Wall clock time and date at job start Sat Apr 11 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.36315 * 126.62978 * 194.44741 * 3 2 1 5 5 C 1.29777 * 108.66297 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.12077 * 179.97438 * 5 4 3 7 7 C 1.53002 * 117.49992 * 351.27836 * 6 5 4 8 8 C 1.53000 * 117.50034 * 59.93609 * 6 5 4 9 9 O 1.34297 * 109.75589 * 0.26354 * 5 4 3 10 10 C 1.34563 * 108.30744 * 359.56615 * 9 5 4 11 11 N 1.37924 * 126.73652 * 180.19576 * 10 9 5 12 12 C 1.46952 * 111.00048 * 124.06693 * 11 10 9 13 13 C 1.53060 * 109.36494 * 176.81320 * 12 11 10 14 14 N 1.46961 * 109.36022 * 58.40064 * 13 12 11 15 15 C 1.46897 * 110.99240 * 176.81454 * 14 13 12 16 16 C 1.52998 * 109.47592 * 313.79710 * 15 14 13 17 17 H 1.09003 * 109.46992 * 60.00212 * 16 15 14 18 18 O 1.42904 * 109.47107 * 300.00784 * 16 15 14 19 19 C 1.50697 * 109.47424 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00042 * 0.02562 * 19 16 15 21 21 C 1.37879 * 120.00267 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00423 * 180.02562 * 21 19 16 23 23 Si 1.86803 * 119.99804 * 359.97438 * 21 19 16 24 24 H 1.48500 * 109.47350 * 89.99888 * 23 21 19 25 25 H 1.48501 * 109.47182 * 210.00507 * 23 21 19 26 26 H 1.48509 * 109.47003 * 329.99939 * 23 21 19 27 27 C 1.46952 * 110.88281 * 300.67875 * 14 13 12 28 28 C 1.46962 * 110.99825 * 0.26709 * 11 10 9 29 29 H 1.09002 * 115.54932 * 205.60673 * 6 5 4 30 30 H 1.09000 * 117.49996 * 215.00670 * 7 6 5 31 31 H 1.08999 * 117.49664 * 0.02562 * 7 6 5 32 32 H 1.09008 * 117.49673 * 359.97438 * 8 6 5 33 33 H 1.08999 * 117.49942 * 144.97208 * 8 6 5 34 34 H 1.09007 * 109.49014 * 296.77589 * 12 11 10 35 35 H 1.08998 * 109.49010 * 56.84615 * 12 11 10 36 36 H 1.09001 * 109.48738 * 298.43777 * 13 12 11 37 37 H 1.08993 * 109.48796 * 178.36670 * 13 12 11 38 38 H 1.09001 * 109.47334 * 73.80037 * 15 14 13 39 39 H 1.09003 * 109.46779 * 193.79791 * 15 14 13 40 40 H 0.96702 * 113.99418 * 299.99290 * 18 16 15 41 41 H 0.96999 * 120.00211 * 179.97438 * 22 21 19 42 42 H 1.09007 * 109.49014 * 299.36136 * 27 14 13 43 43 H 1.08998 * 109.49010 * 179.29109 * 27 14 13 44 44 H 1.08996 * 109.48785 * 303.15858 * 28 11 10 45 45 H 1.09001 * 109.48872 * 63.20156 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3808 1.0603 0.2729 5 6 4.6155 0.6731 0.1736 6 6 5.8200 1.5502 0.3990 7 6 5.5785 3.0511 0.5721 8 6 5.9760 2.1955 1.7775 9 8 4.6580 -0.6254 -0.1666 10 6 3.3945 -1.0751 -0.2766 11 7 3.0001 -2.3552 -0.6054 12 6 2.1185 -2.9164 0.4277 13 6 1.6406 -4.3026 -0.0112 14 7 2.8048 -5.1712 -0.2346 15 6 2.3848 -6.5346 -0.5848 16 6 1.2825 -6.9907 0.3732 17 1 0.4300 -6.3161 0.2936 18 8 1.7792 -6.9745 1.7130 19 6 0.8521 -8.3895 0.0143 20 1 1.3183 -8.9022 -0.8140 21 6 -0.1371 -9.0150 0.7433 22 7 -0.5124 -10.2359 0.4304 23 14 -0.9431 -8.1285 2.1765 24 1 -2.1250 -7.3726 1.6895 25 1 -1.3748 -9.1213 3.1930 26 1 0.0298 -7.1868 2.7864 27 6 3.6864 -4.6100 -1.2677 28 6 4.1643 -3.2239 -0.8289 29 1 6.7287 1.2430 -0.1186 30 1 6.3284 3.7313 0.1683 31 1 4.5484 3.4040 0.5233 32 1 5.2071 1.9859 2.5212 33 1 6.9873 2.3124 2.1670 34 1 2.6662 -3.0010 1.3665 35 1 1.2579 -2.2620 0.5661 36 1 1.0698 -4.2146 -0.9356 37 1 1.0098 -4.7329 0.7666 38 1 2.0059 -6.5468 -1.6068 39 1 3.2373 -7.2091 -0.5053 40 1 2.5402 -7.5535 1.8573 41 1 -1.2080 -10.6760 0.9436 42 1 3.1388 -4.5254 -2.2065 43 1 4.5471 -5.2644 -1.4061 44 1 4.7951 -2.7935 -1.6066 45 1 4.7354 -3.3116 0.0954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363781430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:36 Heat of formation + Delta-G solvation = 36.626451 kcal Electronic energy + Delta-G solvation = -28400.287408 eV Core-core repulsion = 24420.452056 eV Total energy + Delta-G solvation = -3979.835351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.60976 -40.84736 -38.62095 -38.08659 -37.91782 -36.14714 -35.80814 -34.41157 -32.32496 -31.58885 -30.17759 -28.16658 -26.21486 -25.61710 -24.83918 -23.82733 -23.21798 -22.27266 -21.65994 -21.02274 -20.24479 -19.50137 -18.61842 -18.16668 -17.01102 -16.85925 -16.74879 -16.54726 -16.33998 -16.05531 -15.74236 -15.52848 -15.46743 -15.22186 -14.94658 -14.84849 -14.57155 -14.38968 -13.97170 -13.64673 -13.32763 -13.20406 -13.02087 -12.79182 -12.69612 -12.65918 -12.46982 -12.44086 -12.36024 -12.19720 -11.81650 -11.78528 -11.70617 -11.45351 -11.14222 -10.98424 -10.82130 -10.11666 -9.33995 -9.20159 -8.36585 -6.50626 -0.25567 0.78467 0.89828 1.27725 1.37795 1.44392 1.72750 2.14255 2.22448 2.39899 2.41459 2.81154 2.93864 3.02236 3.29041 3.46494 3.65165 3.76433 3.79810 3.91709 4.00859 4.02755 4.05708 4.13348 4.20774 4.27867 4.34864 4.44811 4.48588 4.56073 4.71937 4.77686 4.81130 4.87397 4.88301 5.01380 5.01756 5.19115 5.25516 5.33529 5.37830 5.43573 5.48380 5.94995 6.05615 6.11088 6.20844 6.36823 6.62330 7.21717 7.36590 8.77432 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002645 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.715425 B =10585.334014 C =11117.123203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.316 3.684 3 C -0.013 4.013 4 N -0.455 5.455 5 C 0.242 3.758 6 C -0.091 4.091 7 C -0.143 4.143 8 C -0.147 4.147 9 O -0.200 6.200 10 C 0.244 3.756 11 N -0.436 5.436 12 C 0.068 3.932 13 C 0.054 3.946 14 N -0.531 5.531 15 C 0.055 3.945 16 C 0.202 3.798 17 H 0.050 0.950 18 O -0.573 6.573 19 C -0.564 4.564 20 H 0.039 0.961 21 C 0.029 3.971 22 N -0.939 5.939 23 Si 0.932 3.068 24 H -0.290 1.290 25 H -0.299 1.299 26 H -0.200 1.200 27 C 0.052 3.948 28 C 0.055 3.945 29 H 0.164 0.836 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.088 0.912 38 H 0.029 0.971 39 H 0.081 0.919 40 H 0.369 0.631 41 H 0.266 0.734 42 H 0.041 0.959 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.668 25.437 0.029 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C 0.001 3.999 3 C -0.136 4.136 4 N -0.182 5.182 5 C 0.031 3.969 6 C -0.110 4.110 7 C -0.180 4.180 8 C -0.185 4.185 9 O -0.085 6.085 10 C 0.085 3.915 11 N -0.158 5.158 12 C -0.056 4.056 13 C -0.074 4.074 14 N -0.256 5.256 15 C -0.073 4.073 16 C 0.144 3.856 17 H 0.067 0.933 18 O -0.380 6.380 19 C -0.602 4.602 20 H 0.057 0.943 21 C -0.171 4.171 22 N -0.578 5.578 23 Si 0.757 3.243 24 H -0.217 1.217 25 H -0.226 1.226 26 H -0.121 1.121 27 C -0.076 4.076 28 C -0.071 4.071 29 H 0.182 0.818 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.153 0.847 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.217 0.783 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.199 26.286 0.295 31.414 hybrid contribution -0.338 -1.686 -0.355 1.756 sum 16.862 24.600 -0.061 29.824 Atomic orbital electron populations 1.81319 1.11646 1.07403 1.10728 1.23691 0.90334 0.93220 0.92671 1.16238 0.86749 0.90586 1.20021 1.70610 1.00570 1.27834 1.19228 1.25484 0.94286 0.79397 0.97723 1.20507 0.92175 0.92865 1.05470 1.23220 1.04275 0.89747 1.00806 1.23273 1.04892 1.00713 0.89579 1.84454 1.27956 1.27889 1.68212 1.21541 0.81379 0.92605 0.95960 1.59503 1.18767 0.98004 1.39478 1.22494 0.95869 0.95287 0.91968 1.22193 0.93281 0.90874 1.01066 1.62244 1.17246 1.01873 1.44261 1.22512 0.98936 0.88660 0.97195 1.19608 0.92037 0.93279 0.80711 0.93274 1.86574 1.51418 1.69659 1.30352 1.21831 1.21093 1.00946 1.16330 0.94263 1.25817 0.96410 0.95018 0.99819 1.70074 1.30944 1.14739 1.42061 0.86093 0.78788 0.79813 0.79629 1.21677 1.22578 1.12124 1.22314 0.98123 0.94445 0.92736 1.22515 0.89366 0.91454 1.03720 0.81844 0.84764 0.88926 0.89362 0.84661 0.90711 0.90117 0.94572 0.89376 0.95307 0.90101 0.78314 0.92522 0.94120 0.87347 0.86639 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.72 18.54 19.00 0.35 -13.37 16 2 C 0.32 8.95 13.70 88.33 1.21 10.16 16 3 C -0.01 -0.33 6.85 39.74 0.27 -0.06 16 4 N -0.45 -10.16 10.85 -294.68 -3.20 -13.36 16 5 C 0.24 4.13 7.84 88.41 0.69 4.82 16 6 C -0.09 -0.79 6.33 -11.54 -0.07 -0.87 16 7 C -0.14 -1.01 10.13 30.62 0.31 -0.70 16 8 C -0.15 -0.96 10.24 30.62 0.31 -0.65 16 9 O -0.20 -3.63 9.98 -4.98 -0.05 -3.68 16 10 C 0.24 5.31 6.62 83.79 0.55 5.87 16 11 N -0.44 -9.72 4.74 -811.59 -3.85 -13.56 16 12 C 0.07 1.71 5.39 86.31 0.47 2.18 16 13 C 0.05 1.61 4.93 86.31 0.43 2.04 16 14 N -0.53 -15.20 4.73 -895.71 -4.23 -19.43 16 15 C 0.05 1.91 4.88 86.30 0.42 2.33 16 16 C 0.20 8.67 1.61 29.85 0.05 8.72 16 17 H 0.05 2.20 5.69 -2.39 -0.01 2.19 16 18 O -0.57 -23.43 9.81 -148.98 -1.46 -24.89 16 19 C -0.56 -30.46 9.34 25.60 0.24 -30.22 16 20 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 21 C 0.03 1.66 5.47 84.66 0.46 2.12 16 22 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 23 Si 0.93 44.52 26.99 68.60 1.85 46.37 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.20 -8.94 5.31 99.48 0.53 -8.41 16 27 C 0.05 1.12 5.58 86.31 0.48 1.60 16 28 C 0.05 0.99 5.05 86.31 0.44 1.43 16 29 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.09 1.06 7.85 -2.39 -0.02 1.04 16 32 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 2.13 5.85 -2.39 -0.01 2.12 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 2.99 5.84 -2.39 -0.01 2.97 16 38 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.37 13.43 9.04 -74.06 -0.67 12.76 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.12 1.60 8.06 -2.39 -0.02 1.58 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.69 371.17 -3.84 -73.53 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.19 Total: 17.02 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.26 Total: 8.76 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -10.63 Total: -117.12 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.51 Total: -28.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.85 Total: 46.37 kcal Total: -69.69 -3.84 -73.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363781430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.155 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds