Wall clock time and date at job start Sat Apr 11 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.36315 * 126.62978 * 194.44741 * 3 2 1 5 5 C 1.29777 * 108.66297 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.12077 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49992 * 351.27836 * 6 5 4 8 8 C 1.53000 * 117.50034 * 59.93609 * 6 5 4 9 9 O 1.34297 * 109.75589 * 0.26354 * 5 4 3 10 10 C 1.34563 * 108.30744 * 359.56615 * 9 5 4 11 11 N 1.37924 * 126.73652 * 180.19576 * 10 9 5 12 12 C 1.46952 * 111.00048 * 124.06693 * 11 10 9 13 13 C 1.53060 * 109.36494 * 176.81320 * 12 11 10 14 14 N 1.46961 * 109.36022 * 58.40064 * 13 12 11 15 15 C 1.46897 * 110.99240 * 176.81454 * 14 13 12 16 16 C 1.52998 * 109.47592 * 313.79710 * 15 14 13 17 17 H 1.09003 * 109.46992 * 60.00212 * 16 15 14 18 18 O 1.42904 * 109.47107 * 300.00784 * 16 15 14 19 19 C 1.50697 * 109.47424 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00042 * 0.02562 * 19 16 15 21 21 C 1.37879 * 120.00267 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00423 * 180.02562 * 21 19 16 23 23 Si 1.86803 * 119.99804 * 359.97438 * 21 19 16 24 24 H 1.48500 * 109.47350 * 89.99888 * 23 21 19 25 25 H 1.48501 * 109.47182 * 210.00507 * 23 21 19 26 26 H 1.48509 * 109.47003 * 329.99939 * 23 21 19 27 27 C 1.46952 * 110.88281 * 300.67875 * 14 13 12 28 28 C 1.46962 * 110.99825 * 0.26709 * 11 10 9 29 29 H 1.09002 * 115.54932 * 205.60673 * 6 5 4 30 30 H 1.09000 * 117.49996 * 215.00670 * 7 6 5 31 31 H 1.08999 * 117.49664 * 0.02562 * 7 6 5 32 32 H 1.09008 * 117.49673 * 359.97438 * 8 6 5 33 33 H 1.08999 * 117.49942 * 144.97208 * 8 6 5 34 34 H 1.09007 * 109.49014 * 296.77589 * 12 11 10 35 35 H 1.08998 * 109.49010 * 56.84615 * 12 11 10 36 36 H 1.09001 * 109.48738 * 298.43777 * 13 12 11 37 37 H 1.08993 * 109.48796 * 178.36670 * 13 12 11 38 38 H 1.09001 * 109.47334 * 73.80037 * 15 14 13 39 39 H 1.09003 * 109.46779 * 193.79791 * 15 14 13 40 40 H 0.96702 * 113.99418 * 299.99290 * 18 16 15 41 41 H 0.96999 * 120.00211 * 179.97438 * 22 21 19 42 42 H 1.09007 * 109.49014 * 299.36136 * 27 14 13 43 43 H 1.08998 * 109.49010 * 179.29109 * 27 14 13 44 44 H 1.08996 * 109.48785 * 303.15858 * 28 11 10 45 45 H 1.09001 * 109.48872 * 63.20156 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3808 1.0603 0.2729 5 6 4.6155 0.6731 0.1736 6 6 5.8200 1.5502 0.3990 7 6 5.5785 3.0511 0.5721 8 6 5.9760 2.1955 1.7775 9 8 4.6580 -0.6254 -0.1666 10 6 3.3945 -1.0751 -0.2766 11 7 3.0001 -2.3552 -0.6054 12 6 2.1185 -2.9164 0.4277 13 6 1.6406 -4.3026 -0.0112 14 7 2.8048 -5.1712 -0.2346 15 6 2.3848 -6.5346 -0.5848 16 6 1.2825 -6.9907 0.3732 17 1 0.4300 -6.3161 0.2936 18 8 1.7792 -6.9745 1.7130 19 6 0.8521 -8.3895 0.0143 20 1 1.3183 -8.9022 -0.8140 21 6 -0.1371 -9.0150 0.7433 22 7 -0.5124 -10.2359 0.4304 23 14 -0.9431 -8.1285 2.1765 24 1 -2.1250 -7.3726 1.6895 25 1 -1.3748 -9.1213 3.1930 26 1 0.0298 -7.1868 2.7864 27 6 3.6864 -4.6100 -1.2677 28 6 4.1643 -3.2239 -0.8289 29 1 6.7287 1.2430 -0.1186 30 1 6.3284 3.7313 0.1683 31 1 4.5484 3.4040 0.5233 32 1 5.2071 1.9859 2.5212 33 1 6.9873 2.3124 2.1670 34 1 2.6662 -3.0010 1.3665 35 1 1.2579 -2.2620 0.5661 36 1 1.0698 -4.2146 -0.9356 37 1 1.0098 -4.7329 0.7666 38 1 2.0059 -6.5468 -1.6068 39 1 3.2373 -7.2091 -0.5053 40 1 2.5402 -7.5535 1.8573 41 1 -1.2080 -10.6760 0.9436 42 1 3.1388 -4.5254 -2.2065 43 1 4.5471 -5.2644 -1.4061 44 1 4.7951 -2.7935 -1.6066 45 1 4.7354 -3.3116 0.0954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363781430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:36 Heat of formation + Delta-G solvation = 63.297923 kcal Electronic energy + Delta-G solvation = -28399.130846 eV Core-core repulsion = 24420.452056 eV Total energy + Delta-G solvation = -3978.678790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.76379 -39.77862 -37.81206 -37.04974 -36.71892 -34.92863 -34.77805 -32.29328 -31.29624 -30.42281 -28.79677 -26.76781 -25.37176 -24.12451 -23.84823 -22.90864 -22.76808 -21.21451 -20.54671 -19.80790 -19.40974 -17.93253 -17.31335 -17.27896 -16.33514 -15.74540 -15.30271 -15.16980 -15.04514 -14.94105 -14.76029 -14.54093 -14.08830 -13.90387 -13.75590 -13.51182 -13.33440 -13.00637 -12.76226 -12.57294 -12.37745 -12.07139 -11.86956 -11.70741 -11.57488 -11.43600 -11.33458 -11.16431 -11.11818 -11.05766 -10.96103 -10.86282 -10.41263 -10.32337 -9.94148 -9.06250 -8.67954 -8.33769 -8.30234 -8.07851 -6.18520 -4.30520 0.66873 1.59517 1.75050 2.33913 3.02018 3.19189 3.29481 3.34875 3.44980 3.45273 3.69654 4.00390 4.07955 4.23515 4.35556 4.43894 4.47994 4.50375 4.68563 4.81802 4.87823 5.09233 5.11688 5.15975 5.17925 5.22681 5.26209 5.32040 5.48149 5.51048 5.64618 5.70254 5.71618 5.75339 5.80644 5.91323 6.00674 6.10189 6.24712 6.31788 6.52049 7.09542 7.18715 7.20337 7.29841 7.31747 7.56747 8.22835 8.76861 8.99734 9.45590 10.91975 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002645 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.715425 B =10585.334014 C =11117.123203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.303 3.697 3 C 0.004 3.996 4 N -0.430 5.430 5 C 0.226 3.774 6 C -0.079 4.079 7 C -0.147 4.147 8 C -0.155 4.155 9 O -0.206 6.206 10 C 0.239 3.761 11 N -0.429 5.429 12 C 0.057 3.943 13 C 0.053 3.947 14 N -0.533 5.533 15 C 0.041 3.959 16 C 0.194 3.806 17 H 0.055 0.945 18 O -0.573 6.573 19 C -0.567 4.567 20 H 0.072 0.928 21 C 0.084 3.916 22 N -0.891 5.891 23 Si 0.869 3.131 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.216 1.216 27 C 0.052 3.948 28 C 0.050 3.950 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.357 0.643 41 H 0.265 0.735 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.752 23.116 -0.516 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.013 4.013 3 C -0.120 4.120 4 N -0.158 5.158 5 C 0.016 3.984 6 C -0.098 4.098 7 C -0.184 4.184 8 C -0.193 4.193 9 O -0.091 6.091 10 C 0.081 3.919 11 N -0.151 5.151 12 C -0.067 4.067 13 C -0.076 4.076 14 N -0.258 5.258 15 C -0.086 4.086 16 C 0.136 3.864 17 H 0.073 0.927 18 O -0.379 6.379 19 C -0.605 4.605 20 H 0.090 0.910 21 C -0.120 4.120 22 N -0.528 5.528 23 Si 0.695 3.305 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.138 1.138 27 C -0.076 4.076 28 C -0.076 4.076 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.127 0.873 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.204 0.796 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.266 23.943 -0.246 27.872 hybrid contribution 0.439 -1.011 -0.135 1.111 sum 14.706 22.932 -0.381 27.245 Atomic orbital electron populations 1.81325 1.10644 1.06219 1.09269 1.23441 0.89949 0.94250 0.93657 1.16205 0.87300 0.89631 1.18851 1.70579 0.99772 1.27832 1.17604 1.24588 0.93773 0.79630 1.00425 1.20084 0.92766 0.92926 1.04013 1.23145 1.04510 0.90064 1.00715 1.23186 1.03912 1.01768 0.90408 1.84426 1.28951 1.27503 1.68230 1.21766 0.81001 0.93084 0.96037 1.59558 1.18046 0.97609 1.39845 1.22717 0.95663 0.96740 0.91602 1.22305 0.93351 0.89774 1.02143 1.62276 1.17337 1.03164 1.42999 1.22850 1.00173 0.86693 0.98901 1.19834 0.90648 0.96322 0.79590 0.92737 1.86642 1.50733 1.69471 1.31043 1.21456 1.22101 0.98950 1.17954 0.90998 1.24984 0.95474 0.94459 0.97110 1.69948 1.29606 1.12934 1.40308 0.87059 0.79703 0.80998 0.82735 1.21415 1.22153 1.13803 1.22198 0.98314 0.93236 0.93891 1.22457 0.89838 0.92698 1.02642 0.84589 0.87351 0.86991 0.87836 0.87275 0.91135 0.89520 0.93721 0.87307 0.94501 0.90636 0.79617 0.92505 0.93763 0.89252 0.89037 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.20 18.54 41.84 0.78 -5.42 16 2 C 0.30 4.28 13.70 -22.47 -0.31 3.97 16 3 C 0.00 0.05 6.85 -83.87 -0.57 -0.53 16 4 N -0.43 -5.06 10.85 -8.19 -0.09 -5.14 16 5 C 0.23 2.19 7.84 -13.15 -0.10 2.09 16 6 C -0.08 -0.47 6.33 -91.77 -0.58 -1.05 16 7 C -0.15 -0.72 10.13 -26.69 -0.27 -0.99 16 8 C -0.15 -0.74 10.24 -26.70 -0.27 -1.02 16 9 O -0.21 -2.15 9.98 5.01 0.05 -2.10 16 10 C 0.24 2.83 6.62 -14.73 -0.10 2.73 16 11 N -0.43 -5.19 4.74 -172.98 -0.82 -6.01 16 12 C 0.06 0.74 5.39 -3.76 -0.02 0.72 16 13 C 0.05 0.80 4.93 -3.76 -0.02 0.78 16 14 N -0.53 -8.07 4.73 -234.46 -1.11 -9.18 16 15 C 0.04 0.73 4.88 -3.83 -0.02 0.71 16 16 C 0.19 4.22 1.61 -27.89 -0.04 4.17 16 17 H 0.06 1.23 5.69 -51.93 -0.30 0.94 16 18 O -0.57 -12.19 9.81 -35.23 -0.35 -12.54 16 19 C -0.57 -15.11 9.34 -34.44 -0.32 -15.43 16 20 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 21 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 22 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 23 Si 0.87 21.33 26.99 -169.99 -4.59 16.75 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.22 -5.11 5.31 56.52 0.30 -4.81 16 27 C 0.05 0.63 5.58 -3.77 -0.02 0.61 16 28 C 0.05 0.52 5.05 -3.76 -0.02 0.51 16 29 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.11 0.72 7.85 -51.93 -0.41 0.31 16 32 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.16 5.85 -51.93 -0.30 0.85 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.87 5.84 -51.93 -0.30 1.57 16 38 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.36 6.85 9.04 45.56 0.41 7.26 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.81 8.06 -51.93 -0.42 0.40 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -31.63 371.17 -8.15 -39.78 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.62 Total: 4.67 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.77 Total: -0.44 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.47 Total: -51.71 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.30 Total: -14.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.59 Total: 16.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.63 -8.15 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363781430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.075 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds