Wall clock time and date at job start Sat Apr 11 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00600 * 2 1 4 4 O 1.20826 * 119.99631 * 359.97438 * 3 2 1 5 5 C 1.50688 * 120.00291 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.67126 * 59.30102 * 5 3 2 7 7 C 1.54886 * 110.91970 * 295.95276 * 5 3 2 8 8 C 1.54261 * 104.19786 * 203.66806 * 7 5 3 9 9 C 1.53870 * 106.59991 * 23.61079 * 8 7 5 10 10 H 1.08998 * 110.03319 * 240.71195 * 9 8 7 11 11 N 1.46502 * 110.03433 * 119.28377 * 9 8 7 12 12 C 1.34777 * 120.00044 * 87.83030 * 11 9 8 13 13 O 1.21576 * 119.99789 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99852 * 180.02562 * 12 11 9 15 15 C 1.39245 * 119.99695 * 175.71315 * 14 12 11 16 16 C 1.39481 * 119.82840 * 215.02244 * 15 14 12 17 17 C 1.36379 * 120.16627 * 179.76069 * 16 15 14 18 18 C 1.40870 * 119.82369 * 0.51446 * 17 16 15 19 19 C 1.41159 * 120.15995 * 179.71808 * 18 17 16 20 20 H 1.08001 * 119.99940 * 214.79882 * 19 18 17 21 21 C 1.39895 * 119.99951 * 34.80563 * 19 18 17 22 22 N 1.30876 * 120.00410 * 355.55171 * 21 19 18 23 23 Si 1.86806 * 119.99913 * 175.55713 * 21 19 18 24 24 H 1.48496 * 109.47162 * 89.99600 * 23 21 19 25 25 H 1.48497 * 109.47014 * 209.99882 * 23 21 19 26 26 H 1.48504 * 109.46899 * 329.99860 * 23 21 19 27 27 C 1.40866 * 119.67555 * 359.73933 * 18 17 16 28 28 C 1.36373 * 119.82933 * 359.97438 * 27 18 17 29 29 C 1.54266 * 106.59670 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.46867 * 59.99805 * 1 2 3 31 31 H 1.08989 * 109.47561 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46901 * 300.00672 * 1 2 3 33 33 H 1.08994 * 110.48736 * 322.34906 * 7 5 3 34 34 H 1.09004 * 110.48350 * 84.98855 * 7 5 3 35 35 H 1.09000 * 110.03487 * 264.32442 * 8 7 5 36 36 H 1.09003 * 110.07537 * 142.92099 * 8 7 5 37 37 H 0.96996 * 120.00081 * 267.83630 * 11 9 8 38 38 H 0.96996 * 120.00114 * 355.72036 * 14 12 11 39 39 H 1.08004 * 119.92028 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.08890 * 180.25119 * 17 16 15 41 41 H 0.96995 * 120.00783 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.08197 * 180.02562 * 27 18 17 43 43 H 1.07991 * 119.91738 * 179.97438 * 28 27 18 44 44 H 1.09004 * 110.48542 * 217.70722 * 29 9 8 45 45 H 1.09004 * 110.48806 * 95.06912 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9782 0.7747 -0.8761 7 6 4.1512 0.6716 1.3018 8 6 5.5324 1.3439 1.4430 9 6 5.4610 2.6644 0.6563 10 1 6.1995 2.6618 -0.1454 11 7 5.6985 3.7972 1.5544 12 6 6.9565 4.2228 1.7842 13 8 7.8941 3.6669 1.2458 14 7 7.1750 5.2646 2.6109 15 6 8.4778 5.6478 2.9186 16 6 8.7756 6.1343 4.1915 17 6 10.0502 6.5070 4.5018 18 6 11.0650 6.4098 3.5295 19 6 12.3855 6.7992 3.8413 20 1 13.0049 7.2605 3.0863 21 6 12.8919 6.5874 5.1280 22 7 12.1153 6.1088 6.0664 23 14 14.6768 6.9878 5.5069 24 1 14.7814 8.3960 5.9665 25 1 15.1719 6.0809 6.5735 26 1 15.4959 6.8048 4.2818 27 6 10.7553 5.9225 2.2446 28 6 9.4773 5.5481 1.9509 29 6 4.0391 2.7481 0.0639 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.5183 0.9176 2.1544 34 1 4.2608 -0.4087 1.2059 35 1 6.3056 0.7005 1.0231 36 1 5.7447 1.5458 2.4929 37 1 4.9504 4.2409 1.9838 38 1 6.4247 5.7473 2.9916 39 1 7.9957 6.2120 4.9346 40 1 10.2802 6.8797 5.4890 41 1 12.4662 5.9623 6.9587 42 1 11.5283 5.8448 1.4944 43 1 9.2383 5.1748 0.9662 44 1 4.0669 3.1836 -0.9349 45 1 3.3875 3.3294 0.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365022697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:48 Heat of formation + Delta-G solvation = -97.670153 kcal Electronic energy + Delta-G solvation = -27264.706667 eV Core-core repulsion = 23246.755027 eV Total energy + Delta-G solvation = -4017.951640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05998 -40.01696 -38.36033 -37.19193 -36.66154 -34.36727 -33.69235 -32.72901 -29.75535 -29.49097 -29.05136 -28.41135 -27.31047 -24.78225 -23.02129 -21.90377 -21.06338 -20.55396 -20.29014 -19.91361 -18.10781 -17.95463 -17.23619 -17.14867 -16.86810 -16.37251 -15.91575 -15.21993 -14.96450 -14.69715 -14.32032 -14.03280 -13.84944 -13.68095 -13.39983 -12.98779 -12.72922 -12.65673 -12.41277 -12.20783 -12.06932 -11.83520 -11.63900 -11.58231 -11.31091 -11.29081 -11.19739 -11.11448 -10.95350 -10.86731 -10.68254 -10.67063 -10.04624 -9.50046 -9.41761 -9.20129 -8.90717 -8.82667 -7.48824 -6.78490 -6.56499 -4.28682 1.80830 2.27927 2.70957 3.04723 3.12167 3.12665 3.16942 3.21826 3.70460 4.00121 4.02306 4.17144 4.43037 4.66194 4.68820 4.75083 4.76349 4.77178 4.97583 5.05544 5.12411 5.13451 5.18053 5.28081 5.51345 5.69529 5.71430 5.83090 5.96589 5.97933 6.05974 6.24034 6.49539 6.65845 6.81779 6.88468 7.09892 7.20564 7.31942 7.34799 7.45812 7.70474 7.91432 8.02277 8.14793 8.36248 8.51417 8.69203 8.97825 8.98515 9.14068 10.34761 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038745 B = 0.001826 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.492153 B =15333.535578 C =15371.586913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.506 6.506 5 C -0.088 4.088 6 H 0.119 0.881 7 C -0.108 4.108 8 C -0.137 4.137 9 C 0.163 3.837 10 H 0.097 0.903 11 N -0.747 5.747 12 C 0.695 3.305 13 O -0.577 6.577 14 N -0.668 5.668 15 C 0.024 3.976 16 C -0.124 4.124 17 C -0.140 4.140 18 C 0.097 3.903 19 C -0.462 4.462 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.814 5.814 23 Si 0.914 3.086 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.203 4.203 28 C -0.087 4.087 29 C -0.114 4.114 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.392 0.608 38 H 0.391 0.609 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.277 0.723 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.483 -10.334 -7.958 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.393 6.393 5 C -0.107 4.107 6 H 0.137 0.863 7 C -0.146 4.146 8 C -0.176 4.176 9 C 0.057 3.943 10 H 0.115 0.885 11 N -0.403 5.403 12 C 0.396 3.604 13 O -0.454 6.454 14 N -0.313 5.313 15 C -0.068 4.068 16 C -0.145 4.145 17 C -0.160 4.160 18 C 0.094 3.906 19 C -0.493 4.493 20 H 0.093 0.907 21 C -0.145 4.145 22 N -0.442 5.442 23 Si 0.739 3.261 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.224 4.224 28 C -0.107 4.107 29 C -0.152 4.152 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.226 0.774 38 H 0.224 0.776 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.824 -10.633 -8.206 23.945 hybrid contribution -0.268 0.469 0.714 0.896 sum -20.092 -10.163 -7.492 23.730 Atomic orbital electron populations 1.23284 0.76312 1.03768 1.02598 1.86523 1.23436 1.33476 1.83986 1.23675 0.91861 0.81282 0.71919 1.90678 1.67155 1.36380 1.45110 1.22017 0.86767 0.99456 1.02504 0.86267 1.22339 0.96682 1.00733 0.94855 1.22656 0.96279 0.96492 1.02145 1.21325 0.96077 0.84824 0.92077 0.88483 1.45278 1.06874 1.36317 1.51872 1.16034 0.83052 0.80520 0.80820 1.90903 1.41160 1.59637 1.53676 1.42131 1.07856 1.31710 1.49652 1.17076 0.82801 1.12334 0.94613 1.20297 0.97201 1.03997 0.92967 1.21172 0.90201 1.03390 1.01247 1.17719 0.93130 0.88936 0.90780 1.19476 0.97867 1.35898 0.96073 0.90695 1.25858 0.99951 0.93025 0.95677 1.69762 1.36555 1.34890 1.02973 0.86214 0.82195 0.78812 0.78831 1.19594 1.20367 1.18767 1.20804 0.95302 1.07642 0.98612 1.20422 0.92921 0.99775 0.97588 1.22585 0.95679 0.93921 1.02991 0.91872 0.88025 0.91857 0.91107 0.90026 0.90353 0.90389 0.77411 0.77559 0.89199 0.85076 0.91247 0.88665 0.87326 0.89872 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.91 10.56 -39.26 -0.41 -3.33 16 3 C 0.47 4.28 7.27 36.00 0.26 4.54 16 4 O -0.51 -5.94 15.50 -18.75 -0.29 -6.23 16 5 C -0.09 -0.65 3.39 -89.80 -0.30 -0.96 16 6 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.11 -0.80 6.27 -25.08 -0.16 -0.96 16 8 C -0.14 -1.33 6.59 -25.62 -0.17 -1.50 16 9 C 0.16 1.72 3.24 -66.81 -0.22 1.50 16 10 H 0.10 1.19 7.56 -51.93 -0.39 0.79 16 11 N -0.75 -9.09 4.99 -57.58 -0.29 -9.37 16 12 C 0.69 12.11 8.39 -86.92 -0.73 11.38 16 13 O -0.58 -12.50 13.41 5.30 0.07 -12.43 16 14 N -0.67 -11.77 5.31 -14.10 -0.07 -11.84 16 15 C 0.02 0.55 6.31 -83.57 -0.53 0.02 16 16 C -0.12 -2.85 9.90 -39.79 -0.39 -3.25 16 17 C -0.14 -3.64 8.62 -39.26 -0.34 -3.97 16 18 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 19 C -0.46 -12.49 9.02 -37.85 -0.34 -12.83 16 20 H 0.07 1.95 7.85 -52.49 -0.41 1.53 16 21 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 22 N -0.81 -21.44 10.60 55.54 0.59 -20.85 16 23 Si 0.91 19.25 29.56 -169.99 -5.03 14.22 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 27 C -0.20 -5.23 9.74 -39.26 -0.38 -5.61 16 28 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 29 C -0.11 -0.95 5.58 -25.09 -0.14 -1.09 16 30 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.10 0.31 8.14 -51.94 -0.42 -0.12 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 37 H 0.39 3.70 8.38 -40.82 -0.34 3.35 16 38 H 0.39 5.39 8.83 -40.82 -0.36 5.03 16 39 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 41 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 42 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 43 H 0.11 2.62 6.22 -52.49 -0.33 2.30 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.77 7.08 -51.93 -0.37 0.40 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -33.02 375.12 -9.47 -42.50 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.29 Total: 11.87 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.40 Total: -10.20 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.23 Total: -42.06 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.63 Total: -21.98 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.02 -9.47 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365022697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.174 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds