Wall clock time and date at job start Sat Apr 11 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 O 1.42898 * 109.47243 * 60.00305 * 9 7 2 12 12 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 13 13 N 1.46902 * 109.47217 * 180.02562 * 12 9 7 14 14 C 1.46958 * 110.99664 * 293.79800 * 13 12 9 15 15 C 1.53058 * 109.36078 * 176.81103 * 14 13 12 16 16 N 1.46959 * 109.36276 * 58.40333 * 15 14 13 17 17 C 1.46902 * 110.99873 * 176.81105 * 16 15 14 18 18 C 1.52991 * 109.47099 * 313.79742 * 17 16 15 19 19 H 1.08997 * 110.70563 * 60.70119 * 18 17 16 20 20 C 1.55047 * 110.79203 * 184.02267 * 18 17 16 21 21 C 1.54041 * 106.54194 * 160.52710 * 20 18 17 22 22 C 1.54162 * 108.85699 * 313.10715 * 21 20 18 23 23 S 1.82920 * 105.08261 * 27.78951 * 22 21 20 24 24 O 1.42104 * 109.35201 * 244.47805 * 23 22 21 25 25 O 1.42096 * 109.47619 * 111.31316 * 23 22 21 26 26 C 1.46963 * 110.88127 * 300.67797 * 16 15 14 27 27 C 1.46959 * 110.99873 * 170.00044 * 13 12 9 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.96698 * 114.00284 * 59.99755 * 11 9 7 30 30 H 1.09002 * 109.46926 * 299.99825 * 12 9 7 31 31 H 1.08998 * 109.46837 * 60.00021 * 12 9 7 32 32 H 1.08999 * 109.48748 * 296.77491 * 14 13 12 33 33 H 1.08997 * 109.49159 * 56.84650 * 14 13 12 34 34 H 1.08999 * 109.49009 * 298.43619 * 15 14 13 35 35 H 1.08994 * 109.48971 * 178.36543 * 15 14 13 36 36 H 1.08998 * 109.46769 * 73.79912 * 17 16 15 37 37 H 1.09007 * 109.46921 * 193.79850 * 17 16 15 38 38 H 1.09001 * 110.02801 * 279.99536 * 20 18 17 39 39 H 1.09008 * 110.02560 * 41.41101 * 20 18 17 40 40 H 1.09003 * 109.67090 * 193.15352 * 21 20 18 41 41 H 1.08995 * 109.36633 * 72.88442 * 21 20 18 42 42 H 1.08999 * 110.32252 * 268.88532 * 22 21 20 43 43 H 1.09001 * 110.32340 * 146.68517 * 22 21 20 44 44 H 1.08999 * 109.48463 * 299.35865 * 26 16 15 45 45 H 1.08997 * 109.49146 * 179.28889 * 26 16 15 46 46 H 1.09002 * 109.48456 * 303.15103 * 27 13 12 47 47 H 1.08999 * 109.48917 * 63.22124 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5107 -4.9343 -0.0012 14 6 0.7676 -5.1139 1.2539 15 6 -0.0450 -6.4089 1.1816 16 7 0.8618 -7.5405 0.9433 17 6 0.1273 -8.8127 0.9427 18 6 -0.8230 -8.8535 2.1410 19 1 -1.5470 -8.0406 2.0866 20 6 -1.5410 -10.2249 2.2276 21 6 -2.0602 -10.3577 3.6718 22 6 -0.9303 -9.9677 4.6454 23 16 0.1125 -8.7869 3.7158 24 8 1.4026 -9.3499 3.5212 25 8 -0.0157 -7.4914 4.2854 26 6 1.6051 -7.3609 -0.3117 27 6 2.4176 -6.0659 -0.2394 28 1 -0.4850 0.8401 0.0004 29 1 0.9209 -2.5291 -1.9984 30 1 2.8719 -3.6044 -0.8906 31 1 2.8719 -3.6044 0.8894 32 1 1.4685 -5.1704 2.0867 33 1 0.0940 -4.2697 1.4017 34 1 -0.7647 -6.3416 0.3657 35 1 -0.5744 -6.5591 2.1224 36 1 -0.4470 -8.9001 0.0204 37 1 0.8337 -9.6401 1.0108 38 1 -2.3729 -10.2559 1.5240 39 1 -0.8376 -11.0289 2.0104 40 1 -2.3658 -11.3872 3.8587 41 1 -2.9114 -9.6916 3.8125 42 1 -0.3500 -10.8474 4.9237 43 1 -1.3439 -9.4896 5.5333 44 1 0.9041 -7.3043 -1.1445 45 1 2.2786 -8.2050 -0.4595 46 1 2.9469 -5.9157 -1.1804 47 1 3.1372 -6.1332 0.5765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364782300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:43 Heat of formation + Delta-G solvation = -134.453974 kcal Electronic energy + Delta-G solvation = -28065.488437 eV Core-core repulsion = 24181.385682 eV Total energy + Delta-G solvation = -3884.102755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56566 -38.42147 -37.98090 -37.29011 -36.89441 -35.77399 -34.21678 -32.43030 -31.76755 -30.32903 -28.23480 -26.64830 -25.36797 -24.92652 -23.27733 -22.12930 -22.06258 -20.82754 -19.55039 -19.09550 -18.01462 -17.43363 -17.27186 -16.68569 -16.60724 -16.46364 -16.13662 -15.92129 -15.68271 -15.52042 -15.34679 -15.09592 -14.90090 -14.70843 -14.49477 -13.99754 -13.58622 -13.20415 -13.13899 -13.10501 -12.99067 -12.93499 -12.84815 -12.76097 -12.73327 -12.50185 -12.33686 -12.26264 -12.10522 -11.87574 -11.75743 -11.58018 -11.49138 -10.97258 -10.96610 -10.68828 -10.10736 -9.45894 -9.17482 -8.13446 -6.39721 -0.86448 1.39620 1.41983 1.49990 1.72907 2.37971 2.65344 2.83789 2.99592 3.04254 3.12570 3.50232 3.55311 3.76597 3.86227 3.90274 4.03514 4.12684 4.14647 4.20558 4.25060 4.32548 4.40060 4.51502 4.53176 4.57926 4.63322 4.65311 4.74625 4.77573 4.86466 4.88147 4.94409 5.02448 5.04956 5.05666 5.10423 5.19230 5.59519 5.73339 5.85470 5.86485 6.02855 6.18374 6.25289 6.73105 7.34227 7.62185 8.90963 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.002770 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.975160 B =10105.864117 C =10481.056760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.240 3.760 10 H 0.017 0.983 11 O -0.568 6.568 12 C 0.047 3.953 13 N -0.531 5.531 14 C 0.058 3.942 15 C 0.055 3.945 16 N -0.569 5.569 17 C 0.074 3.926 18 C -0.546 4.546 19 H 0.148 0.852 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.579 4.579 23 S 2.360 3.640 24 O -0.967 6.967 25 O -0.989 6.989 26 C 0.068 3.932 27 C 0.049 3.951 28 H 0.262 0.738 29 H 0.353 0.647 30 H 0.075 0.925 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.881 -27.633 4.053 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.182 3.818 10 H 0.035 0.965 11 O -0.371 6.371 12 C -0.081 4.081 13 N -0.256 5.256 14 C -0.071 4.071 15 C -0.073 4.073 16 N -0.295 5.295 17 C -0.054 4.054 18 C -0.658 4.658 19 H 0.166 0.834 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.712 4.712 23 S 2.549 3.451 24 O -0.965 6.965 25 O -0.986 6.986 26 C -0.059 4.059 27 C -0.079 4.079 28 H 0.070 0.930 29 H 0.197 0.803 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.070 0.930 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.668 -27.048 4.788 27.863 hybrid contribution 0.393 1.273 -0.155 1.341 sum -4.274 -25.775 4.633 26.535 Atomic orbital electron populations 1.70220 1.07655 1.27432 1.48231 1.25915 0.95534 1.02937 0.93313 0.85585 0.78353 0.78368 0.79084 1.20821 1.19612 1.18956 1.22021 0.93500 0.92860 1.54560 0.92396 1.19113 0.87712 0.89951 0.85043 0.96524 1.86492 1.38504 1.96446 1.15615 1.22711 0.96006 0.89795 0.99608 1.62184 1.27608 1.02048 1.33752 1.22052 0.97077 0.97690 0.90239 1.22266 0.94213 0.89303 1.01555 1.62354 1.27735 1.02504 1.36943 1.21931 0.95096 0.91993 0.96357 1.30525 1.11134 1.08712 1.15471 0.83390 1.22451 1.02651 0.91440 0.98364 1.22083 0.96351 1.06656 0.90308 1.30445 1.12870 1.16198 1.11668 1.09828 0.78104 0.76733 0.80441 1.93526 1.37744 1.79637 1.85550 1.93550 1.88003 1.39695 1.77376 1.22135 0.97208 0.97246 0.89313 1.22308 0.94138 0.90341 1.01101 0.92953 0.80327 0.90612 0.96478 0.96347 0.92214 0.92982 0.89609 0.90422 0.87687 0.85947 0.87890 0.86015 0.88655 0.82766 0.83416 0.92970 0.87693 0.88918 0.95633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.33 12.84 21.45 0.28 -55.06 16 2 C 0.03 1.47 5.40 84.66 0.46 1.93 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.59 -33.84 8.76 25.60 0.22 -33.62 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.24 12.96 2.70 29.85 0.08 13.04 16 10 H 0.02 1.03 6.49 -2.38 -0.02 1.02 16 11 O -0.57 -30.89 12.59 -148.98 -1.88 -32.77 16 12 C 0.05 2.08 4.56 86.30 0.39 2.48 16 13 N -0.53 -20.80 4.58 -895.69 -4.10 -24.90 16 14 C 0.06 2.34 5.41 86.31 0.47 2.80 16 15 C 0.05 1.71 4.94 86.31 0.43 2.14 16 16 N -0.57 -15.22 4.57 -895.71 -4.09 -19.32 16 17 C 0.07 1.31 4.51 86.30 0.39 1.70 16 18 C -0.55 -7.94 2.43 31.29 0.08 -7.86 16 19 H 0.15 2.12 6.38 -2.39 -0.02 2.10 16 20 C -0.11 -0.58 5.93 31.65 0.19 -0.40 16 21 C -0.12 -0.47 6.39 31.34 0.20 -0.27 16 22 C -0.58 -5.32 7.27 72.38 0.53 -4.79 16 23 S 2.36 50.16 5.43 -56.49 -0.31 49.85 16 24 O -0.97 -27.22 17.39 -127.47 -2.22 -29.44 16 25 O -0.99 -31.20 17.06 -127.47 -2.17 -33.37 16 26 C 0.07 1.72 5.58 86.31 0.48 2.20 16 27 C 0.05 1.54 5.61 86.31 0.48 2.02 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 29 H 0.35 17.08 9.04 -74.06 -0.67 16.41 16 30 H 0.08 3.14 8.03 -2.39 -0.02 3.12 16 31 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 2.74 6.34 -2.39 -0.02 2.72 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 2.53 4.75 -2.39 -0.01 2.52 16 36 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 37 H 0.10 1.65 7.85 -2.38 -0.02 1.63 16 38 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.10 0.30 8.08 -2.38 -0.02 0.28 16 40 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 2.57 8.07 -2.39 -0.02 2.55 16 47 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -83.31 373.52 -7.78 -91.09 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.29 Total: 25.90 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.39 Total: -18.64 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -7.91 Total: -99.27 kcal Atomic # 8 Polarization: -89.31 SS G_CDS: -6.27 Total: -95.58 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.31 Total: 49.85 kcal Total: -83.31 -7.78 -91.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364782300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.368 kcal (2) G-P(sol) polarization free energy of solvation -83.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds