Wall clock time and date at job start Sat Apr 11 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48500 * 109.47090 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47093 * 120.00010 * 3 2 1 6 6 H 1.48499 * 109.47204 * 239.99542 * 3 2 1 7 7 C 1.37869 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46923 * 299.99461 * 9 7 2 11 11 O 1.42895 * 109.46864 * 59.99362 * 9 7 2 12 12 C 1.53002 * 109.46963 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.46739 * 179.97438 * 12 9 7 14 14 C 1.46958 * 111.00118 * 293.79775 * 13 12 9 15 15 C 1.53050 * 109.36385 * 176.80896 * 14 13 12 16 16 N 1.46953 * 109.36146 * 58.40519 * 15 14 13 17 17 C 1.46896 * 111.00238 * 176.80798 * 16 15 14 18 18 C 1.53005 * 109.46883 * 307.60605 * 17 16 15 19 19 H 1.08994 * 110.28597 * 58.15275 * 18 17 16 20 20 C 1.54164 * 110.31848 * 295.92535 * 18 17 16 21 21 C 1.53880 * 108.70283 * 213.19102 * 20 18 17 22 22 C 1.55047 * 106.62508 * 47.18148 * 21 20 18 23 23 S 1.82921 * 110.31701 * 180.26218 * 18 17 16 24 24 O 1.42096 * 109.35692 * 234.42338 * 23 18 17 25 25 O 1.42097 * 109.35451 * 7.63052 * 23 18 17 26 26 C 1.46958 * 110.87904 * 300.67581 * 16 15 14 27 27 C 1.46954 * 110.99797 * 169.99624 * 13 12 9 28 28 H 0.97007 * 120.00039 * 180.02562 * 1 2 3 29 29 H 0.96703 * 114.00163 * 60.00599 * 11 9 7 30 30 H 1.09004 * 109.46852 * 299.99328 * 12 9 7 31 31 H 1.08993 * 109.47169 * 59.99939 * 12 9 7 32 32 H 1.08995 * 109.48564 * 296.78402 * 14 13 12 33 33 H 1.09003 * 109.48721 * 56.84347 * 14 13 12 34 34 H 1.08994 * 109.49372 * 298.43409 * 15 14 13 35 35 H 1.09003 * 109.48348 * 178.36380 * 15 14 13 36 36 H 1.09003 * 109.47137 * 67.60262 * 17 16 15 37 37 H 1.08995 * 109.47865 * 187.60288 * 17 16 15 38 38 H 1.09000 * 109.64209 * 333.04154 * 20 18 17 39 39 H 1.08995 * 109.64814 * 93.33562 * 20 18 17 40 40 H 1.08994 * 110.02817 * 287.88470 * 21 20 18 41 41 H 1.09003 * 110.02272 * 166.47471 * 21 20 18 42 42 H 1.08997 * 110.79026 * 199.29471 * 22 21 20 43 43 H 1.09004 * 110.95243 * 75.90958 * 22 21 20 44 44 H 1.09002 * 109.48894 * 299.35014 * 26 16 15 45 45 H 1.09007 * 109.50547 * 179.30194 * 26 16 15 46 46 H 1.08994 * 109.49045 * 303.15308 * 27 13 12 47 47 H 1.09002 * 109.48747 * 63.20293 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1664 12 6 2.2454 -3.6620 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 0.7686 -5.1132 1.2568 15 6 -0.0440 -6.4082 1.1857 16 7 0.8627 -7.5399 0.9475 17 6 0.1284 -8.8121 0.9481 18 6 -0.7051 -8.9192 2.2268 19 1 -1.3954 -8.0789 2.2994 20 6 0.2149 -8.9676 3.4629 21 6 -0.4432 -9.8558 4.5333 22 6 -0.9079 -11.1479 3.8131 23 16 -1.6242 -10.5005 2.2552 24 8 -3.0075 -10.2377 2.4465 25 8 -1.1993 -11.3118 1.1687 26 6 1.6051 -7.3609 -0.3081 27 6 2.4176 -6.0659 -0.2372 28 1 -0.4850 -0.8401 0.0004 29 1 0.9223 -2.5299 -1.9975 30 1 2.8720 -3.6042 -0.8896 31 1 2.8720 -3.6042 0.8904 32 1 1.4701 -5.1691 2.0891 33 1 0.0951 -4.2690 1.4045 34 1 -0.7642 -6.3414 0.3704 35 1 -0.5727 -6.5578 2.1271 36 1 -0.5304 -8.8518 0.0806 37 1 0.8358 -9.6401 0.9051 38 1 1.1820 -9.3856 3.1838 39 1 0.3529 -7.9606 3.8566 40 1 -1.3003 -9.3425 4.9690 41 1 0.2801 -10.1013 5.3109 42 1 -1.6649 -11.6674 4.4006 43 1 -0.0626 -11.8046 3.6068 44 1 0.9036 -7.3050 -1.1405 45 1 2.2785 -8.2051 -0.4563 46 1 2.9463 -5.9163 -1.1785 47 1 3.1381 -6.1325 0.5781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364782335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:45 Heat of formation + Delta-G solvation = -141.084643 kcal Electronic energy + Delta-G solvation = -27653.302244 eV Core-core repulsion = 23768.911962 eV Total energy + Delta-G solvation = -3884.390282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62134 -38.62748 -38.13289 -37.42507 -37.06752 -35.73474 -34.23360 -32.44240 -31.81203 -30.23690 -28.02231 -26.63189 -25.22605 -24.92699 -23.35457 -22.50105 -22.06937 -20.68993 -19.68113 -19.40536 -18.25805 -17.55112 -17.23509 -16.70857 -16.59045 -16.42674 -16.02395 -15.84737 -15.73827 -15.48638 -15.39333 -15.23237 -15.01560 -14.75024 -14.46696 -14.06857 -13.79309 -13.60027 -13.25873 -13.18652 -13.10186 -12.95451 -12.72138 -12.62672 -12.52674 -12.32799 -12.25639 -12.18786 -11.95320 -11.89893 -11.82821 -11.60119 -11.54390 -11.14340 -11.06010 -10.62392 -10.07517 -9.47574 -9.19692 -8.61506 -6.46524 -0.94699 1.53083 1.59106 1.60660 1.80179 2.55211 2.56784 2.79728 2.93511 3.02362 3.17758 3.41634 3.54603 3.72466 3.83140 3.87891 3.98990 4.04693 4.13066 4.14342 4.25601 4.30362 4.35153 4.41789 4.47502 4.52475 4.56525 4.64100 4.71310 4.76633 4.82813 4.84567 4.87545 4.94195 5.03366 5.08918 5.16065 5.29457 5.44883 5.77474 5.86024 5.91120 6.06373 6.19279 6.22332 6.56267 7.24038 7.51479 8.76080 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.002402 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.199687 B =11654.600116 C =11884.722415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.018 4.018 3 Si 1.116 2.884 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.661 4.661 8 H 0.050 0.950 9 C 0.221 3.779 10 H 0.019 0.981 11 O -0.583 6.583 12 C 0.058 3.942 13 N -0.543 5.543 14 C 0.062 3.938 15 C 0.059 3.941 16 N -0.523 5.523 17 C 0.077 3.923 18 C -0.553 4.553 19 H 0.142 0.858 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.557 4.557 23 S 2.377 3.623 24 O -0.984 6.984 25 O -0.974 6.974 26 C 0.059 3.941 27 C 0.058 3.942 28 H 0.267 0.733 29 H 0.360 0.640 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.026 0.974 35 H 0.101 0.899 36 H 0.035 0.965 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.032 0.968 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -24.425 9.403 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.937 3.063 4 H -0.212 1.212 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.699 4.699 8 H 0.069 0.931 9 C 0.163 3.837 10 H 0.036 0.964 11 O -0.388 6.388 12 C -0.070 4.070 13 N -0.268 5.268 14 C -0.066 4.066 15 C -0.069 4.069 16 N -0.248 5.248 17 C -0.051 4.051 18 C -0.663 4.663 19 H 0.160 0.840 20 C -0.137 4.137 21 C -0.161 4.161 22 C -0.690 4.690 23 S 2.565 3.435 24 O -0.981 6.981 25 O -0.971 6.971 26 C -0.069 4.069 27 C -0.070 4.070 28 H 0.077 0.923 29 H 0.205 0.795 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.171 0.829 43 H 0.179 0.821 44 H 0.050 0.950 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.510 -23.264 9.187 25.138 hybrid contribution 0.710 -0.874 -0.149 1.136 sum 3.220 -24.138 9.038 25.975 Atomic orbital electron populations 1.70780 1.08066 1.31188 1.45628 1.27303 0.96482 1.06495 0.91703 0.82972 0.74109 0.71243 0.77960 1.21216 1.19507 1.19388 1.22847 0.94671 0.93937 1.58425 0.93122 1.19356 0.88304 0.91453 0.84562 0.96373 1.86419 1.39385 1.96620 1.16338 1.22497 0.95513 0.89308 0.99700 1.62113 1.27993 1.01992 1.34687 1.22053 0.97023 0.97153 0.90412 1.22205 0.93888 0.89312 1.01507 1.62278 1.26717 1.01268 1.34571 1.21832 0.96553 0.93608 0.93151 1.30427 1.11272 1.20894 1.03740 0.83999 1.21973 0.98447 1.03181 0.90061 1.22371 1.03534 0.91071 0.99090 1.30446 1.14166 1.07926 1.16495 1.09361 0.75947 0.78811 0.79365 1.93566 1.31873 1.85389 1.87272 1.93542 1.83630 1.66673 1.53300 1.22209 0.97218 0.97614 0.89825 1.22201 0.93951 0.89689 1.01193 0.92269 0.79504 0.91253 0.95792 0.94389 0.92853 0.95574 0.88079 0.94715 0.87091 0.88189 0.88786 0.89096 0.85978 0.82859 0.82061 0.94950 0.87520 0.89910 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.32 13.53 21.44 0.29 -57.03 16 2 C -0.02 -1.02 5.40 84.65 0.46 -0.56 16 3 Si 1.12 49.53 29.90 68.60 2.05 51.58 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.66 -36.66 8.76 25.60 0.22 -36.44 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.22 11.24 2.31 29.85 0.07 11.31 16 10 H 0.02 1.04 6.36 -2.39 -0.02 1.02 16 11 O -0.58 -30.36 11.88 -148.98 -1.77 -32.13 16 12 C 0.06 2.36 4.56 86.30 0.39 2.76 16 13 N -0.54 -19.05 4.58 -895.72 -4.10 -23.15 16 14 C 0.06 2.06 5.41 86.31 0.47 2.52 16 15 C 0.06 1.55 5.14 86.31 0.44 1.99 16 16 N -0.52 -11.28 4.55 -895.72 -4.08 -15.35 16 17 C 0.08 1.36 3.90 86.31 0.34 1.70 16 18 C -0.55 -7.70 2.71 30.99 0.08 -7.61 16 19 H 0.14 2.08 6.19 -2.39 -0.01 2.07 16 20 C -0.10 -0.85 5.69 31.29 0.18 -0.67 16 21 C -0.12 -0.57 6.48 31.59 0.20 -0.37 16 22 C -0.56 -3.08 7.31 72.68 0.53 -2.55 16 23 S 2.38 36.76 5.95 -56.49 -0.34 36.42 16 24 O -0.98 -23.85 18.14 -127.49 -2.31 -26.17 16 25 O -0.97 -21.63 17.24 -127.49 -2.20 -23.82 16 26 C 0.06 1.34 5.62 86.31 0.48 1.83 16 27 C 0.06 1.56 5.61 86.31 0.48 2.04 16 28 H 0.27 17.20 6.47 -92.70 -0.60 16.60 16 29 H 0.36 16.96 9.04 -74.06 -0.67 16.29 16 30 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 31 H 0.02 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 2.10 6.34 -2.39 -0.02 2.08 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 2.17 5.97 -2.39 -0.01 2.16 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 1.57 8.01 -2.39 -0.02 1.55 16 38 H 0.10 0.70 7.81 -2.39 -0.02 0.68 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.16 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 45 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.08 2.11 8.07 -2.39 -0.02 2.09 16 47 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -79.62 373.71 -7.63 -87.25 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.46 Total: 26.45 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.36 Total: -24.05 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -7.89 Total: -95.54 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -6.28 Total: -82.12 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Atomic # 16 Polarization: 36.76 SS G_CDS: -0.34 Total: 36.42 kcal Total: -79.62 -7.63 -87.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364782335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.830 kcal (2) G-P(sol) polarization free energy of solvation -79.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds