Wall clock time and date at job start Sat Apr 11 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48494 * 109.47094 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47414 * 29.99744 * 3 2 1 6 6 H 1.48504 * 109.47163 * 149.99784 * 3 2 1 7 7 C 1.37869 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00110 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47456 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00265 * 170.00033 * 10 9 7 12 12 C 1.53236 * 109.34145 * 187.25656 * 11 10 9 13 13 N 1.47083 * 108.52096 * 306.17174 * 12 11 10 14 14 C 1.34773 * 120.87725 * 231.18766 * 13 12 11 15 15 O 1.21550 * 120.00758 * 356.94070 * 14 13 12 16 16 C 1.47866 * 119.99577 * 176.94680 * 14 13 12 17 17 C 1.39610 * 120.11294 * 33.15452 * 16 14 13 18 18 C 1.37980 * 119.99451 * 179.97438 * 17 16 14 19 19 C 1.38258 * 120.22116 * 359.72604 * 18 17 16 20 20 C 1.38943 * 120.22281 * 0.55257 * 19 18 17 21 21 N 1.39969 * 119.99680 * 179.72226 * 20 19 18 22 22 C 1.34780 * 119.99930 * 214.94074 * 21 20 19 23 23 N 1.34786 * 119.99795 * 175.32910 * 22 21 20 24 24 O 1.21583 * 120.00173 * 355.32380 * 22 21 20 25 25 C 1.38632 * 120.00086 * 359.44508 * 20 19 18 26 26 C 1.47078 * 118.23697 * 51.45711 * 13 12 11 27 27 C 1.46899 * 111.00037 * 294.30656 * 10 9 7 28 28 H 0.97006 * 120.00627 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47199 * 60.00080 * 9 7 2 30 30 H 1.09003 * 109.47309 * 300.00250 * 9 7 2 31 31 H 1.08994 * 109.49190 * 67.29223 * 11 10 9 32 32 H 1.09000 * 109.49412 * 307.21678 * 11 10 9 33 33 H 1.08996 * 109.62941 * 186.46205 * 12 11 10 34 34 H 1.09000 * 109.62776 * 65.87962 * 12 11 10 35 35 H 1.07999 * 120.00398 * 0.02562 * 17 16 14 36 36 H 1.08003 * 119.88891 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.88740 * 180.27679 * 19 18 17 38 38 H 0.97003 * 120.00532 * 34.93964 * 21 20 19 39 39 H 0.97003 * 119.99241 * 179.97438 * 23 22 21 40 40 H 0.96997 * 120.00036 * 359.72069 * 23 22 21 41 41 H 1.07998 * 120.10960 * 180.29485 * 25 20 19 42 42 H 1.08999 * 109.62621 * 68.25186 * 26 13 12 43 43 H 1.09001 * 109.62588 * 188.83173 * 26 13 12 44 44 H 1.08999 * 109.48887 * 292.69916 * 27 10 9 45 45 H 1.08995 * 109.49478 * 52.78630 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5216 -4.8933 0.2407 12 6 2.5643 -6.0029 0.4132 13 7 3.4613 -5.9864 -0.7523 14 6 3.7111 -7.1128 -1.4488 15 8 3.2371 -8.1709 -1.0838 16 6 4.5620 -7.0615 -2.6570 17 6 5.6190 -6.1525 -2.7312 18 6 6.4118 -6.1071 -3.8596 19 6 6.1669 -6.9635 -4.9171 20 6 5.1138 -7.8678 -4.8553 21 7 4.8667 -8.7286 -5.9310 22 6 3.6006 -9.0667 -6.2464 23 7 3.3560 -9.8187 -7.3378 24 8 2.6793 -8.6934 -5.5463 25 6 4.3115 -7.9214 -3.7260 26 6 4.0831 -4.7093 -1.1338 27 6 2.9759 -3.6495 -1.2490 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 0.8793 -5.1266 -0.6085 32 1 0.9170 -4.8186 1.1446 33 1 2.0638 -6.9691 0.4764 34 1 3.1406 -5.8257 1.3213 35 1 5.8167 -5.4855 -1.9051 36 1 7.2293 -5.4035 -3.9150 37 1 6.7936 -6.9263 -5.7959 38 1 5.6065 -9.0818 -6.4495 39 1 2.4448 -10.0623 -7.5645 40 1 4.0906 -10.1132 -7.8986 41 1 3.4954 -8.6269 -3.6742 42 1 4.8026 -4.4103 -0.3715 43 1 4.5873 -4.8199 -2.0938 44 1 2.3135 -3.9002 -2.0774 45 1 3.4262 -2.6727 -1.4254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364497014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:41 Heat of formation + Delta-G solvation = 1.863025 kcal Electronic energy + Delta-G solvation = -28382.722581 eV Core-core repulsion = 24401.379774 eV Total energy + Delta-G solvation = -3981.342807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.04235 -40.13985 -38.41847 -37.34699 -35.16874 -34.40919 -33.97595 -32.44280 -31.52791 -30.70847 -29.39035 -28.20621 -25.74651 -24.06334 -23.69968 -22.92003 -21.85304 -21.27534 -20.64731 -19.26408 -18.69308 -18.16015 -16.89621 -16.66952 -16.37000 -15.98598 -15.80329 -15.28887 -15.11583 -14.91797 -14.69734 -14.43874 -14.31636 -13.91170 -13.63645 -13.59911 -13.43174 -13.04189 -12.64399 -12.44228 -11.90969 -11.88706 -11.64010 -11.25816 -11.07789 -10.91770 -10.72969 -10.70430 -10.51084 -10.44631 -10.42706 -10.11860 -9.87907 -9.56939 -9.25327 -9.08598 -8.47911 -8.38643 -8.34028 -7.28391 -6.03949 -4.06009 0.77538 1.16494 2.34919 2.68627 2.89924 3.17962 3.30536 3.37091 3.40671 3.71093 3.97461 4.40565 4.47365 4.69603 4.85913 4.87989 4.96008 5.21691 5.27404 5.30959 5.35657 5.46108 5.57628 5.66584 5.71265 5.81201 5.89003 5.93494 6.06437 6.09589 6.17192 6.23475 6.34411 6.36495 6.45280 6.50096 6.53477 6.71402 6.78788 7.25646 7.32603 7.41805 7.59040 7.76884 8.04729 8.15098 8.15595 8.30958 8.50613 9.01141 9.58334 11.06929 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014836 B = 0.002719 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.869088 B =10296.681306 C =10661.731480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.119 3.881 13 N -0.599 5.599 14 C 0.558 3.442 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.107 4.107 19 C -0.126 4.126 20 C 0.150 3.850 21 N -0.684 5.684 22 C 0.702 3.298 23 N -0.862 5.862 24 O -0.568 6.568 25 C -0.065 4.065 26 C 0.078 3.922 27 C 0.050 3.950 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.407 0.593 39 H 0.419 0.581 40 H 0.398 0.602 41 H 0.150 0.850 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.026 0.974 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -18.034 -14.421 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.003 4.003 13 N -0.331 5.331 14 C 0.347 3.653 15 O -0.423 6.423 16 C -0.110 4.110 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.147 4.147 20 C 0.056 3.944 21 N -0.333 5.333 22 C 0.401 3.599 23 N -0.431 5.431 24 O -0.443 6.443 25 C -0.086 4.086 26 C -0.044 4.044 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.243 0.757 39 H 0.252 0.748 40 H 0.225 0.775 41 H 0.167 0.833 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.044 0.956 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.046 -18.021 -13.174 26.375 hybrid contribution 0.052 0.539 -1.434 1.533 sum 14.098 -17.483 -14.609 26.792 Atomic orbital electron populations 1.69960 1.06104 1.26828 1.50817 1.24998 0.94857 0.99350 0.95417 0.86499 0.79803 0.83110 0.78008 1.20747 1.21277 1.19735 1.21133 0.93447 0.89864 1.50267 0.91794 1.19730 0.90037 0.87188 0.96232 1.62101 1.28095 1.02692 1.33196 1.22409 0.94969 0.90544 1.00988 1.21782 0.91685 0.99591 0.87260 1.48081 1.46587 1.08386 1.30020 1.18259 0.80580 0.83668 0.82831 1.90747 1.52683 1.29337 1.69520 1.19810 0.97615 0.98394 0.95146 1.21849 0.94629 0.97379 0.99679 1.20903 0.99640 0.98907 0.93062 1.21001 0.98715 0.95148 0.99854 1.17307 0.97414 0.92692 0.87009 1.42458 1.07311 1.50209 1.33350 1.15985 0.83030 0.79189 0.81723 1.42952 1.13243 1.58270 1.28585 1.91061 1.43110 1.58189 1.51929 1.21320 0.99557 0.98132 0.89578 1.23047 0.96820 0.82618 1.01878 1.22433 0.95144 0.98968 0.91417 0.92883 0.99113 0.95030 0.95467 0.89993 0.89353 0.90755 0.83296 0.84730 0.85399 0.75723 0.74814 0.77451 0.83259 0.90258 0.87515 0.95591 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -14.00 8.41 -34.44 -0.29 -14.29 16 8 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 9 C 0.19 5.02 4.72 -4.97 -0.02 4.99 16 10 N -0.54 -11.48 4.62 -235.47 -1.09 -12.57 16 11 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 12 C 0.12 1.99 6.59 -3.60 -0.02 1.97 16 13 N -0.60 -9.89 3.00 -173.29 -0.52 -10.41 16 14 C 0.56 9.64 7.46 -12.32 -0.09 9.55 16 15 O -0.54 -10.98 16.24 5.32 0.09 -10.90 16 16 C -0.11 -1.54 5.53 -104.99 -0.58 -2.12 16 17 C -0.12 -1.30 7.45 -39.16 -0.29 -1.60 16 18 C -0.11 -0.94 10.02 -39.67 -0.40 -1.33 16 19 C -0.13 -1.07 9.96 -39.31 -0.39 -1.46 16 20 C 0.15 1.63 6.29 -83.74 -0.53 1.10 16 21 N -0.68 -5.43 5.34 -14.25 -0.08 -5.51 16 22 C 0.70 7.12 8.68 -86.91 -0.75 6.36 16 23 N -0.86 -4.35 8.88 27.64 0.25 -4.10 16 24 O -0.57 -8.94 14.62 5.29 0.08 -8.86 16 25 C -0.06 -0.94 8.25 -38.98 -0.32 -1.26 16 26 C 0.08 1.18 5.08 -3.36 -0.02 1.16 16 27 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 30 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.49 7.99 -51.93 -0.41 1.07 16 33 H 0.09 1.47 7.08 -51.93 -0.37 1.11 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.15 1.49 5.29 -52.49 -0.28 1.21 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.41 1.48 8.84 -40.82 -0.36 1.11 16 39 H 0.42 1.89 8.93 -40.82 -0.36 1.53 16 40 H 0.40 0.51 8.85 -40.82 -0.36 0.15 16 41 H 0.15 2.56 6.14 -52.49 -0.32 2.24 16 42 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 43 H 0.11 1.37 3.65 -52.25 -0.19 1.18 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 1.91 6.67 -51.93 -0.35 1.56 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -37.40 365.46 -9.79 -47.18 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.89 Total: 3.09 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -3.85 Total: 6.20 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.70 Total: -58.50 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.16 Total: -19.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.40 -9.79 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364497014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.046 kcal (2) G-P(sol) polarization free energy of solvation -37.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds