Wall clock time and date at job start Sat Apr 11 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86794 * 120.00238 * 2 1 4 4 H 1.48510 * 109.47076 * 269.99411 * 3 2 1 5 5 H 1.48498 * 109.47307 * 29.98913 * 3 2 1 6 6 H 1.48498 * 109.47452 * 149.99699 * 3 2 1 7 7 C 1.40052 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99892 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99862 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00045 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00075 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46934 * 179.97438 * 12 11 9 14 14 C 1.38339 * 120.45031 * 255.93333 * 13 12 11 15 15 C 1.38843 * 118.50565 * 179.97438 * 14 13 12 16 16 C 1.38060 * 119.32878 * 359.97438 * 15 14 13 17 17 N 1.31948 * 120.85488 * 359.97438 * 16 15 14 18 18 C 1.32423 * 121.62228 * 0.02562 * 17 16 15 19 19 N 1.39002 * 119.70550 * 180.02562 * 18 17 16 20 20 C 1.46850 * 111.00033 * 272.39977 * 19 18 17 21 21 C 1.53045 * 109.52353 * 185.83899 * 20 19 18 22 22 C 1.53117 * 109.27511 * 300.82169 * 21 20 19 23 23 C 1.50695 * 109.52001 * 177.56352 * 22 21 20 24 24 N 1.34771 * 120.00506 * 60.31247 * 23 22 21 25 25 O 1.21286 * 119.99998 * 240.31180 * 23 22 21 26 26 C 1.53114 * 109.16347 * 57.65404 * 22 21 20 27 27 C 1.46850 * 111.00237 * 36.60654 * 19 18 17 28 28 H 0.97007 * 119.99774 * 0.02562 * 1 2 3 29 29 H 0.97007 * 119.99632 * 359.97438 * 11 9 7 30 30 H 1.08995 * 109.47255 * 59.99887 * 12 11 9 31 31 H 1.09001 * 109.46490 * 299.99265 * 12 11 9 32 32 H 1.08004 * 120.74598 * 0.25131 * 14 13 12 33 33 H 1.08006 * 120.33334 * 180.02562 * 15 14 13 34 34 H 1.08005 * 119.57412 * 180.02562 * 16 15 14 35 35 H 1.08996 * 109.46101 * 305.84905 * 20 19 18 36 36 H 1.09000 * 109.46350 * 65.82493 * 20 19 18 37 37 H 1.08997 * 109.50048 * 180.87880 * 21 20 19 38 38 H 1.08996 * 109.49791 * 60.75885 * 21 20 19 39 39 H 1.09000 * 109.52239 * 297.74409 * 22 21 20 40 40 H 0.96998 * 120.00473 * 0.02562 * 24 23 22 41 41 H 0.97005 * 120.00385 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.50428 * 182.40370 * 26 22 21 43 43 H 1.08999 * 109.50521 * 62.29087 * 26 22 21 44 44 H 1.08999 * 109.46061 * 294.17964 * 27 19 18 45 45 H 1.09008 * 109.46055 * 54.14343 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 -1.4002 5 1 1.4382 2.6527 0.6998 6 1 3.5383 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9487 -3.6478 0.0005 12 6 1.2162 -4.9165 0.0011 13 6 2.1954 -6.0619 0.0004 14 6 2.4298 -6.7832 -1.1566 15 6 3.3406 -7.8301 -1.1118 16 6 3.9814 -8.1185 0.0766 17 7 3.7390 -7.4128 1.1648 18 6 2.8775 -6.4070 1.1625 19 7 2.6529 -5.6898 2.3318 20 6 1.5966 -6.3150 3.1379 21 6 1.2757 -5.4239 4.3401 22 6 2.5411 -5.2348 5.1812 23 6 2.2462 -4.3098 6.3337 24 7 1.3062 -4.6416 7.2407 25 8 2.8547 -3.2665 6.4450 26 6 3.6404 -4.6271 4.3056 27 6 3.8928 -5.5412 3.1045 28 1 -0.4850 0.8401 -0.0004 29 1 2.9188 -3.6478 0.0002 30 1 0.5892 -4.9744 -0.8886 31 1 0.5900 -4.9739 0.8915 32 1 1.9191 -6.5345 -2.0753 33 1 3.5464 -8.4125 -1.9978 34 1 4.6910 -8.9318 0.1159 35 1 0.7011 -6.4398 2.5292 36 1 1.9361 -7.2896 3.4886 37 1 0.5026 -5.8957 4.9467 38 1 0.9230 -4.4538 3.9901 39 1 2.8720 -6.2004 5.5636 40 1 0.8197 -5.4760 7.1520 41 1 1.1161 -4.0459 7.9823 42 1 4.5569 -4.5296 4.8875 43 1 3.3250 -3.6444 3.9552 44 1 4.2215 -6.5195 3.4553 45 1 4.6651 -5.1042 2.4714 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362125328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:34 Heat of formation + Delta-G solvation = -36.844283 kcal Electronic energy + Delta-G solvation = -29156.687219 eV Core-core repulsion = 25173.665937 eV Total energy + Delta-G solvation = -3983.021281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85957 -39.80142 -37.83458 -37.10041 -34.17999 -33.98738 -33.38098 -32.37569 -31.45794 -30.82430 -29.84444 -26.88840 -25.66032 -24.91952 -23.22515 -22.72313 -21.61629 -20.87539 -19.57889 -19.52795 -17.77158 -17.35809 -17.11437 -16.71383 -16.51099 -15.49241 -15.31434 -15.01496 -14.92705 -14.53960 -14.31193 -14.00882 -13.80284 -13.61572 -13.43375 -13.17727 -13.06259 -12.89261 -12.84886 -12.28405 -12.15989 -11.63039 -11.45036 -11.28108 -11.11343 -11.03287 -10.82795 -10.71048 -10.56408 -10.35522 -10.14196 -9.85301 -9.75957 -9.74411 -9.58903 -9.09367 -8.75512 -8.20544 -7.48391 -7.33843 -6.08915 -4.52576 1.10155 1.31071 2.62223 3.21125 3.28127 3.32340 3.45486 3.60241 3.76422 4.20986 4.47821 4.57770 4.69199 4.69658 4.78346 4.90352 5.02966 5.10801 5.16249 5.20884 5.29445 5.31177 5.35148 5.46287 5.56280 5.61806 5.69054 5.81118 5.86324 5.87728 6.03338 6.07475 6.17747 6.19139 6.40086 6.50099 6.61908 6.65458 6.69926 6.93661 7.23255 7.37740 7.53323 7.96580 8.05685 8.21614 8.22402 8.44896 9.13123 9.66600 10.70323 10.89956 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007429 B = 0.005094 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.009738 B = 5495.449537 C = 8235.901196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.560 3.440 10 O -0.584 6.584 11 N -0.750 5.750 12 C 0.189 3.811 13 C -0.118 4.118 14 C -0.058 4.058 15 C -0.184 4.184 16 C 0.105 3.895 17 N -0.517 5.517 18 C 0.308 3.692 19 N -0.471 5.471 20 C 0.069 3.931 21 C -0.108 4.108 22 C -0.107 4.107 23 C 0.523 3.477 24 N -0.859 5.859 25 O -0.536 6.536 26 C -0.100 4.100 27 C 0.069 3.931 28 H 0.266 0.734 29 H 0.379 0.621 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.399 0.601 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.168 -18.083 7.412 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.364 3.636 10 O -0.467 6.467 11 N -0.405 5.405 12 C 0.063 3.937 13 C -0.122 4.122 14 C -0.085 4.085 15 C -0.205 4.205 16 C -0.053 4.053 17 N -0.230 5.230 18 C 0.079 3.921 19 N -0.192 5.192 20 C -0.058 4.058 21 C -0.146 4.146 22 C -0.128 4.128 23 C 0.307 3.693 24 N -0.422 5.422 25 O -0.412 6.412 26 C -0.138 4.138 27 C -0.058 4.058 28 H 0.077 0.923 29 H 0.210 0.790 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.227 0.773 41 H 0.230 0.770 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.835 -17.058 8.006 19.454 hybrid contribution 0.475 -0.031 -0.332 0.580 sum 5.309 -17.089 7.674 19.471 Atomic orbital electron populations 1.70027 1.06983 1.27014 1.35881 1.25668 0.94563 1.00120 0.92642 0.86434 0.80335 0.81679 0.78684 1.19861 1.20526 1.18888 1.20857 0.93504 0.89380 1.54142 0.91627 1.18145 0.87090 0.82272 0.76110 1.90587 1.14134 1.86774 1.55205 1.45973 1.08347 1.03792 1.82389 1.19530 0.91460 0.81790 1.00889 1.20902 1.00171 0.98809 0.92340 1.21556 0.95599 0.93396 0.97923 1.22052 0.99038 0.99663 0.99720 1.22437 0.97455 0.97400 0.88055 1.67722 1.18250 1.05996 1.31012 1.19681 0.91953 0.88712 0.91773 1.59789 1.09159 1.45855 1.04412 1.22046 0.94577 0.95073 0.94074 1.21610 0.95407 1.02340 0.95282 1.21391 0.98469 0.98886 0.94071 1.20667 0.78757 0.86800 0.83037 1.43898 1.41948 1.26284 1.30114 1.90768 1.49900 1.25126 1.75370 1.21471 0.97458 1.00440 0.94454 1.21988 0.90432 0.98859 0.94505 0.92299 0.78995 0.93142 0.92087 0.84469 0.84987 0.83230 0.90004 0.93978 0.90894 0.89352 0.88894 0.77251 0.77040 0.90718 0.89362 0.93276 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.51 11.83 55.55 0.66 -22.85 16 2 C 0.09 2.55 5.50 -17.36 -0.10 2.46 16 3 Si 0.90 20.88 29.56 -169.99 -5.02 15.86 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.54 -15.65 9.54 -35.63 -0.34 -15.99 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.56 16.05 7.75 -12.99 -0.10 15.94 16 10 O -0.58 -18.93 15.02 5.20 0.08 -18.85 16 11 N -0.75 -16.98 5.54 -62.90 -0.35 -17.33 16 12 C 0.19 3.62 5.40 -5.19 -0.03 3.59 16 13 C -0.12 -1.81 5.28 -104.27 -0.55 -2.36 16 14 C -0.06 -0.74 9.80 -39.32 -0.39 -1.13 16 15 C -0.18 -1.95 10.10 -39.42 -0.40 -2.35 16 16 C 0.10 1.17 11.17 -17.57 -0.20 0.98 16 17 N -0.52 -7.04 9.25 -12.44 -0.12 -7.16 16 18 C 0.31 4.57 5.55 -155.01 -0.86 3.71 16 19 N -0.47 -6.87 3.89 -173.23 -0.67 -7.55 16 20 C 0.07 0.85 5.16 -3.83 -0.02 0.83 16 21 C -0.11 -1.23 5.26 -26.65 -0.14 -1.37 16 22 C -0.11 -1.20 2.59 -91.65 -0.24 -1.44 16 23 C 0.52 6.64 7.43 -10.99 -0.08 6.56 16 24 N -0.86 -7.18 8.78 31.22 0.27 -6.90 16 25 O -0.54 -9.43 16.81 5.55 0.09 -9.33 16 26 C -0.10 -1.36 4.68 -26.66 -0.12 -1.48 16 27 C 0.07 0.93 4.93 -3.83 -0.02 0.92 16 28 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 29 H 0.38 8.04 8.44 -40.82 -0.34 7.70 16 30 H 0.05 1.00 8.00 -51.93 -0.42 0.58 16 31 H 0.06 1.24 7.03 -51.93 -0.37 0.88 16 32 H 0.14 1.57 8.05 -52.48 -0.42 1.15 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 2.08 8.32 -40.82 -0.34 1.74 16 41 H 0.40 3.03 8.93 -40.82 -0.36 2.67 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.51 8.04 -51.93 -0.42 1.09 16 44 H 0.05 0.62 7.80 -51.93 -0.40 0.22 16 45 H 0.08 1.13 8.11 -51.92 -0.42 0.71 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -38.22 374.79 -9.35 -47.57 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.36 Total: 12.04 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -3.58 Total: 8.86 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.21 Total: -61.79 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: 0.17 Total: -28.19 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.22 -9.35 -47.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362125328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.728 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds