Wall clock time and date at job start Sat Apr 11 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86794 * 120.00238 * 2 1 4 4 H 1.48510 * 109.47076 * 269.99411 * 3 2 1 5 5 H 1.48498 * 109.47307 * 29.98913 * 3 2 1 6 6 H 1.48498 * 109.47452 * 149.99699 * 3 2 1 7 7 C 1.40052 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99892 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99862 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00045 * 179.97438 * 9 7 2 12 12 C 1.46502 * 120.00075 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46934 * 179.97438 * 12 11 9 14 14 C 1.38339 * 120.45031 * 255.93333 * 13 12 11 15 15 C 1.38843 * 118.50565 * 179.97438 * 14 13 12 16 16 C 1.38060 * 119.32878 * 359.97438 * 15 14 13 17 17 N 1.31948 * 120.85488 * 359.97438 * 16 15 14 18 18 C 1.32423 * 121.62228 * 0.02562 * 17 16 15 19 19 N 1.39002 * 119.70550 * 180.02562 * 18 17 16 20 20 C 1.46850 * 111.00033 * 272.39977 * 19 18 17 21 21 C 1.53045 * 109.52353 * 185.83899 * 20 19 18 22 22 C 1.53117 * 109.27511 * 300.82169 * 21 20 19 23 23 C 1.50695 * 109.52001 * 177.56352 * 22 21 20 24 24 N 1.34771 * 120.00506 * 60.31247 * 23 22 21 25 25 O 1.21286 * 119.99998 * 240.31180 * 23 22 21 26 26 C 1.53114 * 109.16347 * 57.65404 * 22 21 20 27 27 C 1.46850 * 111.00237 * 36.60654 * 19 18 17 28 28 H 0.97007 * 119.99774 * 0.02562 * 1 2 3 29 29 H 0.97007 * 119.99632 * 359.97438 * 11 9 7 30 30 H 1.08995 * 109.47255 * 59.99887 * 12 11 9 31 31 H 1.09001 * 109.46490 * 299.99265 * 12 11 9 32 32 H 1.08004 * 120.74598 * 0.25131 * 14 13 12 33 33 H 1.08006 * 120.33334 * 180.02562 * 15 14 13 34 34 H 1.08005 * 119.57412 * 180.02562 * 16 15 14 35 35 H 1.08996 * 109.46101 * 305.84905 * 20 19 18 36 36 H 1.09000 * 109.46350 * 65.82493 * 20 19 18 37 37 H 1.08997 * 109.50048 * 180.87880 * 21 20 19 38 38 H 1.08996 * 109.49791 * 60.75885 * 21 20 19 39 39 H 1.09000 * 109.52239 * 297.74409 * 22 21 20 40 40 H 0.96998 * 120.00473 * 0.02562 * 24 23 22 41 41 H 0.97005 * 120.00385 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.50428 * 182.40370 * 26 22 21 43 43 H 1.08999 * 109.50521 * 62.29087 * 26 22 21 44 44 H 1.08999 * 109.46061 * 294.17964 * 27 19 18 45 45 H 1.09008 * 109.46055 * 54.14343 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 -1.4002 5 1 1.4382 2.6527 0.6998 6 1 3.5383 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9487 -3.6478 0.0005 12 6 1.2162 -4.9165 0.0011 13 6 2.1954 -6.0619 0.0004 14 6 2.4298 -6.7832 -1.1566 15 6 3.3406 -7.8301 -1.1118 16 6 3.9814 -8.1185 0.0766 17 7 3.7390 -7.4128 1.1648 18 6 2.8775 -6.4070 1.1625 19 7 2.6529 -5.6898 2.3318 20 6 1.5966 -6.3150 3.1379 21 6 1.2757 -5.4239 4.3401 22 6 2.5411 -5.2348 5.1812 23 6 2.2462 -4.3098 6.3337 24 7 1.3062 -4.6416 7.2407 25 8 2.8547 -3.2665 6.4450 26 6 3.6404 -4.6271 4.3056 27 6 3.8928 -5.5412 3.1045 28 1 -0.4850 0.8401 -0.0004 29 1 2.9188 -3.6478 0.0002 30 1 0.5892 -4.9744 -0.8886 31 1 0.5900 -4.9739 0.8915 32 1 1.9191 -6.5345 -2.0753 33 1 3.5464 -8.4125 -1.9978 34 1 4.6910 -8.9318 0.1159 35 1 0.7011 -6.4398 2.5292 36 1 1.9361 -7.2896 3.4886 37 1 0.5026 -5.8957 4.9467 38 1 0.9230 -4.4538 3.9901 39 1 2.8720 -6.2004 5.5636 40 1 0.8197 -5.4760 7.1520 41 1 1.1161 -4.0459 7.9823 42 1 4.5569 -4.5296 4.8875 43 1 3.3250 -3.6444 3.9552 44 1 4.2215 -6.5195 3.4553 45 1 4.6651 -5.1042 2.4714 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362125328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:33 Heat of formation + Delta-G solvation = -68.216123 kcal Electronic energy + Delta-G solvation = -29158.047604 eV Core-core repulsion = 25173.665937 eV Total energy + Delta-G solvation = -3984.381667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90995 -40.83724 -39.21850 -38.86022 -35.73798 -35.12631 -34.51912 -34.30921 -32.96738 -31.86321 -31.01502 -28.78549 -26.95237 -26.30885 -24.32478 -23.74945 -22.82431 -21.88040 -21.59371 -20.58098 -19.29479 -18.70878 -18.16465 -17.72684 -17.53222 -17.44776 -16.63049 -16.23335 -16.09343 -15.86252 -15.78366 -15.33868 -15.15869 -14.89486 -14.72350 -14.47797 -14.32300 -14.05403 -14.00203 -13.78717 -13.33112 -13.27174 -13.11480 -12.76525 -12.67412 -12.59514 -12.41079 -12.22437 -12.03614 -11.77210 -11.57396 -10.92784 -10.91502 -10.79135 -10.66244 -10.61633 -10.18427 -9.76156 -9.36370 -9.19573 -8.26444 -6.81185 0.09675 0.30602 1.37696 1.39978 1.54213 1.61492 2.25184 2.50866 2.58430 2.60292 2.74376 3.39130 3.51345 3.59829 3.67363 3.71191 3.84501 3.95561 4.01192 4.13733 4.18694 4.23056 4.32868 4.37112 4.48336 4.58416 4.62052 4.64100 4.76082 4.79619 4.80105 4.93532 5.05745 5.13272 5.18550 5.33367 5.33857 5.38062 5.61422 5.89925 5.91431 5.92216 6.25047 6.30974 6.36678 6.45778 6.89890 6.98193 7.35445 7.59424 8.53524 8.71257 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007429 B = 0.005094 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.009738 B = 5495.449537 C = 8235.901196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.546 3.454 10 O -0.632 6.632 11 N -0.735 5.735 12 C 0.199 3.801 13 C -0.143 4.143 14 C -0.059 4.059 15 C -0.170 4.170 16 C 0.110 3.890 17 N -0.527 5.527 18 C 0.303 3.697 19 N -0.497 5.497 20 C 0.071 3.929 21 C -0.101 4.101 22 C -0.097 4.097 23 C 0.518 3.482 24 N -0.835 5.835 25 O -0.595 6.595 26 C -0.096 4.096 27 C 0.080 3.920 28 H 0.273 0.727 29 H 0.387 0.613 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.146 0.854 33 H 0.171 0.829 34 H 0.188 0.812 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.132 0.868 40 H 0.418 0.582 41 H 0.406 0.594 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -20.491 7.529 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.609 4.609 8 H 0.096 0.904 9 C 0.350 3.650 10 O -0.519 6.519 11 N -0.388 5.388 12 C 0.074 3.926 13 C -0.148 4.148 14 C -0.086 4.086 15 C -0.190 4.190 16 C -0.048 4.048 17 N -0.240 5.240 18 C 0.074 3.926 19 N -0.219 5.219 20 C -0.055 4.055 21 C -0.139 4.139 22 C -0.119 4.119 23 C 0.304 3.696 24 N -0.399 5.399 25 O -0.475 6.475 26 C -0.134 4.134 27 C -0.046 4.046 28 H 0.083 0.917 29 H 0.219 0.781 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.164 0.836 33 H 0.189 0.811 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.150 0.850 40 H 0.250 0.750 41 H 0.237 0.763 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.658 -19.550 8.140 22.199 hybrid contribution -0.092 0.543 -0.396 0.679 sum 6.566 -19.007 7.744 21.549 Atomic orbital electron populations 1.70182 1.09283 1.28685 1.36857 1.26857 0.95494 1.04581 0.91303 0.85133 0.78720 0.75630 0.79524 1.18160 1.19694 1.17926 1.21362 0.94350 0.90411 1.54785 0.90352 1.18431 0.86693 0.84060 0.75807 1.90535 1.16045 1.87917 1.57443 1.45618 1.08587 1.03990 1.80605 1.19399 0.92096 0.81790 0.99290 1.20552 1.01194 0.98787 0.94228 1.21761 0.95973 0.93628 0.97206 1.22415 0.97123 0.98465 1.01003 1.23171 0.97023 0.97188 0.87414 1.67795 1.17992 1.05939 1.32281 1.19625 0.92336 0.89266 0.91408 1.59738 1.09961 1.47068 1.05169 1.22070 0.93667 0.95983 0.93798 1.21567 0.96490 1.00196 0.95643 1.21350 0.97428 0.99964 0.93116 1.20933 0.78863 0.86136 0.83711 1.43698 1.40296 1.26935 1.28964 1.90746 1.52377 1.27495 1.76865 1.21361 0.98559 0.98349 0.95165 1.21857 0.89752 0.99211 0.93825 0.91692 0.78112 0.94282 0.94102 0.83588 0.81108 0.79479 0.91121 0.91683 0.87017 0.93942 0.84994 0.75000 0.76284 0.90232 0.94082 0.91567 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.98 11.83 21.84 0.26 -51.73 16 2 C 0.03 1.91 5.50 85.31 0.47 2.38 16 3 Si 0.99 43.55 29.56 68.60 2.03 45.58 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.57 -34.25 9.54 24.83 0.24 -34.02 16 8 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 9 C 0.55 33.01 7.75 86.36 0.67 33.68 16 10 O -0.63 -43.46 15.02 -4.30 -0.06 -43.53 16 11 N -0.74 -35.09 5.54 -471.15 -2.61 -37.70 16 12 C 0.20 8.08 5.40 85.63 0.46 8.54 16 13 C -0.14 -4.41 5.28 -19.63 -0.10 -4.52 16 14 C -0.06 -1.41 9.80 22.44 0.22 -1.19 16 15 C -0.17 -2.95 10.10 22.37 0.23 -2.73 16 16 C 0.11 2.03 11.17 84.63 0.95 2.97 16 17 N -0.53 -13.07 9.25 -193.26 -1.79 -14.86 16 18 C 0.30 8.79 5.55 133.05 0.74 9.53 16 19 N -0.50 -14.77 3.89 -701.98 -2.73 -17.50 16 20 C 0.07 1.72 5.16 86.33 0.45 2.17 16 21 C -0.10 -2.29 5.26 30.65 0.16 -2.13 16 22 C -0.10 -2.12 2.59 -11.46 -0.03 -2.15 16 23 C 0.52 13.11 7.43 87.66 0.65 13.76 16 24 N -0.84 -12.72 8.78 -173.54 -1.52 -14.25 16 25 O -0.59 -21.79 16.81 -3.05 -0.05 -21.84 16 26 C -0.10 -2.71 4.68 30.64 0.14 -2.56 16 27 C 0.08 2.17 4.93 86.32 0.43 2.60 16 28 H 0.27 15.69 8.29 -92.70 -0.77 14.92 16 29 H 0.39 17.15 8.44 -92.70 -0.78 16.37 16 30 H 0.04 1.65 8.00 -2.39 -0.02 1.63 16 31 H 0.04 1.80 7.03 -2.39 -0.02 1.79 16 32 H 0.15 3.15 8.05 -2.91 -0.02 3.13 16 33 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.07 1.86 7.42 -2.39 -0.02 1.85 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.61 7.67 -2.39 -0.02 1.59 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.13 1.90 8.14 -2.39 -0.02 1.89 16 40 H 0.42 3.21 8.32 -92.71 -0.77 2.43 16 41 H 0.41 5.66 8.93 -92.70 -0.83 4.83 16 42 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 44 H 0.07 1.56 7.80 -2.39 -0.02 1.54 16 45 H 0.06 1.82 8.11 -2.38 -0.02 1.80 16 Total: -1.00 -90.15 374.79 -2.15 -92.31 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -1.33 Total: 37.17 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 5.66 Total: 26.34 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -8.40 Total: -136.03 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -0.12 Total: -65.37 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -90.15 -2.15 -92.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362125328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.089 kcal (2) G-P(sol) polarization free energy of solvation -90.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds