Wall clock time and date at job start Sat Apr 11 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34635 * 117.00280 * 2 1 4 4 O 1.21508 * 120.00065 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.46964 * 120.59344 * 180.02562 * 5 3 2 7 7 C 1.53370 * 108.63528 * 124.75269 * 6 5 3 8 8 N 1.46967 * 108.63617 * 49.42527 * 7 6 5 9 9 C 1.34773 * 120.59639 * 124.75226 * 8 7 6 10 10 O 1.21285 * 120.00069 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00180 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.47447 * 59.99606 * 11 9 8 13 13 C 1.50703 * 109.46615 * 299.99386 * 11 9 8 14 14 H 1.08008 * 119.99560 * 125.77578 * 13 11 9 15 15 C 1.37872 * 120.00329 * 305.77822 * 13 11 9 16 16 N 1.31513 * 119.99949 * 5.09129 * 15 13 11 17 17 Si 1.86800 * 119.99800 * 185.09121 * 15 13 11 18 18 H 1.48500 * 109.47580 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46917 * 119.99928 * 17 15 13 20 20 H 1.48501 * 109.47032 * 239.99824 * 17 15 13 21 21 C 1.50702 * 109.47136 * 180.02562 * 11 9 8 22 22 C 1.38234 * 119.99784 * 294.80398 * 21 11 9 23 23 C 1.38236 * 119.99917 * 179.81337 * 22 21 11 24 24 C 1.38239 * 119.99675 * 0.39252 * 23 22 21 25 25 C 1.38227 * 120.00358 * 359.86287 * 24 23 22 26 26 C 1.38231 * 119.99903 * 115.07947 * 21 11 9 27 27 C 1.46964 * 118.81016 * 304.77391 * 8 7 6 28 28 C 1.46967 * 120.59639 * 359.97438 * 5 3 2 29 29 H 1.09008 * 109.46706 * 59.99930 * 1 2 3 30 30 H 1.08997 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46982 * 300.00606 * 1 2 3 32 32 H 1.08995 * 109.60859 * 5.00200 * 6 5 3 33 33 H 1.08999 * 109.75066 * 244.58041 * 6 5 3 34 34 H 1.09003 * 109.60618 * 169.16469 * 7 6 5 35 35 H 1.08996 * 109.60670 * 289.68010 * 7 6 5 36 36 H 0.97003 * 119.99688 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.00065 * 359.97438 * 22 21 11 38 38 H 1.08001 * 120.00086 * 180.22721 * 23 22 21 39 39 H 1.08005 * 119.99567 * 179.83342 * 24 23 22 40 40 H 1.07998 * 120.00416 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.00176 * 359.97438 * 26 21 11 42 42 H 1.09002 * 109.61063 * 295.48282 * 27 8 7 43 43 H 1.08992 * 109.61109 * 174.97183 * 27 8 7 44 44 H 1.09003 * 109.60691 * 354.98671 * 28 5 3 45 45 H 1.09000 * 109.60900 * 115.50084 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4092 1.2700 0.0005 6 6 4.0900 2.5724 0.0011 7 6 5.0508 2.6227 1.1955 8 7 5.8639 1.3984 1.1960 9 6 7.2098 1.4688 1.1965 10 8 7.7605 2.5494 1.1961 11 6 8.0305 0.2049 1.1965 12 1 7.7978 -0.3794 0.3063 13 6 7.7078 -0.6035 2.4267 14 1 7.3983 -1.6337 2.3300 15 6 7.8076 -0.0280 3.6756 16 7 8.0866 1.2522 3.7893 17 14 7.5465 -1.0666 5.2061 18 1 7.2479 -2.4662 4.8096 19 1 8.7763 -1.0400 6.0381 20 1 6.4083 -0.5194 5.9874 21 6 9.4957 0.5574 1.1977 22 6 10.0510 1.2079 0.1118 23 6 11.3942 1.5347 0.1146 24 6 12.1838 1.2036 1.1999 25 6 11.6297 0.5484 2.2836 26 6 10.2856 0.2251 2.2824 27 6 5.1831 0.0960 1.1954 28 6 4.2223 0.0458 0.0017 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.3530 3.3704 0.0905 33 1 4.6513 2.6951 -0.9252 34 1 5.7005 3.4933 1.1059 35 1 4.4798 2.6829 2.1220 36 1 8.1564 1.6571 4.6680 37 1 9.4349 1.4632 -0.7377 38 1 11.8273 2.0462 -0.7323 39 1 13.2338 1.4566 1.2009 40 1 12.2466 0.2894 3.1313 41 1 9.8526 -0.2868 3.1291 42 1 4.6214 -0.0236 2.1219 43 1 5.9201 -0.7020 1.1059 44 1 3.5726 -0.8248 0.0917 45 1 4.7933 -0.0150 -0.9248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361953659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:31 Heat of formation + Delta-G solvation = -64.334676 kcal Electronic energy + Delta-G solvation = -29743.215842 eV Core-core repulsion = 25726.709737 eV Total energy + Delta-G solvation = -4016.506105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57632 -39.27581 -38.03998 -36.86132 -35.95966 -33.92203 -33.32174 -31.36150 -30.72476 -29.68978 -28.29701 -27.54312 -26.50236 -24.11331 -23.42719 -22.43824 -21.30560 -20.85995 -19.95382 -18.76603 -17.63533 -17.10130 -16.76178 -16.47163 -15.75908 -15.40112 -15.12213 -14.76527 -14.68061 -14.39093 -14.23196 -13.91788 -13.88017 -13.70806 -13.00707 -12.81776 -12.60325 -12.42825 -12.29122 -12.13655 -11.90879 -11.73784 -11.45507 -11.21383 -11.05659 -10.97238 -10.94327 -10.80803 -10.78850 -10.46182 -10.27672 -10.11521 -9.79131 -9.44101 -8.94549 -8.70392 -8.34322 -7.80984 -7.62214 -7.45240 -6.24374 -4.37558 2.17088 2.45241 2.55209 2.85134 3.13292 3.24931 3.25327 3.83073 4.02276 4.12702 4.28926 4.93076 4.99076 5.04532 5.12029 5.13970 5.18547 5.32270 5.38291 5.53772 5.64359 5.73263 5.79517 5.88417 5.91320 5.98387 6.07358 6.24469 6.26204 6.31998 6.44003 6.51528 6.56039 6.58003 6.72702 6.80074 7.03810 7.17066 7.36565 7.43623 7.47362 7.56047 7.63296 7.72731 8.08667 8.19846 8.29818 8.45939 8.68237 9.26052 9.62462 10.76526 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.003999 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.663445 B = 6999.728023 C = 8102.144481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.648 3.352 4 O -0.581 6.581 5 N -0.588 5.588 6 C 0.115 3.885 7 C 0.104 3.896 8 N -0.615 5.615 9 C 0.561 3.439 10 O -0.545 6.545 11 C 0.057 3.943 12 H 0.056 0.944 13 C -0.538 4.538 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.843 5.843 17 Si 0.883 3.117 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.283 1.283 21 C -0.019 4.019 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.059 4.059 27 C 0.108 3.892 28 C 0.091 3.909 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.266 0.734 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -4.134 -6.802 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.471 6.471 5 N -0.328 5.328 6 C -0.007 4.007 7 C -0.020 4.020 8 N -0.350 5.350 9 C 0.353 3.647 10 O -0.421 6.421 11 C 0.035 3.965 12 H 0.074 0.926 13 C -0.576 4.576 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.475 5.475 17 Si 0.710 3.290 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.020 4.020 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.166 4.166 26 C -0.077 4.077 27 C -0.016 4.016 28 C -0.032 4.032 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.078 0.922 43 H 0.140 0.860 44 H 0.115 0.885 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.261 -3.093 -6.652 10.322 hybrid contribution -0.370 -0.272 1.191 1.276 sum -7.631 -3.365 -5.462 9.969 Atomic orbital electron populations 1.23147 0.74853 1.03222 1.02516 1.86236 1.23793 1.31181 1.87189 1.18045 0.83291 0.82006 0.76391 1.90960 1.64341 1.34945 1.56847 1.46931 1.01665 1.09085 1.75147 1.22136 0.95401 0.83452 0.99697 1.21689 0.93185 0.90843 0.96300 1.47739 1.05885 1.04840 1.76530 1.20977 0.80391 0.91684 0.71676 1.90530 1.70461 1.31274 1.49813 1.17934 0.88631 0.91811 0.98092 0.92612 1.20752 1.49552 0.98022 0.89238 0.91093 1.25026 0.94359 0.94914 0.99200 1.70066 1.43707 1.09494 1.24271 0.86659 0.78193 0.80825 0.83324 1.19273 1.20612 1.20944 1.19828 0.95706 0.94174 0.92260 1.20876 0.94378 0.99270 0.98702 1.20785 0.94508 1.02486 0.98301 1.20803 0.98520 1.01726 0.95065 1.21074 0.96147 1.01580 0.97835 1.21429 0.91483 0.96666 0.98111 1.22078 0.95765 0.87953 0.95839 1.22412 0.94244 0.86134 1.00424 0.92102 0.88135 0.92006 0.88322 0.90775 0.88110 0.92394 0.92310 0.88073 0.87967 0.88088 0.87981 0.84584 0.92201 0.86027 0.88545 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -4.80 9.20 -40.31 -0.37 -5.17 16 3 C 0.65 9.96 8.43 54.05 0.46 10.42 16 4 O -0.58 -10.26 15.54 -19.28 -0.30 -10.56 16 5 N -0.59 -8.64 2.95 -178.31 -0.53 -9.17 16 6 C 0.12 1.70 6.59 -3.60 -0.02 1.67 16 7 C 0.10 1.82 6.59 -3.60 -0.02 1.79 16 8 N -0.61 -11.81 2.95 -172.52 -0.51 -12.32 16 9 C 0.56 12.70 5.31 -10.99 -0.06 12.64 16 10 O -0.54 -14.16 14.57 5.55 0.08 -14.08 16 11 C 0.06 1.25 1.89 -94.07 -0.18 1.07 16 12 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 13 C -0.54 -12.13 5.44 -34.44 -0.19 -12.32 16 14 H 0.07 1.53 7.67 -52.48 -0.40 1.13 16 15 C 0.07 1.72 3.19 -17.82 -0.06 1.67 16 16 N -0.84 -21.92 10.42 55.43 0.58 -21.34 16 17 Si 0.88 18.89 29.54 -169.99 -5.02 13.87 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.02 -0.43 4.50 -104.62 -0.47 -0.90 16 22 C -0.11 -2.42 8.75 -39.58 -0.35 -2.77 16 23 C -0.14 -2.78 10.05 -39.58 -0.40 -3.17 16 24 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 25 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 26 C -0.06 -1.36 8.00 -39.58 -0.32 -1.67 16 27 C 0.11 1.76 5.79 -3.62 -0.02 1.74 16 28 C 0.09 1.21 6.61 -3.62 -0.02 1.18 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.43 6.99 -51.93 -0.36 1.07 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.14 3.29 4.97 -52.49 -0.26 3.03 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.12 2.02 4.79 -51.93 -0.25 1.77 16 44 H 0.10 1.12 6.91 -51.93 -0.36 0.76 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -30.67 361.81 -8.17 -38.85 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.18 Total: 8.11 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.38 Total: 6.36 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.46 Total: -42.82 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.59 Total: -29.81 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.67 -8.17 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361953659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.488 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds