Wall clock time and date at job start Sat Apr 11 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48500 * 109.47090 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47093 * 120.00010 * 3 2 1 6 6 H 1.48499 * 109.47204 * 239.99542 * 3 2 1 7 7 C 1.37869 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46923 * 299.99461 * 9 7 2 11 11 O 1.42895 * 109.46864 * 59.99362 * 9 7 2 12 12 C 1.53002 * 109.46963 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.46739 * 179.97438 * 12 9 7 14 14 C 1.46958 * 111.00118 * 293.79775 * 13 12 9 15 15 C 1.53050 * 109.36385 * 176.80896 * 14 13 12 16 16 N 1.46953 * 109.36146 * 58.40519 * 15 14 13 17 17 C 1.46896 * 111.00238 * 176.80798 * 16 15 14 18 18 C 1.53005 * 109.46883 * 307.60605 * 17 16 15 19 19 H 1.08994 * 110.28597 * 58.15275 * 18 17 16 20 20 C 1.54164 * 110.31848 * 295.92535 * 18 17 16 21 21 C 1.53880 * 108.70283 * 213.19102 * 20 18 17 22 22 C 1.55047 * 106.62508 * 47.18148 * 21 20 18 23 23 S 1.82921 * 110.31701 * 180.26218 * 18 17 16 24 24 O 1.42096 * 109.35692 * 234.42338 * 23 18 17 25 25 O 1.42097 * 109.35451 * 7.63052 * 23 18 17 26 26 C 1.46958 * 110.87904 * 300.67581 * 16 15 14 27 27 C 1.46954 * 110.99797 * 169.99624 * 13 12 9 28 28 H 0.97007 * 120.00039 * 180.02562 * 1 2 3 29 29 H 0.96703 * 114.00163 * 60.00599 * 11 9 7 30 30 H 1.09004 * 109.46852 * 299.99328 * 12 9 7 31 31 H 1.08993 * 109.47169 * 59.99939 * 12 9 7 32 32 H 1.08995 * 109.48564 * 296.78402 * 14 13 12 33 33 H 1.09003 * 109.48721 * 56.84347 * 14 13 12 34 34 H 1.08994 * 109.49372 * 298.43409 * 15 14 13 35 35 H 1.09003 * 109.48348 * 178.36380 * 15 14 13 36 36 H 1.09003 * 109.47137 * 67.60262 * 17 16 15 37 37 H 1.08995 * 109.47865 * 187.60288 * 17 16 15 38 38 H 1.09000 * 109.64209 * 333.04154 * 20 18 17 39 39 H 1.08995 * 109.64814 * 93.33562 * 20 18 17 40 40 H 1.08994 * 110.02817 * 287.88470 * 21 20 18 41 41 H 1.09003 * 110.02272 * 166.47471 * 21 20 18 42 42 H 1.08997 * 110.79026 * 199.29471 * 22 21 20 43 43 H 1.09004 * 110.95243 * 75.90958 * 22 21 20 44 44 H 1.09002 * 109.48894 * 299.35014 * 26 16 15 45 45 H 1.09007 * 109.50547 * 179.30194 * 26 16 15 46 46 H 1.08994 * 109.49045 * 303.15308 * 27 13 12 47 47 H 1.09002 * 109.48747 * 63.20293 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1664 12 6 2.2454 -3.6620 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 0.7686 -5.1132 1.2568 15 6 -0.0440 -6.4082 1.1857 16 7 0.8627 -7.5399 0.9475 17 6 0.1284 -8.8121 0.9481 18 6 -0.7051 -8.9192 2.2268 19 1 -1.3954 -8.0789 2.2994 20 6 0.2149 -8.9676 3.4629 21 6 -0.4432 -9.8558 4.5333 22 6 -0.9079 -11.1479 3.8131 23 16 -1.6242 -10.5005 2.2552 24 8 -3.0075 -10.2377 2.4465 25 8 -1.1993 -11.3118 1.1687 26 6 1.6051 -7.3609 -0.3081 27 6 2.4176 -6.0659 -0.2372 28 1 -0.4850 -0.8401 0.0004 29 1 0.9223 -2.5299 -1.9975 30 1 2.8720 -3.6042 -0.8896 31 1 2.8720 -3.6042 0.8904 32 1 1.4701 -5.1691 2.0891 33 1 0.0951 -4.2690 1.4045 34 1 -0.7642 -6.3414 0.3704 35 1 -0.5727 -6.5578 2.1271 36 1 -0.5304 -8.8518 0.0806 37 1 0.8358 -9.6401 0.9051 38 1 1.1820 -9.3856 3.1838 39 1 0.3529 -7.9606 3.8566 40 1 -1.3003 -9.3425 4.9690 41 1 0.2801 -10.1013 5.3109 42 1 -1.6649 -11.6674 4.4006 43 1 -0.0626 -11.8046 3.6068 44 1 0.9036 -7.3050 -1.1405 45 1 2.2785 -8.2051 -0.4563 46 1 2.9463 -5.9163 -1.1785 47 1 3.1381 -6.1325 0.5781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364782335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:46 Heat of formation + Delta-G solvation = -109.999263 kcal Electronic energy + Delta-G solvation = -27651.954281 eV Core-core repulsion = 23768.911962 eV Total energy + Delta-G solvation = -3883.042319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.50909 -37.44752 -37.36565 -36.39379 -36.06333 -34.54065 -32.07050 -31.52422 -30.70057 -28.78311 -26.95872 -25.51354 -23.85431 -23.49708 -22.55390 -21.53002 -20.67151 -19.53170 -19.00576 -17.62293 -17.25451 -16.93656 -15.95816 -15.89575 -15.30645 -15.14909 -14.91887 -14.84898 -14.57568 -14.41330 -14.14564 -13.83566 -13.78170 -13.57876 -13.32177 -12.90559 -12.47789 -12.42805 -12.35331 -12.29116 -12.18873 -11.96475 -11.74666 -11.60890 -11.39401 -11.14368 -11.04283 -10.97894 -10.81059 -10.71497 -10.54400 -10.43884 -10.12270 -10.00085 -9.20737 -8.48645 -8.47303 -8.03426 -7.76795 -6.35858 -4.19488 -0.34443 2.15838 3.18446 3.40835 3.42015 3.50801 3.61442 3.82857 3.90705 4.16213 4.21670 4.27399 4.29387 4.53114 4.53989 4.81155 4.93207 5.00265 5.10023 5.19893 5.23472 5.24219 5.34972 5.36371 5.42462 5.47212 5.54280 5.59311 5.61488 5.70860 5.82867 5.96221 5.99592 6.06066 6.14705 6.21472 6.38630 6.64240 6.84560 6.91157 7.35985 7.49479 7.61743 8.02070 8.34533 8.85290 9.21815 9.66949 11.04159 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.002402 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.199687 B =11654.600116 C =11884.722415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.652 4.652 8 H 0.047 0.953 9 C 0.221 3.779 10 H 0.047 0.953 11 O -0.572 6.572 12 C 0.040 3.960 13 N -0.530 5.530 14 C 0.060 3.940 15 C 0.051 3.949 16 N -0.530 5.530 17 C 0.082 3.918 18 C -0.557 4.557 19 H 0.146 0.854 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.588 4.588 23 S 2.384 3.616 24 O -0.936 6.936 25 O -0.936 6.936 26 C 0.058 3.942 27 C 0.057 3.943 28 H 0.284 0.716 29 H 0.351 0.649 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -22.855 8.005 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.174 4.174 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.691 4.691 8 H 0.066 0.934 9 C 0.163 3.837 10 H 0.064 0.936 11 O -0.375 6.375 12 C -0.088 4.088 13 N -0.255 5.255 14 C -0.069 4.069 15 C -0.077 4.077 16 N -0.256 5.256 17 C -0.047 4.047 18 C -0.667 4.667 19 H 0.164 0.836 20 C -0.138 4.138 21 C -0.162 4.162 22 C -0.718 4.718 23 S 2.567 3.433 24 O -0.933 6.933 25 O -0.933 6.933 26 C -0.070 4.070 27 C -0.072 4.072 28 H 0.096 0.904 29 H 0.196 0.804 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.345 -21.663 7.828 23.036 hybrid contribution 1.357 -1.285 0.249 1.886 sum 1.702 -22.948 8.076 24.387 Atomic orbital electron populations 1.70634 1.06901 1.32293 1.42786 1.25764 0.96502 1.02400 0.92746 0.83609 0.74951 0.75523 0.76473 1.20728 1.21524 1.21433 1.22440 0.94319 0.92658 1.59643 0.93437 1.19478 0.88243 0.90240 0.85702 0.93571 1.86460 1.38756 1.96508 1.15779 1.22901 0.96921 0.89225 0.99728 1.62189 1.27327 1.02020 1.33937 1.22117 0.97368 0.96664 0.90712 1.22312 0.94467 0.89940 1.00966 1.62257 1.27110 1.01187 1.34999 1.21716 0.96162 0.94345 0.92500 1.30526 1.11302 1.21384 1.03474 0.83582 1.21909 0.98403 1.02746 0.90725 1.22281 1.02754 0.91846 0.99279 1.30616 1.13357 1.07358 1.20493 1.09362 0.76731 0.78980 0.78187 1.93630 1.28681 1.84713 1.86307 1.93600 1.83467 1.65891 1.50325 1.22178 0.97119 0.97717 0.90001 1.22116 0.94122 0.90235 1.00717 0.90379 0.80427 0.91725 0.95417 0.94779 0.89623 0.93642 0.90302 0.93559 0.88955 0.89218 0.88528 0.89578 0.88447 0.84708 0.84451 0.93686 0.90515 0.90650 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.53 55.43 0.75 -26.33 16 2 C 0.03 0.99 5.40 -17.82 -0.10 0.89 16 3 Si 1.07 24.79 29.90 -169.99 -5.08 19.71 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.65 -17.94 8.76 -34.44 -0.30 -18.24 16 8 H 0.05 1.29 7.74 -52.48 -0.41 0.88 16 9 C 0.22 5.47 2.31 -27.88 -0.06 5.40 16 10 H 0.05 1.24 6.36 -51.93 -0.33 0.91 16 11 O -0.57 -14.43 11.88 -35.23 -0.42 -14.85 16 12 C 0.04 0.81 4.56 -3.82 -0.02 0.79 16 13 N -0.53 -9.27 4.58 -234.47 -1.07 -10.35 16 14 C 0.06 0.97 5.41 -3.77 -0.02 0.95 16 15 C 0.05 0.67 5.14 -3.77 -0.02 0.65 16 16 N -0.53 -6.10 4.55 -234.47 -1.07 -7.17 16 17 C 0.08 0.78 3.90 -3.82 -0.01 0.76 16 18 C -0.56 -4.23 2.71 -26.12 -0.07 -4.30 16 19 H 0.15 1.10 6.19 -51.93 -0.32 0.78 16 20 C -0.10 -0.57 5.69 -25.66 -0.15 -0.72 16 21 C -0.12 -0.52 6.48 -25.19 -0.16 -0.69 16 22 C -0.59 -2.67 7.31 38.24 0.28 -2.39 16 23 S 2.38 19.39 5.95 -107.50 -0.64 18.75 16 24 O -0.94 -11.15 18.14 -57.71 -1.05 -12.19 16 25 O -0.94 -10.54 17.24 -57.71 -1.00 -11.53 16 26 C 0.06 0.70 5.62 -3.77 -0.02 0.68 16 27 C 0.06 0.81 5.61 -3.77 -0.02 0.79 16 28 H 0.28 8.79 6.47 -40.82 -0.26 8.53 16 29 H 0.35 8.11 9.04 45.56 0.41 8.52 16 30 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 31 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.58 6.34 -51.93 -0.33 1.25 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.86 5.97 -51.93 -0.31 0.55 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.76 8.01 -51.93 -0.42 0.35 16 38 H 0.09 0.49 7.81 -51.93 -0.41 0.08 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -35.74 373.71 -11.70 -47.43 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.08 Total: 6.32 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.68 Total: -15.42 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -1.39 Total: -43.84 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -2.46 Total: -38.57 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Atomic # 16 Polarization: 19.39 SS G_CDS: -0.64 Total: 18.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.74 -11.70 -47.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364782335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.565 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds