Wall clock time and date at job start Sat Apr 11 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00310 * 2 1 4 4 H 1.48504 * 109.46649 * 269.99800 * 3 2 1 5 5 H 1.48500 * 109.47189 * 29.99711 * 3 2 1 6 6 H 1.48496 * 109.47243 * 150.00064 * 3 2 1 7 7 C 1.37880 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99954 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46876 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99748 * 169.99802 * 10 9 7 12 12 C 1.53242 * 109.33896 * 187.25472 * 11 10 9 13 13 N 1.47078 * 108.52152 * 306.17519 * 12 11 10 14 14 C 1.34781 * 120.87798 * 230.91018 * 13 12 11 15 15 O 1.21590 * 120.00113 * 174.74682 * 14 13 12 16 16 N 1.34780 * 119.99866 * 354.75233 * 14 13 12 17 17 C 1.39975 * 119.99641 * 184.51518 * 16 14 13 18 18 C 1.38980 * 119.99893 * 144.28965 * 17 16 14 19 19 C 1.38214 * 120.22533 * 179.97438 * 18 17 16 20 20 C 1.38026 * 120.22180 * 359.97438 * 19 18 17 21 21 C 1.39570 * 119.99433 * 0.02562 * 20 19 18 22 22 C 1.47862 * 120.11429 * 180.02562 * 21 20 19 23 23 N 1.34781 * 119.99694 * 0.02562 * 22 21 20 24 24 O 1.21549 * 120.00244 * 180.02562 * 22 21 20 25 25 C 1.38597 * 120.00069 * 324.00665 * 17 16 14 26 26 C 1.47071 * 118.23858 * 51.18315 * 13 12 11 27 27 C 1.46893 * 111.00232 * 294.30249 * 10 9 7 28 28 H 0.97001 * 119.99474 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47162 * 60.00128 * 9 7 2 30 30 H 1.08993 * 109.47520 * 299.99543 * 9 7 2 31 31 H 1.08998 * 109.48827 * 67.29946 * 11 10 9 32 32 H 1.09001 * 109.49656 * 307.21592 * 11 10 9 33 33 H 1.09001 * 109.62686 * 186.46092 * 12 11 10 34 34 H 1.09003 * 109.62483 * 65.88682 * 12 11 10 35 35 H 0.96997 * 119.99956 * 4.51278 * 16 14 13 36 36 H 1.07994 * 119.88872 * 359.97166 * 18 17 16 37 37 H 1.07995 * 119.89489 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.00064 * 180.02562 * 20 19 18 39 39 H 0.96996 * 119.99911 * 359.97438 * 23 22 21 40 40 H 0.96999 * 119.99607 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.10460 * 0.02562 * 25 17 16 42 42 H 1.09001 * 109.63040 * 68.52479 * 26 13 12 43 43 H 1.09005 * 109.62781 * 189.10306 * 26 13 12 44 44 H 1.08994 * 109.49422 * 292.70172 * 27 10 9 45 45 H 1.09001 * 109.49487 * 52.79099 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5636 -6.0032 0.4116 13 7 3.4615 -5.9863 -0.7532 14 6 3.7161 -7.1135 -1.4468 15 8 4.3833 -7.0651 -2.4621 16 7 3.2311 -8.2946 -1.0149 17 6 3.5732 -9.4772 -1.6808 18 6 3.7569 -10.6518 -0.9610 19 6 4.0942 -11.8224 -1.6139 20 6 4.2504 -11.8329 -2.9853 21 6 4.0682 -10.6585 -3.7172 22 6 4.2343 -10.6668 -5.1865 23 7 4.5618 -11.8099 -5.8211 24 8 4.0756 -9.6429 -5.8219 25 6 3.7230 -9.4782 -3.0587 26 6 4.0789 -4.7079 -1.1374 27 6 2.9767 -3.6491 -1.2493 28 1 -0.4849 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 0.8795 -5.1263 -0.6112 32 1 0.9158 -4.8191 1.1422 33 1 2.0630 -6.9695 0.4740 34 1 3.1392 -5.8265 1.3202 35 1 2.6451 -8.3249 -0.2425 36 1 3.6357 -10.6499 0.1121 37 1 4.2353 -12.7322 -1.0494 38 1 4.5137 -12.7496 -3.4918 39 1 4.6888 -12.6269 -5.3140 40 1 4.6704 -11.8154 -6.7850 41 1 3.5766 -8.5673 -3.6201 42 1 4.8001 -4.4066 -0.3776 43 1 4.5802 -4.8177 -2.0991 44 1 2.3149 -3.8994 -2.0784 45 1 3.4272 -2.6723 -1.4250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364191099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:39 Heat of formation + Delta-G solvation = -13.998875 kcal Electronic energy + Delta-G solvation = -27888.360214 eV Core-core repulsion = 23906.329584 eV Total energy + Delta-G solvation = -3982.030630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01486 -39.98556 -38.58894 -37.52725 -35.03816 -34.51888 -33.89478 -32.42556 -31.31435 -30.90787 -29.75135 -28.02698 -25.56275 -24.51195 -23.67615 -22.88607 -22.04859 -21.07618 -20.63278 -19.43781 -18.79645 -17.88560 -17.29594 -16.53126 -16.36324 -16.24874 -15.70827 -15.41507 -14.94236 -14.74624 -14.63552 -14.51599 -14.15418 -14.04834 -13.98723 -13.72775 -13.57539 -13.22892 -12.73500 -12.39644 -12.18578 -12.03292 -11.83352 -11.32051 -11.21343 -10.85990 -10.78221 -10.64830 -10.64291 -10.51851 -10.27762 -10.01201 -10.00067 -9.88425 -9.29649 -9.23731 -8.69176 -8.48340 -8.27426 -7.36685 -6.07242 -4.09112 0.54805 1.07422 2.44126 2.59286 3.09826 3.20164 3.30374 3.36751 3.40595 3.64124 3.70677 4.37967 4.45889 4.51449 4.67877 4.74231 4.88094 5.07557 5.13904 5.20015 5.25952 5.30336 5.36127 5.53469 5.61520 5.76053 5.86444 5.92983 5.96874 6.00608 6.09175 6.13253 6.16705 6.35524 6.48090 6.52071 6.61110 6.73762 6.87107 7.02456 7.18792 7.26135 7.71644 7.76837 7.97992 7.99413 8.09238 8.44979 8.45417 8.98028 9.55599 11.03581 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.002235 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.809288 B =12525.047492 C =13215.727045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.116 3.884 13 N -0.618 5.618 14 C 0.704 3.296 15 O -0.572 6.572 16 N -0.690 5.690 17 C 0.165 3.835 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.109 4.109 21 C -0.123 4.123 22 C 0.562 3.438 23 N -0.853 5.853 24 O -0.530 6.530 25 C -0.060 4.060 26 C 0.131 3.869 27 C 0.050 3.950 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.408 0.592 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.400 0.600 40 H 0.404 0.596 41 H 0.156 0.844 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.026 0.974 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -28.194 -1.631 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.008 4.008 13 N -0.355 5.355 14 C 0.406 3.594 15 O -0.449 6.449 16 N -0.340 5.340 17 C 0.069 3.931 18 C -0.144 4.144 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.127 4.127 22 C 0.348 3.652 23 N -0.418 5.418 24 O -0.406 6.406 25 C -0.081 4.081 26 C 0.009 3.991 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.229 0.771 40 H 0.235 0.765 41 H 0.173 0.827 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.520 -27.072 -2.195 28.183 hybrid contribution -0.515 0.342 -0.239 0.663 sum 7.006 -26.730 -2.433 27.740 Atomic orbital electron populations 1.69957 1.06096 1.26877 1.50797 1.24996 0.94879 0.99397 0.95324 0.86486 0.79788 0.82990 0.78103 1.20683 1.21267 1.19724 1.21132 0.93508 0.89829 1.50355 0.91751 1.19728 0.89982 0.87178 0.96203 1.62097 1.27893 1.02413 1.33595 1.22380 0.94647 0.90911 1.01028 1.21836 0.91906 0.98337 0.88681 1.47445 1.49136 1.07621 1.31269 1.15843 0.80130 0.80188 0.83203 1.90950 1.44446 1.84920 1.24608 1.42819 1.52440 1.04225 1.34545 1.17429 0.99225 0.85457 0.90945 1.21109 1.01221 0.92101 1.00012 1.20823 1.00011 0.97757 0.94049 1.21187 1.00382 0.96800 0.94502 1.19731 1.05554 0.94547 0.92824 1.18290 0.75980 0.83334 0.87600 1.43733 1.74377 1.11684 1.11990 1.90869 1.49680 1.32285 1.67748 1.21511 0.95268 0.98605 0.92707 1.21830 0.95582 0.80155 1.01531 1.22375 0.95245 0.99217 0.91098 0.92868 0.99074 0.95027 0.95412 0.89920 0.91328 0.90263 0.75393 0.85159 0.84979 0.85701 0.77096 0.76472 0.82664 0.90856 0.89041 0.95556 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.90 8.41 -34.44 -0.29 -14.19 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 10 N -0.53 -10.87 4.62 -235.76 -1.09 -11.96 16 11 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 12 C 0.12 1.45 6.53 -3.60 -0.02 1.43 16 13 N -0.62 -9.19 3.01 -178.19 -0.54 -9.73 16 14 C 0.70 10.82 8.15 -86.91 -0.71 10.11 16 15 O -0.57 -10.84 13.29 5.29 0.07 -10.77 16 16 N -0.69 -7.99 5.25 -14.25 -0.07 -8.07 16 17 C 0.17 1.89 6.28 -83.73 -0.53 1.37 16 18 C -0.12 -0.99 9.96 -39.32 -0.39 -1.39 16 19 C -0.11 -0.71 10.02 -39.67 -0.40 -1.11 16 20 C -0.11 -0.79 9.54 -39.16 -0.37 -1.16 16 21 C -0.12 -1.36 5.87 -104.99 -0.62 -1.98 16 22 C 0.56 6.64 8.05 -12.32 -0.10 6.54 16 23 N -0.85 -5.52 8.82 30.53 0.27 -5.25 16 24 O -0.53 -8.89 17.18 5.32 0.09 -8.80 16 25 C -0.06 -0.82 8.23 -38.98 -0.32 -1.14 16 26 C 0.13 2.14 6.61 -3.60 -0.02 2.12 16 27 C 0.05 0.95 5.46 -3.70 -0.02 0.93 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 33 H 0.07 0.62 5.75 -51.93 -0.30 0.32 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 3.46 6.36 -40.82 -0.26 3.20 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.45 6.40 -52.49 -0.34 0.11 16 39 H 0.40 1.23 6.86 -40.82 -0.28 0.95 16 40 H 0.40 2.14 8.93 -40.82 -0.36 1.78 16 41 H 0.16 2.70 5.88 -52.49 -0.31 2.39 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.53 7.04 -51.93 -0.37 1.16 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -36.30 367.31 -9.81 -46.11 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.86 Total: 3.70 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -3.93 Total: 8.47 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.69 Total: -60.58 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.16 Total: -19.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.30 -9.81 -46.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364191099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.107 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds