694 * 109.47189 * 201.09339 * 11 9 8 22 22 C 1.38237 * 120.00378 * 293.31811 * 21 11 9 23 23 C 1.38240 * 119.99809 * 179.78965 * 22 21 11 24 24 C 1.38236 * 119.99985 * 0.43519 * 23 22 21 25 25 C 1.38231 * 120.00258 * 359.82024 * 24 23 22 26 26 C 1.38235 * 119.99963 * 359.97288 * 25 24 23 27 27 C 1.46971 * 118.81196 * 55.48014 * 8 7 6 28 28 C 1.46963 * 120.59521 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.46863 * 299.99941 * 1 2 3 30 30 H 1.08998 * 109.46663 * 60.00143 * 1 2 3 31 31 H 1.08994 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.61014 * 115.45870 * 6 5 3 33 33 H 1.09003 * 109.75158 * 355.04008 * 6 5 3 34 34 H 1.09000 * 109.61315 * 190.83225 * 7 6 5 35 35 H 1.09002 * 109.60901 * 70.31944 * 7 6 5 36 36 H 0.96999 * 119.99708 * 180.02562 * 16 15 13 37 37 H 1.07996 * 119.99990 * 359.97438 * 22 21 11 38 38 H 1.08002 * 119.99707 * 180.27476 * 23 22 21 39 39 H 1.07999 * 119.99465 * 179.83157 * 24 23 22 40 40 H 1.07995 * 120.00220 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.00046 * 180.02562 * 26 25 24 42 42 H 1.08996 * 109.60871 * 64.26560 * 27 8 7 43 43 H 1.09004 * 109.60936 * 184.77414 * 27 8 7 44 44 H 1.08994 * 109.60979 * 244.54017 * 28 5 3 45 45 H 1.09000 * 109.60744 * 5.04615 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0900 2.5726 0.0000 7 6 5.0524 2.6221 -1.1931 8 7 5.8656 1.3980 -1.1915 9 6 7.2115 1.4685 -1.1911 10 8 7.7621 2.5492 -1.1970 11 6 8.0323 0.2046 -1.1889 12 1 7.5592 -0.5347 -0.5427 13 6 8.1219 -0.3385 -2.5918 14 1 8.1276 0.3382 -3.4336 15 6 8.1967 -1.6992 -2.8007 16 7 8.4088 -2.1680 -4.0112 17 14 7.9968 -2.8771 -1.3648 18 1 6.5527 -3.1326 -1.1314 19 1 8.6821 -4.1573 -1.6755 20 1 8.5967 -2.2777 -0.1457 21 6 9.4174 0.5061 -0.6775 22 6 10.2652 1.3133 -1.4127 23 6 11.5342 1.5933 -0.9414 24 6 11.9586 1.0588 0.2607 25 6 11.1128 0.2473 0.9933 26 6 9.8422 -0.0293 0.5241 27 6 5.1848 0.0955 -1.1967 28 6 4.2224 0.0460 0.0017 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.6502 2.6930 0.9272 33 1 3.3548 3.3725 -0.0896 34 1 5.7019 3.4929 -1.1033 35 1 4.4827 2.6817 -2.1205 36 1 8.4610 -3.1254 -4.1582 37 1 9.9350 1.7276 -2.3538 38 1 12.1950 2.2276 -1.5137 39 1 12.9511 1.2754 0.6275 40 1 11.4442 -0.1700 1.9326 41 1 9.1812 -0.6629 1.0967 42 1 4.6244 -0.0207 -2.1243 43 1 5.9218 -0.7029 -1.1093 44 1 4.7921 -0.0139 0.9290 45 1 3.5729 -0.8247 -0.0884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361953658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:29 Heat of formation + Delta-G solvation = -70.471795 kcal Electronic energy + Delta-G solvation = -29423.791482 eV Core-core repulsion = 25407.019251 eV Total energy + Delta-G solvation = -4016.772231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75795 -39.67491 -38.32499 -37.21215 -36.18537 -33.97789 -33.60561 -31.76032 -31.17395 -30.13071 -28.55144 -27.87490 -26.78391 -24.12958 -23.55570 -22.64335 -21.85441 -21.20308 -20.16612 -18.97605 -17.66352 -17.22043 -17.17781 -16.61491 -16.28825 -16.04347 -15.48426 -14.96333 -14.85545 -14.60329 -14.45345 -14.16477 -14.05603 -13.87461 -13.18726 -13.11114 -12.80722 -12.74692 -12.54698 -12.40481 -12.23989 -12.05086 -11.88803 -11.52477 -11.32795 -11.29477 -11.11693 -10.96079 -10.90767 -10.54455 -10.52536 -10.27984 -9.99039 -9.64540 -9.23179 -8.90982 -8.79419 -8.12318 -8.10724 -7.83462 -6.34883 -4.38429 2.01230 2.13816 2.21546 2.70696 3.04012 3.17685 3.20263 3.40976 3.48861 3.79621 4.15746 4.58818 4.85214 4.87379 4.97141 4.97554 5.05033 5.10919 5.23239 5.30474 5.36825 5.48746 5.53786 5.57742 5.61880 5.68881 5.76305 5.90305 5.96141 5.99852 6.09868 6.12492 6.22219 6.29528 6.34336 6.42004 6.71281 6.85422 6.90252 7.16365 7.19577 7.23582 7.27085 7.59394 7.77902 7.90050 8.15257 8.20232 8.66972 8.91177 9.21736 10.76415 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.004056 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.306366 B = 6901.917850 C = 7898.758891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.577 6.577 5 N -0.590 5.590 6 C 0.115 3.885 7 C 0.098 3.902 8 N -0.616 5.616 9 C 0.540 3.460 10 O -0.552 6.552 11 C 0.034 3.966 12 H 0.059 0.941 13 C -0.509 4.509 14 H 0.082 0.918 15 C 0.087 3.913 16 N -0.879 5.879 17 Si 0.853 3.147 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.251 1.251 21 C -0.037 4.037 22 C -0.064 4.064 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.133 4.133 26 C -0.133 4.133 27 C 0.100 3.900 28 C 0.092 3.908 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.269 0.731 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 1.862 9.462 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.405 3.595 4 O -0.467 6.467 5 N -0.331 5.331 6 C -0.007 4.007 7 C -0.026 4.026 8 N -0.350 5.350 9 C 0.332 3.668 10 O -0.429 6.429 11 C 0.013 3.987 12 H 0.077 0.923 13 C -0.547 4.547 14 H 0.100 0.900 15 C -0.118 4.118 16 N -0.514 5.514 17 Si 0.678 3.322 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.175 1.175 21 C -0.039 4.039 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.025 4.025 28 C -0.031 4.031 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.833 2.541 9.320 13.089 hybrid contribution -0.225 -0.963 0.516 1.115 sum -9.058 1.578 9.835 13.464 Atomic orbital electron populations 1.23176 0.74588 1.03390 1.02599 1.86244 1.24005 1.31024 1.87063 1.18019 0.83138 0.82112 0.76249 1.90972 1.64227 1.34927 1.56577 1.46879 1.01821 1.08807 1.75568 1.22110 0.95413 0.83730 0.99437 1.21885 0.93397 0.90004 0.97332 1.47945 1.05799 1.05919 1.75337 1.21266 0.81017 0.91979 0.72569 1.90585 1.70737 1.30951 1.50616 1.18395 0.89004 0.91670 0.99636 0.92349 1.20440 1.52991 0.92635 0.88613 0.90037 1.24951 0.93605 0.97788 0.95498 1.69864 1.46511 1.14149 1.20865 0.87230 0.79165 0.81445 0.84325 1.19340 1.20847 1.17525 1.20103 0.97189 0.94369 0.92192 1.20913 0.92317 0.95824 0.99133 1.21064 0.96585 1.00926 0.96537 1.20879 0.99089 0.99852 0.96090 1.20873 0.94596 1.00035 0.99654 1.21033 0.96483 1.01214 0.96380 1.22209 0.96064 0.86737 0.97452 1.22390 0.94262 0.86630 0.99806 0.92014 0.91879 0.88022 0.90512 0.87771 0.87612 0.91413 0.92038 0.86118 0.87117 0.87376 0.87338 0.87236 0.90650 0.87256 0.90510 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -4.52 9.20 -40.30 -0.37 -4.89 16 3 C 0.65 9.23 8.43 54.06 0.46 9.69 16 4 O -0.58 -9.43 15.54 -19.28 -0.30 -9.73 16 5 N -0.59 -7.91 2.95 -178.03 -0.52 -8.43 16 6 C 0.12 1.47 6.59 -3.60 -0.02 1.45 16 7 C 0.10 1.43 6.59 -3.60 -0.02 1.40 16 8 N -0.62 -10.62 2.94 -172.23 -0.51 -11.13 16 9 C 0.54 11.18 6.81 -10.98 -0.07 11.11 16 10 O -0.55 -12.54 14.55 5.55 0.08 -12.46 16 11 C 0.03 0.75 1.07 -94.08 -0.10 0.64 16 12 H 0.06 1.19 3.66 -51.93 -0.19 1.00 16 13 C -0.51 -12.73 7.69 -34.44 -0.26 -13.00 16 14 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 15 C 0.09 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.88 -24.35 13.96 55.43 0.77 -23.57 16 17 Si 0.85 18.35 25.99 -169.99 -4.42 13.93 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.25 -5.11 5.20 56.52 0.29 -4.82 16 21 C -0.04 -0.81 4.51 -104.62 -0.47 -1.28 16 22 C -0.06 -1.38 8.03 -39.58 -0.32 -1.69 16 23 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 24 C -0.14 -2.42 10.05 -39.58 -0.40 -2.81 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.13 -2.60 8.94 -39.58 -0.35 -2.95 16 27 C 0.10 1.54 6.35 -3.38 -0.02 1.52 16 28 C 0.09 1.17 6.62 -3.39 -0.02 1.15 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.29 7.00 -51.93 -0.36 0.93 16 34 H 0.11 1.60 6.99 -51.93 -0.36 1.23 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.12 2.76 7.72 -52.49 -0.41 2.36 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.97 7.17 -52.49 -0.38 1.59 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.11 1.86 4.18 -51.93 -0.22 1.64 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.16 6.91 -51.93 -0.36 0.80 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -31.36 363.51 -7.40 -38.76 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.17 Total: 8.76 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.44 Total: 3.29 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.26 Total: -43.14 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.59 Total: -27.08 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.42 Total: 13.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.36 -7.40 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361953658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.713 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds