Wall clock time and date at job start Sat Apr 11 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34635 * 117.00280 * 2 1 4 4 O 1.21508 * 120.00065 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.46964 * 120.59344 * 180.02562 * 5 3 2 7 7 C 1.53370 * 108.63528 * 124.75269 * 6 5 3 8 8 N 1.46967 * 108.63617 * 49.42527 * 7 6 5 9 9 C 1.34773 * 120.59639 * 124.75226 * 8 7 6 10 10 O 1.21285 * 120.00069 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00180 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.47447 * 59.99606 * 11 9 8 13 13 C 1.50703 * 109.46615 * 299.99386 * 11 9 8 14 14 H 1.08008 * 119.99560 * 125.77578 * 13 11 9 15 15 C 1.37872 * 120.00329 * 305.77822 * 13 11 9 16 16 N 1.31513 * 119.99949 * 5.09129 * 15 13 11 17 17 Si 1.86800 * 119.99800 * 185.09121 * 15 13 11 18 18 H 1.48500 * 109.47580 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46917 * 119.99928 * 17 15 13 20 20 H 1.48501 * 109.47032 * 239.99824 * 17 15 13 21 21 C 1.50702 * 109.47136 * 180.02562 * 11 9 8 22 22 C 1.38234 * 119.99784 * 294.80398 * 21 11 9 23 23 C 1.38236 * 119.99917 * 179.81337 * 22 21 11 24 24 C 1.38239 * 119.99675 * 0.39252 * 23 22 21 25 25 C 1.38227 * 120.00358 * 359.86287 * 24 23 22 26 26 C 1.38231 * 119.99903 * 115.07947 * 21 11 9 27 27 C 1.46964 * 118.81016 * 304.77391 * 8 7 6 28 28 C 1.46967 * 120.59639 * 359.97438 * 5 3 2 29 29 H 1.09008 * 109.46706 * 59.99930 * 1 2 3 30 30 H 1.08997 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46982 * 300.00606 * 1 2 3 32 32 H 1.08995 * 109.60859 * 5.00200 * 6 5 3 33 33 H 1.08999 * 109.75066 * 244.58041 * 6 5 3 34 34 H 1.09003 * 109.60618 * 169.16469 * 7 6 5 35 35 H 1.08996 * 109.60670 * 289.68010 * 7 6 5 36 36 H 0.97003 * 119.99688 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.00065 * 359.97438 * 22 21 11 38 38 H 1.08001 * 120.00086 * 180.22721 * 23 22 21 39 39 H 1.08005 * 119.99567 * 179.83342 * 24 23 22 40 40 H 1.07998 * 120.00416 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.00176 * 359.97438 * 26 21 11 42 42 H 1.09002 * 109.61063 * 295.48282 * 27 8 7 43 43 H 1.08992 * 109.61109 * 174.97183 * 27 8 7 44 44 H 1.09003 * 109.60691 * 354.98671 * 28 5 3 45 45 H 1.09000 * 109.60900 * 115.50084 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4092 1.2700 0.0005 6 6 4.0900 2.5724 0.0011 7 6 5.0508 2.6227 1.1955 8 7 5.8639 1.3984 1.1960 9 6 7.2098 1.4688 1.1965 10 8 7.7605 2.5494 1.1961 11 6 8.0305 0.2049 1.1965 12 1 7.7978 -0.3794 0.3063 13 6 7.7078 -0.6035 2.4267 14 1 7.3983 -1.6337 2.3300 15 6 7.8076 -0.0280 3.6756 16 7 8.0866 1.2522 3.7893 17 14 7.5465 -1.0666 5.2061 18 1 7.2479 -2.4662 4.8096 19 1 8.7763 -1.0400 6.0381 20 1 6.4083 -0.5194 5.9874 21 6 9.4957 0.5574 1.1977 22 6 10.0510 1.2079 0.1118 23 6 11.3942 1.5347 0.1146 24 6 12.1838 1.2036 1.1999 25 6 11.6297 0.5484 2.2836 26 6 10.2856 0.2251 2.2824 27 6 5.1831 0.0960 1.1954 28 6 4.2223 0.0458 0.0017 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.3530 3.3704 0.0905 33 1 4.6513 2.6951 -0.9252 34 1 5.7005 3.4933 1.1059 35 1 4.4798 2.6829 2.1220 36 1 8.1564 1.6571 4.6680 37 1 9.4349 1.4632 -0.7377 38 1 11.8273 2.0462 -0.7323 39 1 13.2338 1.4566 1.2009 40 1 12.2466 0.2894 3.1313 41 1 9.8526 -0.2868 3.1291 42 1 4.6214 -0.0236 2.1219 43 1 5.9201 -0.7020 1.1059 44 1 3.5726 -0.8248 0.0917 45 1 4.7933 -0.0150 -0.9248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361953659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:31 Heat of formation + Delta-G solvation = -81.997227 kcal Electronic energy + Delta-G solvation = -29743.981748 eV Core-core repulsion = 25726.709737 eV Total energy + Delta-G solvation = -4017.272011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76815 -40.83135 -39.50558 -38.23094 -37.22510 -35.67169 -34.77694 -32.89851 -32.20717 -31.29892 -29.54603 -28.92921 -27.72106 -25.80880 -24.74840 -23.77783 -22.90981 -22.28456 -21.34430 -20.13033 -19.17585 -18.43315 -18.10106 -17.57395 -17.31135 -17.06533 -16.70582 -16.37654 -15.91762 -15.87759 -15.40409 -15.36149 -15.31791 -14.93862 -14.49334 -14.29197 -14.07919 -13.96598 -13.80012 -13.43236 -13.26166 -13.06601 -12.94621 -12.77377 -12.51944 -12.46242 -12.37405 -12.35180 -12.03361 -11.77872 -11.76493 -11.57916 -11.42596 -11.15054 -10.53465 -10.24788 -10.11210 -9.41646 -9.13202 -9.07312 -8.08372 -6.22830 0.84808 0.94654 1.09689 1.40094 1.48029 1.54518 1.66969 2.30892 2.42064 2.60150 2.91638 3.19909 3.32884 3.86429 3.91858 4.15752 4.23305 4.32290 4.36440 4.38457 4.39416 4.44757 4.50459 4.53292 4.57569 4.68470 4.72136 4.77584 4.85959 4.96188 5.01437 5.05038 5.16265 5.18003 5.23813 5.34057 5.44277 5.57803 5.71565 5.87565 5.92993 5.98668 6.00239 6.22086 6.42371 6.53521 6.75522 6.98060 7.14512 7.42569 7.92027 8.91616 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.003999 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.663445 B = 6999.728023 C = 8102.144481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.369 6.369 3 C 0.648 3.352 4 O -0.608 6.608 5 N -0.591 5.591 6 C 0.128 3.872 7 C 0.107 3.893 8 N -0.615 5.615 9 C 0.560 3.440 10 O -0.587 6.587 11 C 0.050 3.950 12 H 0.074 0.926 13 C -0.524 4.524 14 H 0.081 0.919 15 C 0.040 3.960 16 N -0.877 5.877 17 Si 0.931 3.069 18 H -0.253 1.253 19 H -0.289 1.289 20 H -0.294 1.294 21 C -0.042 4.042 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.157 4.157 26 C -0.086 4.086 27 C 0.107 3.893 28 C 0.102 3.898 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.255 0.745 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.050 0.950 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 -5.587 -8.140 12.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.283 6.283 3 C 0.403 3.597 4 O -0.500 6.500 5 N -0.330 5.330 6 C 0.006 3.994 7 C -0.017 4.017 8 N -0.349 5.349 9 C 0.352 3.648 10 O -0.466 6.466 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.562 4.562 14 H 0.099 0.901 15 C -0.163 4.163 16 N -0.512 5.512 17 Si 0.758 3.242 18 H -0.176 1.176 19 H -0.215 1.215 20 H -0.221 1.221 21 C -0.043 4.043 22 C -0.146 4.146 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.175 4.175 26 C -0.104 4.104 27 C -0.016 4.016 28 C -0.021 4.021 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.068 0.932 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.557 -4.616 -8.004 11.937 hybrid contribution -0.315 0.143 1.585 1.623 sum -7.872 -4.474 -6.419 11.099 Atomic orbital electron populations 1.23499 0.72830 1.05649 1.02421 1.86242 1.25704 1.29614 1.86702 1.18153 0.83290 0.82366 0.75900 1.90942 1.64950 1.36086 1.58054 1.46980 1.01846 1.09308 1.74916 1.21946 0.94790 0.83981 0.98671 1.21669 0.93032 0.89713 0.97283 1.47792 1.05320 1.06461 1.75354 1.21061 0.81379 0.91199 0.71195 1.90493 1.71600 1.32563 1.51969 1.18033 0.88697 0.91789 0.98550 0.90813 1.20973 1.47651 0.98225 0.89312 0.90099 1.25488 0.94393 0.95228 1.01227 1.70224 1.46217 1.11073 1.23637 0.85906 0.77057 0.80446 0.80790 1.17638 1.21514 1.22124 1.19986 0.96033 0.95246 0.92994 1.21054 0.95542 0.99487 0.98562 1.21198 0.93840 1.01627 0.99409 1.21200 1.00272 1.00357 0.94086 1.21351 0.95552 1.01493 0.99132 1.21399 0.92855 0.98216 0.97885 1.22162 0.96022 0.86419 0.97022 1.22399 0.93845 0.86365 0.99441 0.91905 0.84448 0.92475 0.88054 0.89491 0.89789 0.93391 0.93549 0.87543 0.84766 0.84518 0.86209 0.86520 0.93180 0.86189 0.86233 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 10.56 113.37 1.20 2.01 16 2 O -0.37 -8.68 9.20 -55.44 -0.51 -9.19 16 3 C 0.65 18.83 8.43 129.79 1.09 19.92 16 4 O -0.61 -20.86 15.54 19.81 0.31 -20.55 16 5 N -0.59 -16.37 2.95 -948.47 -2.80 -19.17 16 6 C 0.13 3.68 6.59 86.42 0.57 4.25 16 7 C 0.11 3.80 6.59 86.41 0.57 4.37 16 8 N -0.62 -23.69 2.95 -818.12 -2.41 -26.10 16 9 C 0.56 25.63 5.31 87.66 0.47 26.10 16 10 O -0.59 -31.31 14.57 -3.04 -0.04 -31.36 16 11 C 0.05 2.22 1.89 -13.03 -0.02 2.20 16 12 H 0.07 2.88 7.72 -2.39 -0.02 2.86 16 13 C -0.52 -23.54 5.44 25.60 0.14 -23.40 16 14 H 0.08 3.41 7.67 -2.91 -0.02 3.38 16 15 C 0.04 1.93 3.19 84.65 0.27 2.20 16 16 N -0.88 -46.97 10.42 21.45 0.22 -46.75 16 17 Si 0.93 39.15 29.54 68.60 2.03 41.18 16 18 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 19 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.04 -1.91 4.50 -19.87 -0.09 -2.00 16 22 C -0.13 -5.37 8.75 22.27 0.19 -5.18 16 23 C -0.14 -5.27 10.05 22.27 0.22 -5.04 16 24 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 25 C -0.16 -6.35 10.05 22.27 0.22 -6.12 16 26 C -0.09 -3.97 8.00 22.27 0.18 -3.79 16 27 C 0.11 3.38 5.79 86.40 0.50 3.88 16 28 C 0.10 2.46 6.61 86.40 0.57 3.03 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 2.89 6.99 -2.39 -0.02 2.87 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 3.27 6.99 -2.39 -0.02 3.25 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 37 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 38 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 41 H 0.12 5.77 4.97 -2.91 -0.01 5.75 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.12 3.82 4.79 -2.39 -0.01 3.81 16 44 H 0.12 2.39 6.91 -2.39 -0.02 2.37 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.20 361.81 4.11 -63.09 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 1.00 Total: 31.27 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.31 Total: 17.56 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.98 Total: -92.01 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -0.25 Total: -61.10 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -67.20 4.11 -63.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361953659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.903 kcal (2) G-P(sol) polarization free energy of solvation -67.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds