Wall clock time and date at job start Sat Apr 11 2020 03:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48494 * 109.47094 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47414 * 29.99744 * 3 2 1 6 6 H 1.48504 * 109.47163 * 149.99784 * 3 2 1 7 7 C 1.37869 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00110 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47456 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00265 * 170.00033 * 10 9 7 12 12 C 1.53236 * 109.34145 * 187.25656 * 11 10 9 13 13 N 1.47083 * 108.52096 * 306.17174 * 12 11 10 14 14 C 1.34773 * 120.87725 * 231.18766 * 13 12 11 15 15 O 1.21550 * 120.00758 * 356.94070 * 14 13 12 16 16 C 1.47866 * 119.99577 * 176.94680 * 14 13 12 17 17 C 1.39610 * 120.11294 * 33.15452 * 16 14 13 18 18 C 1.37980 * 119.99451 * 179.97438 * 17 16 14 19 19 C 1.38258 * 120.22116 * 359.72604 * 18 17 16 20 20 C 1.38943 * 120.22281 * 0.55257 * 19 18 17 21 21 N 1.39969 * 119.99680 * 179.72226 * 20 19 18 22 22 C 1.34780 * 119.99930 * 214.94074 * 21 20 19 23 23 N 1.34786 * 119.99795 * 175.32910 * 22 21 20 24 24 O 1.21583 * 120.00173 * 355.32380 * 22 21 20 25 25 C 1.38632 * 120.00086 * 359.44508 * 20 19 18 26 26 C 1.47078 * 118.23697 * 51.45711 * 13 12 11 27 27 C 1.46899 * 111.00037 * 294.30656 * 10 9 7 28 28 H 0.97006 * 120.00627 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47199 * 60.00080 * 9 7 2 30 30 H 1.09003 * 109.47309 * 300.00250 * 9 7 2 31 31 H 1.08994 * 109.49190 * 67.29223 * 11 10 9 32 32 H 1.09000 * 109.49412 * 307.21678 * 11 10 9 33 33 H 1.08996 * 109.62941 * 186.46205 * 12 11 10 34 34 H 1.09000 * 109.62776 * 65.87962 * 12 11 10 35 35 H 1.07999 * 120.00398 * 0.02562 * 17 16 14 36 36 H 1.08003 * 119.88891 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.88740 * 180.27679 * 19 18 17 38 38 H 0.97003 * 120.00532 * 34.93964 * 21 20 19 39 39 H 0.97003 * 119.99241 * 179.97438 * 23 22 21 40 40 H 0.96997 * 120.00036 * 359.72069 * 23 22 21 41 41 H 1.07998 * 120.10960 * 180.29485 * 25 20 19 42 42 H 1.08999 * 109.62621 * 68.25186 * 26 13 12 43 43 H 1.09001 * 109.62588 * 188.83173 * 26 13 12 44 44 H 1.08999 * 109.48887 * 292.69916 * 27 10 9 45 45 H 1.08995 * 109.49478 * 52.78630 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5216 -4.8933 0.2407 12 6 2.5643 -6.0029 0.4132 13 7 3.4613 -5.9864 -0.7523 14 6 3.7111 -7.1128 -1.4488 15 8 3.2371 -8.1709 -1.0838 16 6 4.5620 -7.0615 -2.6570 17 6 5.6190 -6.1525 -2.7312 18 6 6.4118 -6.1071 -3.8596 19 6 6.1669 -6.9635 -4.9171 20 6 5.1138 -7.8678 -4.8553 21 7 4.8667 -8.7286 -5.9310 22 6 3.6006 -9.0667 -6.2464 23 7 3.3560 -9.8187 -7.3378 24 8 2.6793 -8.6934 -5.5463 25 6 4.3115 -7.9214 -3.7260 26 6 4.0831 -4.7093 -1.1338 27 6 2.9759 -3.6495 -1.2490 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 0.8793 -5.1266 -0.6085 32 1 0.9170 -4.8186 1.1446 33 1 2.0638 -6.9691 0.4764 34 1 3.1406 -5.8257 1.3213 35 1 5.8167 -5.4855 -1.9051 36 1 7.2293 -5.4035 -3.9150 37 1 6.7936 -6.9263 -5.7959 38 1 5.6065 -9.0818 -6.4495 39 1 2.4448 -10.0623 -7.5645 40 1 4.0906 -10.1132 -7.8986 41 1 3.4954 -8.6269 -3.6742 42 1 4.8026 -4.4103 -0.3715 43 1 4.5873 -4.8199 -2.0938 44 1 2.3135 -3.9002 -2.0774 45 1 3.4262 -2.6727 -1.4254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364497014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:40 Heat of formation + Delta-G solvation = -29.182386 kcal Electronic energy + Delta-G solvation = -28384.068811 eV Core-core repulsion = 24401.379774 eV Total energy + Delta-G solvation = -3982.689037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97631 -41.24889 -39.46731 -38.82262 -36.26827 -35.77506 -34.76154 -34.35728 -32.69474 -31.84666 -30.33481 -29.96365 -27.47861 -25.22389 -24.99124 -24.01506 -23.52453 -22.16997 -21.97168 -20.52228 -19.38690 -19.14952 -18.48941 -17.89590 -17.59254 -17.12180 -16.75328 -16.67100 -16.30431 -16.18623 -16.01788 -15.82244 -15.49525 -15.32700 -15.03510 -14.89942 -14.51459 -14.29628 -14.14235 -13.72585 -13.50711 -13.13433 -12.96479 -12.76577 -12.65419 -12.59298 -12.34656 -12.19016 -12.13599 -11.78319 -11.56706 -11.33187 -11.28401 -10.84433 -10.75865 -10.61377 -10.03208 -9.77235 -9.15012 -9.11061 -8.19268 -6.30297 -0.12250 0.31427 1.44534 1.46460 1.58035 1.59709 1.70605 1.88001 2.05713 2.42358 2.79508 3.13018 3.21551 3.33931 3.51599 3.87196 3.96237 3.98815 4.11779 4.17630 4.22715 4.25664 4.38049 4.42763 4.51113 4.54313 4.67684 4.79064 4.89211 4.91095 4.97378 5.15289 5.18765 5.21125 5.27467 5.34794 5.40937 5.45550 5.64302 5.80635 5.89328 5.96343 6.01146 6.18404 6.33995 6.52376 6.85469 6.93690 6.98821 7.39877 7.49806 8.92532 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014836 B = 0.002719 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.869088 B =10296.681306 C =10661.731480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.207 3.793 10 N -0.534 5.534 11 C 0.043 3.957 12 C 0.127 3.873 13 N -0.602 5.602 14 C 0.553 3.447 15 O -0.586 6.586 16 C -0.132 4.132 17 C -0.120 4.120 18 C -0.093 4.093 19 C -0.106 4.106 20 C 0.145 3.855 21 N -0.668 5.668 22 C 0.693 3.307 23 N -0.837 5.837 24 O -0.632 6.632 25 C -0.095 4.095 26 C 0.090 3.910 27 C 0.049 3.951 28 H 0.264 0.736 29 H -0.046 1.046 30 H 0.005 0.995 31 H 0.007 0.993 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.431 0.569 39 H 0.423 0.577 40 H 0.419 0.581 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.005 0.995 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.434 -17.128 -16.356 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.558 4.558 8 H 0.092 0.908 9 C 0.081 3.919 10 N -0.259 5.259 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.333 5.333 14 C 0.344 3.656 15 O -0.468 6.468 16 C -0.136 4.136 17 C -0.138 4.138 18 C -0.111 4.111 19 C -0.127 4.127 20 C 0.050 3.950 21 N -0.319 5.319 22 C 0.392 3.608 23 N -0.406 5.406 24 O -0.512 6.512 25 C -0.116 4.116 26 C -0.031 4.031 27 C -0.080 4.080 28 H 0.072 0.928 29 H -0.028 1.028 30 H 0.023 0.977 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.181 0.819 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.271 0.729 39 H 0.257 0.743 40 H 0.251 0.749 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.153 0.847 44 H 0.023 0.977 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.686 -17.165 -15.178 29.566 hybrid contribution -1.379 0.156 -0.936 1.674 sum 17.307 -17.008 -16.114 29.128 Atomic orbital electron populations 1.70113 1.08068 1.27953 1.51841 1.26004 0.95706 1.03553 0.94738 0.85304 0.78646 0.77752 0.78448 1.19722 1.21268 1.18195 1.21453 0.93965 0.90422 1.49969 0.90803 1.19402 0.90146 0.89128 0.93235 1.62069 1.26902 1.02321 1.34574 1.22439 0.95589 0.90281 1.00322 1.21666 0.91423 0.98185 0.88322 1.48175 1.46432 1.08907 1.29793 1.18851 0.80374 0.83048 0.83374 1.90705 1.54572 1.30846 1.70666 1.19665 0.99135 1.00745 0.94063 1.22009 0.93866 0.96664 1.01283 1.21427 0.99429 0.98764 0.91508 1.21501 0.97233 0.92857 1.01070 1.17472 0.97454 0.93643 0.86432 1.42249 1.07392 1.49574 1.32640 1.16316 0.82978 0.79353 0.82170 1.42726 1.14415 1.56392 1.27088 1.91039 1.45189 1.60730 1.54215 1.21134 1.00134 0.98588 0.91788 1.23175 0.95290 0.80311 1.04354 1.22508 0.95595 1.00412 0.89493 0.92764 1.02794 0.97700 0.97453 0.89622 0.89664 0.88959 0.81907 0.80481 0.80865 0.72930 0.74331 0.74889 0.87355 0.87957 0.84685 0.97712 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.29 21.44 0.28 -56.85 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.52 -28.93 8.41 25.60 0.22 -28.71 16 8 H 0.07 3.89 7.13 -2.91 -0.02 3.87 16 9 C 0.21 11.26 4.72 85.56 0.40 11.67 16 10 N -0.53 -23.49 4.62 -898.90 -4.15 -27.64 16 11 C 0.04 1.70 5.62 86.38 0.49 2.19 16 12 C 0.13 4.33 6.59 86.35 0.57 4.90 16 13 N -0.60 -20.05 3.00 -820.44 -2.46 -22.51 16 14 C 0.55 19.81 7.46 86.79 0.65 20.46 16 15 O -0.59 -25.23 16.24 -3.87 -0.06 -25.29 16 16 C -0.13 -3.85 5.53 -20.10 -0.11 -3.96 16 17 C -0.12 -2.34 7.45 22.54 0.17 -2.17 16 18 C -0.09 -1.17 10.02 22.21 0.22 -0.94 16 19 C -0.11 -1.29 9.96 22.44 0.22 -1.07 16 20 C 0.15 2.90 6.29 38.10 0.24 3.14 16 21 N -0.67 -9.38 5.34 -317.27 -1.70 -11.07 16 22 C 0.69 13.89 8.68 179.05 1.55 15.45 16 23 N -0.84 -7.35 8.88 -184.74 -1.64 -8.99 16 24 O -0.63 -21.18 14.62 -3.98 -0.06 -21.23 16 25 C -0.09 -2.84 8.25 22.66 0.19 -2.65 16 26 C 0.09 2.57 5.08 86.50 0.44 3.01 16 27 C 0.05 1.87 5.47 86.54 0.47 2.34 16 28 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 29 H -0.05 -2.76 8.12 -2.39 -0.02 -2.78 16 30 H 0.00 0.29 7.97 -2.39 -0.02 0.27 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 3.28 7.99 -2.39 -0.02 3.26 16 33 H 0.09 2.99 7.08 -2.39 -0.02 2.97 16 34 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.16 2.65 5.29 -2.91 -0.02 2.63 16 36 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.43 1.65 8.84 -92.71 -0.82 0.83 16 39 H 0.42 3.50 8.93 -92.71 -0.83 2.67 16 40 H 0.42 -0.01 8.85 -92.71 -0.82 -0.83 16 41 H 0.11 4.12 6.14 -2.91 -0.02 4.11 16 42 H 0.10 2.53 8.12 -2.39 -0.02 2.51 16 43 H 0.14 3.15 3.65 -2.69 -0.01 3.14 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.09 3.65 6.67 -2.39 -0.02 3.63 16 Total: -1.00 -89.00 365.46 -2.98 -91.98 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -1.40 Total: 12.25 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 6.18 Total: 23.96 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -9.67 Total: -127.06 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.12 Total: -46.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -89.00 -2.98 -91.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364497014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.798 kcal (2) G-P(sol) polarization free energy of solvation -89.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds