Wall clock time and date at job start Sat Apr 11 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 O 1.42898 * 109.47243 * 60.00305 * 9 7 2 12 12 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 13 13 N 1.46902 * 109.47217 * 180.02562 * 12 9 7 14 14 C 1.46958 * 110.99664 * 293.79800 * 13 12 9 15 15 C 1.53058 * 109.36078 * 176.81103 * 14 13 12 16 16 N 1.46959 * 109.36276 * 58.40333 * 15 14 13 17 17 C 1.46902 * 110.99873 * 176.81105 * 16 15 14 18 18 C 1.52991 * 109.47099 * 313.79742 * 17 16 15 19 19 H 1.08997 * 110.70563 * 60.70119 * 18 17 16 20 20 C 1.55047 * 110.79203 * 184.02267 * 18 17 16 21 21 C 1.54041 * 106.54194 * 160.52710 * 20 18 17 22 22 C 1.54162 * 108.85699 * 313.10715 * 21 20 18 23 23 S 1.82920 * 105.08261 * 27.78951 * 22 21 20 24 24 O 1.42104 * 109.35201 * 244.47805 * 23 22 21 25 25 O 1.42096 * 109.47619 * 111.31316 * 23 22 21 26 26 C 1.46963 * 110.88127 * 300.67797 * 16 15 14 27 27 C 1.46959 * 110.99873 * 170.00044 * 13 12 9 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96698 * 114.00284 * 59.99755 * 11 9 7 30 30 H 1.09002 * 109.46926 * 299.99825 * 12 9 7 31 31 H 1.08998 * 109.46837 * 60.00021 * 12 9 7 32 32 H 1.08999 * 109.48748 * 296.77491 * 14 13 12 33 33 H 1.08997 * 109.49159 * 56.84650 * 14 13 12 34 34 H 1.08999 * 109.49009 * 298.43619 * 15 14 13 35 35 H 1.08994 * 109.48971 * 178.36543 * 15 14 13 36 36 H 1.08998 * 109.46769 * 73.79912 * 17 16 15 37 37 H 1.09007 * 109.46921 * 193.79850 * 17 16 15 38 38 H 1.09001 * 110.02801 * 279.99536 * 20 18 17 39 39 H 1.09008 * 110.02560 * 41.41101 * 20 18 17 40 40 H 1.09003 * 109.67090 * 193.15352 * 21 20 18 41 41 H 1.08995 * 109.36633 * 72.88442 * 21 20 18 42 42 H 1.08999 * 110.32252 * 268.88532 * 22 21 20 43 43 H 1.09001 * 110.32340 * 146.68517 * 22 21 20 44 44 H 1.08999 * 109.48463 * 299.35865 * 26 16 15 45 45 H 1.08997 * 109.49146 * 179.28889 * 26 16 15 46 46 H 1.09002 * 109.48456 * 303.15103 * 27 13 12 47 47 H 1.08999 * 109.48917 * 63.22124 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5107 -4.9343 -0.0012 14 6 0.7676 -5.1139 1.2539 15 6 -0.0450 -6.4089 1.1816 16 7 0.8618 -7.5405 0.9433 17 6 0.1273 -8.8127 0.9427 18 6 -0.8230 -8.8535 2.1410 19 1 -1.5470 -8.0406 2.0866 20 6 -1.5410 -10.2249 2.2276 21 6 -2.0602 -10.3577 3.6718 22 6 -0.9303 -9.9677 4.6454 23 16 0.1125 -8.7869 3.7158 24 8 1.4026 -9.3499 3.5212 25 8 -0.0157 -7.4914 4.2854 26 6 1.6051 -7.3609 -0.3117 27 6 2.4176 -6.0659 -0.2394 28 1 -0.4850 0.8401 0.0004 29 1 0.9209 -2.5291 -1.9984 30 1 2.8719 -3.6044 -0.8906 31 1 2.8719 -3.6044 0.8894 32 1 1.4685 -5.1704 2.0867 33 1 0.0940 -4.2697 1.4017 34 1 -0.7647 -6.3416 0.3657 35 1 -0.5744 -6.5591 2.1224 36 1 -0.4470 -8.9001 0.0204 37 1 0.8337 -9.6401 1.0108 38 1 -2.3729 -10.2559 1.5240 39 1 -0.8376 -11.0289 2.0104 40 1 -2.3658 -11.3872 3.8587 41 1 -2.9114 -9.6916 3.8125 42 1 -0.3500 -10.8474 4.9237 43 1 -1.3439 -9.4896 5.5333 44 1 0.9041 -7.3043 -1.1445 45 1 2.2786 -8.2050 -0.4595 46 1 2.9469 -5.9157 -1.1804 47 1 3.1372 -6.1332 0.5765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364782300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:43 Heat of formation + Delta-G solvation = -102.184610 kcal Electronic energy + Delta-G solvation = -28064.089133 eV Core-core repulsion = 24181.385682 eV Total energy + Delta-G solvation = -3882.703450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.34417 -37.35200 -37.00382 -36.18911 -35.84284 -34.35982 -32.02095 -31.42269 -30.54655 -28.75193 -26.96761 -25.53296 -23.94067 -23.52710 -22.36546 -21.47943 -20.32167 -19.48904 -18.72066 -17.32618 -17.03605 -16.68956 -16.11807 -15.70857 -15.04568 -14.81259 -14.69934 -14.61234 -14.54174 -14.33731 -14.29522 -13.93409 -13.57511 -13.44129 -13.22048 -12.79492 -12.47442 -12.26687 -12.17788 -12.16117 -12.05279 -11.84294 -11.64552 -11.40887 -11.09581 -10.97535 -10.92587 -10.84478 -10.81665 -10.78518 -10.50167 -10.32193 -10.24239 -9.96054 -8.91777 -8.50498 -8.43185 -8.03319 -7.56689 -5.94966 -4.12924 -0.14797 2.41346 3.32877 3.37752 3.37938 3.39833 3.60062 3.85659 4.05361 4.16455 4.32080 4.34267 4.37351 4.52759 4.56717 4.77912 4.98233 5.06257 5.13611 5.26026 5.32115 5.32844 5.34729 5.38612 5.42304 5.47802 5.58315 5.60917 5.71583 5.79545 5.95302 6.16044 6.16883 6.31120 6.38025 6.47133 6.64531 6.86531 6.92720 6.99143 7.60703 7.69695 7.84165 7.94914 8.26739 8.90836 9.51893 9.68337 11.09179 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.002770 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.975160 B =10105.864117 C =10481.056760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.237 3.763 10 H 0.055 0.945 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.528 5.528 14 C 0.058 3.942 15 C 0.043 3.957 16 N -0.552 5.552 17 C 0.079 3.921 18 C -0.559 4.559 19 H 0.147 0.853 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.610 4.610 23 S 2.398 3.602 24 O -0.921 6.921 25 O -0.927 6.927 26 C 0.065 3.935 27 C 0.053 3.947 28 H 0.260 0.740 29 H 0.342 0.658 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -25.015 4.907 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.097 4.097 13 N -0.253 5.253 14 C -0.070 4.070 15 C -0.085 4.085 16 N -0.278 5.278 17 C -0.050 4.050 18 C -0.668 4.668 19 H 0.164 0.836 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.738 4.738 23 S 2.578 3.422 24 O -0.918 6.918 25 O -0.924 6.924 26 C -0.063 4.063 27 C -0.076 4.076 28 H 0.070 0.930 29 H 0.185 0.815 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.094 -24.437 5.647 25.413 hybrid contribution 0.260 0.575 -0.439 0.769 sum -3.833 -23.862 5.208 24.723 Atomic orbital electron populations 1.70074 1.05894 1.26431 1.47074 1.25022 0.94687 0.99035 0.93897 0.86735 0.79705 0.83238 0.78645 1.21233 1.20208 1.20194 1.21630 0.93115 0.91667 1.54821 0.92807 1.19314 0.87827 0.88517 0.86436 0.92767 1.86551 1.37759 1.96318 1.14971 1.23072 0.97278 0.89701 0.99600 1.62214 1.27090 1.01956 1.34018 1.22130 0.97605 0.96555 0.90755 1.22462 0.94667 0.90300 1.01029 1.62389 1.27243 1.01678 1.36483 1.21759 0.94467 0.93953 0.94805 1.30673 1.11818 1.05921 1.18430 0.83561 1.22313 1.01926 0.93782 0.97438 1.21903 0.97131 1.04623 0.91531 1.30680 1.13516 1.17829 1.11804 1.09180 0.77372 0.76748 0.78880 1.93593 1.34257 1.79425 1.84543 1.93626 1.87080 1.35891 1.75836 1.22115 0.96931 0.97948 0.89293 1.22152 0.94305 0.90325 1.00816 0.92999 0.81547 0.91875 0.95407 0.94450 0.89014 0.93137 0.90325 0.92552 0.88815 0.88294 0.89408 0.89029 0.89696 0.84752 0.84581 0.93537 0.90476 0.90561 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 12.84 55.43 0.71 -25.08 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.57 -16.06 8.76 -34.44 -0.30 -16.36 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.14 2.70 -27.89 -0.08 6.06 16 10 H 0.05 1.55 6.49 -51.92 -0.34 1.21 16 11 O -0.55 -14.66 12.59 -35.23 -0.44 -15.10 16 12 C 0.03 0.66 4.56 -3.82 -0.02 0.65 16 13 N -0.53 -10.05 4.58 -234.46 -1.07 -11.12 16 14 C 0.06 1.09 5.41 -3.76 -0.02 1.07 16 15 C 0.04 0.66 4.94 -3.76 -0.02 0.64 16 16 N -0.55 -7.55 4.57 -234.46 -1.07 -8.62 16 17 C 0.08 0.78 4.51 -3.83 -0.02 0.77 16 18 C -0.56 -4.59 2.43 -25.65 -0.06 -4.65 16 19 H 0.15 1.15 6.38 -51.93 -0.33 0.81 16 20 C -0.12 -0.55 5.93 -25.11 -0.15 -0.70 16 21 C -0.11 -0.48 6.39 -25.58 -0.16 -0.64 16 22 C -0.61 -3.61 7.27 37.76 0.27 -3.34 16 23 S 2.40 25.43 5.43 -107.50 -0.58 24.85 16 24 O -0.92 -12.66 17.39 -57.73 -1.00 -13.66 16 25 O -0.93 -13.63 17.06 -57.73 -0.98 -14.62 16 26 C 0.06 0.86 5.58 -3.76 -0.02 0.84 16 27 C 0.05 0.83 5.61 -3.77 -0.02 0.81 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.34 8.15 9.04 45.56 0.41 8.56 16 30 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 31 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.91 6.34 -51.93 -0.33 1.58 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.10 4.75 -51.93 -0.25 0.86 16 36 H 0.06 0.49 8.08 -51.93 -0.42 0.08 16 37 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.33 8.08 -51.92 -0.42 -0.09 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -36.26 373.52 -11.64 -47.89 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.11 Total: 6.01 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.69 Total: -12.69 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -1.43 Total: -44.82 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -2.43 Total: -43.38 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 25.43 SS G_CDS: -0.58 Total: 24.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.26 -11.64 -47.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364782300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.294 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds