Wall clock time and date at job start Sat Apr 11 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00310 * 2 1 4 4 H 1.48504 * 109.46649 * 269.99800 * 3 2 1 5 5 H 1.48500 * 109.47189 * 29.99711 * 3 2 1 6 6 H 1.48496 * 109.47243 * 150.00064 * 3 2 1 7 7 C 1.37880 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99954 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46876 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99748 * 169.99802 * 10 9 7 12 12 C 1.53242 * 109.33896 * 187.25472 * 11 10 9 13 13 N 1.47078 * 108.52152 * 306.17519 * 12 11 10 14 14 C 1.34781 * 120.87798 * 230.91018 * 13 12 11 15 15 O 1.21590 * 120.00113 * 174.74682 * 14 13 12 16 16 N 1.34780 * 119.99866 * 354.75233 * 14 13 12 17 17 C 1.39975 * 119.99641 * 184.51518 * 16 14 13 18 18 C 1.38980 * 119.99893 * 144.28965 * 17 16 14 19 19 C 1.38214 * 120.22533 * 179.97438 * 18 17 16 20 20 C 1.38026 * 120.22180 * 359.97438 * 19 18 17 21 21 C 1.39570 * 119.99433 * 0.02562 * 20 19 18 22 22 C 1.47862 * 120.11429 * 180.02562 * 21 20 19 23 23 N 1.34781 * 119.99694 * 0.02562 * 22 21 20 24 24 O 1.21549 * 120.00244 * 180.02562 * 22 21 20 25 25 C 1.38597 * 120.00069 * 324.00665 * 17 16 14 26 26 C 1.47071 * 118.23858 * 51.18315 * 13 12 11 27 27 C 1.46893 * 111.00232 * 294.30249 * 10 9 7 28 28 H 0.97001 * 119.99474 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47162 * 60.00128 * 9 7 2 30 30 H 1.08993 * 109.47520 * 299.99543 * 9 7 2 31 31 H 1.08998 * 109.48827 * 67.29946 * 11 10 9 32 32 H 1.09001 * 109.49656 * 307.21592 * 11 10 9 33 33 H 1.09001 * 109.62686 * 186.46092 * 12 11 10 34 34 H 1.09003 * 109.62483 * 65.88682 * 12 11 10 35 35 H 0.96997 * 119.99956 * 4.51278 * 16 14 13 36 36 H 1.07994 * 119.88872 * 359.97166 * 18 17 16 37 37 H 1.07995 * 119.89489 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.00064 * 180.02562 * 20 19 18 39 39 H 0.96996 * 119.99911 * 359.97438 * 23 22 21 40 40 H 0.96999 * 119.99607 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.10460 * 0.02562 * 25 17 16 42 42 H 1.09001 * 109.63040 * 68.52479 * 26 13 12 43 43 H 1.09005 * 109.62781 * 189.10306 * 26 13 12 44 44 H 1.08994 * 109.49422 * 292.70172 * 27 10 9 45 45 H 1.09001 * 109.49487 * 52.79099 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5636 -6.0032 0.4116 13 7 3.4615 -5.9863 -0.7532 14 6 3.7161 -7.1135 -1.4468 15 8 4.3833 -7.0651 -2.4621 16 7 3.2311 -8.2946 -1.0149 17 6 3.5732 -9.4772 -1.6808 18 6 3.7569 -10.6518 -0.9610 19 6 4.0942 -11.8224 -1.6139 20 6 4.2504 -11.8329 -2.9853 21 6 4.0682 -10.6585 -3.7172 22 6 4.2343 -10.6668 -5.1865 23 7 4.5618 -11.8099 -5.8211 24 8 4.0756 -9.6429 -5.8219 25 6 3.7230 -9.4782 -3.0587 26 6 4.0789 -4.7079 -1.1374 27 6 2.9767 -3.6491 -1.2493 28 1 -0.4849 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 0.8795 -5.1263 -0.6112 32 1 0.9158 -4.8191 1.1422 33 1 2.0630 -6.9695 0.4740 34 1 3.1392 -5.8265 1.3202 35 1 2.6451 -8.3249 -0.2425 36 1 3.6357 -10.6499 0.1121 37 1 4.2353 -12.7322 -1.0494 38 1 4.5137 -12.7496 -3.4918 39 1 4.6888 -12.6269 -5.3140 40 1 4.6704 -11.8154 -6.7850 41 1 3.5766 -8.5673 -3.6201 42 1 4.8001 -4.4066 -0.3776 43 1 4.5802 -4.8177 -2.0991 44 1 2.3149 -3.8994 -2.0784 45 1 3.4272 -2.6723 -1.4250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364191099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:38 Heat of formation + Delta-G solvation = -43.799905 kcal Electronic energy + Delta-G solvation = -27889.652484 eV Core-core repulsion = 23906.329584 eV Total energy + Delta-G solvation = -3983.322900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04289 -40.93929 -39.66906 -38.75576 -36.15339 -35.94717 -34.76831 -34.36644 -32.22862 -32.00243 -30.80460 -29.60405 -27.25092 -25.29086 -24.94496 -24.17601 -23.50951 -22.20170 -21.66852 -20.62802 -19.70434 -18.94014 -18.50488 -18.09896 -17.36191 -17.05449 -16.92013 -16.68288 -16.35322 -16.01886 -15.88070 -15.62871 -15.50149 -15.30197 -15.11985 -14.93640 -14.67877 -14.41505 -14.09778 -13.64628 -13.59838 -13.12654 -12.83517 -12.77605 -12.68574 -12.60668 -12.37179 -12.34284 -12.19949 -11.77607 -11.58853 -11.34455 -11.23285 -11.10495 -10.77798 -10.63381 -9.95000 -9.91247 -9.21078 -9.05677 -8.22069 -6.31755 -0.18022 0.33452 1.39173 1.41858 1.42309 1.54046 1.73777 2.00218 2.39559 2.46073 2.72172 2.89077 3.10014 3.19095 3.83084 3.87007 3.95686 4.00453 4.08291 4.13956 4.21373 4.22936 4.38443 4.43608 4.48552 4.58821 4.67180 4.80269 4.90847 4.91595 4.98546 5.11952 5.17664 5.24386 5.29833 5.33763 5.41205 5.46260 5.62319 5.79608 5.83047 5.96644 6.01438 6.20966 6.41324 6.54961 6.73076 6.83647 7.27466 7.32978 7.37977 8.89091 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.002235 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.809288 B =12525.047492 C =13215.727045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.035 3.965 12 C 0.124 3.876 13 N -0.622 5.622 14 C 0.701 3.299 15 O -0.615 6.615 16 N -0.673 5.673 17 C 0.139 3.861 18 C -0.107 4.107 19 C -0.097 4.097 20 C -0.090 4.090 21 C -0.143 4.143 22 C 0.554 3.446 23 N -0.823 5.823 24 O -0.597 6.597 25 C -0.096 4.096 26 C 0.144 3.856 27 C 0.056 3.944 28 H 0.264 0.736 29 H -0.044 1.044 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.423 0.577 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.169 0.831 39 H 0.420 0.580 40 H 0.412 0.588 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.005 0.995 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -32.055 0.661 33.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.094 4.094 12 C 0.002 3.998 13 N -0.358 5.358 14 C 0.403 3.597 15 O -0.495 6.495 16 N -0.325 5.325 17 C 0.044 3.956 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.147 4.147 22 C 0.341 3.659 23 N -0.388 5.388 24 O -0.479 6.479 25 C -0.118 4.118 26 C 0.021 3.979 27 C -0.073 4.073 28 H 0.073 0.927 29 H -0.027 1.027 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.265 0.735 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.253 0.747 40 H 0.244 0.756 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.023 0.977 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.961 -31.057 0.130 32.324 hybrid contribution -0.986 1.342 -0.980 1.932 sum 7.975 -29.715 -0.850 30.778 Atomic orbital electron populations 1.70082 1.07724 1.27898 1.51783 1.25910 0.95737 1.03217 0.94840 0.85390 0.78711 0.78326 0.78250 1.20247 1.20756 1.18605 1.21466 0.93754 0.90943 1.49975 0.91575 1.19383 0.90017 0.88807 0.93573 1.62023 1.27006 1.03123 1.33821 1.22559 0.95823 0.90040 1.00975 1.21957 0.90828 0.98814 0.88200 1.47432 1.49466 1.06988 1.31896 1.16009 0.79962 0.81126 0.82592 1.90940 1.46434 1.85669 1.26459 1.42554 1.52073 1.03194 1.34659 1.17658 1.01189 0.86443 0.90317 1.21528 0.98900 0.90795 1.01550 1.21422 0.97497 0.98740 0.93819 1.21668 0.97645 0.96481 0.95091 1.19783 1.07001 0.95371 0.92514 1.18642 0.75428 0.83561 0.88247 1.43483 1.71882 1.10920 1.12542 1.90833 1.53094 1.34918 1.69055 1.21260 0.98602 0.97979 0.93984 1.21553 0.94437 0.80182 1.01738 1.22282 0.95491 0.99545 0.89986 0.92710 1.02677 0.96787 0.96716 0.88688 0.87009 0.88461 0.73537 0.81781 0.80325 0.81378 0.74681 0.75574 0.87957 0.89462 0.89914 0.97699 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.52 -29.34 8.41 25.60 0.22 -29.13 16 8 H 0.07 3.61 7.13 -2.91 -0.02 3.59 16 9 C 0.21 10.97 4.72 85.56 0.40 11.37 16 10 N -0.53 -22.37 4.62 -899.82 -4.16 -26.53 16 11 C 0.04 1.14 5.62 86.38 0.49 1.62 16 12 C 0.12 2.88 6.53 86.35 0.56 3.44 16 13 N -0.62 -18.38 3.01 -835.92 -2.52 -20.89 16 14 C 0.70 21.92 8.15 179.05 1.46 23.38 16 15 O -0.62 -24.91 13.29 -4.00 -0.05 -24.96 16 16 N -0.67 -14.88 5.25 -317.26 -1.66 -16.54 16 17 C 0.14 3.03 6.28 38.10 0.24 3.27 16 18 C -0.11 -1.27 9.96 22.44 0.22 -1.05 16 19 C -0.10 -0.73 10.02 22.21 0.22 -0.51 16 20 C -0.09 -0.93 9.54 22.54 0.21 -0.71 16 21 C -0.14 -3.11 5.87 -20.10 -0.12 -3.22 16 22 C 0.55 13.47 8.05 86.79 0.70 14.17 16 23 N -0.82 -9.39 8.82 -175.59 -1.55 -10.94 16 24 O -0.60 -21.97 17.18 -3.87 -0.07 -22.04 16 25 C -0.10 -2.78 8.23 22.66 0.19 -2.60 16 26 C 0.14 4.84 6.61 86.35 0.57 5.41 16 27 C 0.06 2.27 5.46 86.39 0.47 2.74 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 30 H 0.01 0.78 7.97 -2.39 -0.02 0.76 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 2.84 7.99 -2.39 -0.02 2.82 16 33 H 0.11 1.63 5.75 -2.39 -0.01 1.61 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.42 6.00 6.36 -92.71 -0.59 5.41 16 36 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.18 -0.15 8.06 -2.91 -0.02 -0.17 16 38 H 0.17 0.19 6.40 -2.91 -0.02 0.17 16 39 H 0.42 1.12 6.86 -92.71 -0.64 0.48 16 40 H 0.41 3.89 8.93 -92.71 -0.83 3.06 16 41 H 0.10 4.04 5.88 -2.91 -0.02 4.02 16 42 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.08 2.94 7.04 -2.38 -0.02 2.92 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.08 3.54 6.67 -2.39 -0.02 3.52 16 Total: -1.00 -88.83 367.31 -2.38 -91.22 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.99 Total: 11.56 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: 6.30 Total: 28.70 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -9.60 Total: -130.86 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.12 Total: -47.00 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -88.83 -2.38 -91.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364191099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.419 kcal (2) G-P(sol) polarization free energy of solvation -88.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds