Wall clock time and date at job start Sat Apr 11 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00600 * 2 1 4 4 O 1.20826 * 119.99631 * 359.97438 * 3 2 1 5 5 C 1.50688 * 120.00291 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.67126 * 59.30102 * 5 3 2 7 7 C 1.54886 * 110.91970 * 295.95276 * 5 3 2 8 8 C 1.54261 * 104.19786 * 203.66806 * 7 5 3 9 9 C 1.53870 * 106.59991 * 23.61079 * 8 7 5 10 10 H 1.08998 * 110.03319 * 240.71195 * 9 8 7 11 11 N 1.46502 * 110.03433 * 119.28377 * 9 8 7 12 12 C 1.34777 * 120.00044 * 87.83030 * 11 9 8 13 13 O 1.21576 * 119.99789 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99852 * 180.02562 * 12 11 9 15 15 C 1.39245 * 119.99695 * 175.71315 * 14 12 11 16 16 C 1.39481 * 119.82840 * 215.02244 * 15 14 12 17 17 C 1.36379 * 120.16627 * 179.76069 * 16 15 14 18 18 C 1.40870 * 119.82369 * 0.51446 * 17 16 15 19 19 C 1.41159 * 120.15995 * 179.71808 * 18 17 16 20 20 H 1.08001 * 119.99940 * 214.79882 * 19 18 17 21 21 C 1.39895 * 119.99951 * 34.80563 * 19 18 17 22 22 N 1.30876 * 120.00410 * 355.55171 * 21 19 18 23 23 Si 1.86806 * 119.99913 * 175.55713 * 21 19 18 24 24 H 1.48496 * 109.47162 * 89.99600 * 23 21 19 25 25 H 1.48497 * 109.47014 * 209.99882 * 23 21 19 26 26 H 1.48504 * 109.46899 * 329.99860 * 23 21 19 27 27 C 1.40866 * 119.67555 * 359.73933 * 18 17 16 28 28 C 1.36373 * 119.82933 * 359.97438 * 27 18 17 29 29 C 1.54266 * 106.59670 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.46867 * 59.99805 * 1 2 3 31 31 H 1.08989 * 109.47561 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46901 * 300.00672 * 1 2 3 33 33 H 1.08994 * 110.48736 * 322.34906 * 7 5 3 34 34 H 1.09004 * 110.48350 * 84.98855 * 7 5 3 35 35 H 1.09000 * 110.03487 * 264.32442 * 8 7 5 36 36 H 1.09003 * 110.07537 * 142.92099 * 8 7 5 37 37 H 0.96996 * 120.00081 * 267.83630 * 11 9 8 38 38 H 0.96996 * 120.00114 * 355.72036 * 14 12 11 39 39 H 1.08004 * 119.92028 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.08890 * 180.25119 * 17 16 15 41 41 H 0.96995 * 120.00783 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.08197 * 180.02562 * 27 18 17 43 43 H 1.07991 * 119.91738 * 179.97438 * 28 27 18 44 44 H 1.09004 * 110.48542 * 217.70722 * 29 9 8 45 45 H 1.09004 * 110.48806 * 95.06912 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9782 0.7747 -0.8761 7 6 4.1512 0.6716 1.3018 8 6 5.5324 1.3439 1.4430 9 6 5.4610 2.6644 0.6563 10 1 6.1995 2.6618 -0.1454 11 7 5.6985 3.7972 1.5544 12 6 6.9565 4.2228 1.7842 13 8 7.8941 3.6669 1.2458 14 7 7.1750 5.2646 2.6109 15 6 8.4778 5.6478 2.9186 16 6 8.7756 6.1343 4.1915 17 6 10.0502 6.5070 4.5018 18 6 11.0650 6.4098 3.5295 19 6 12.3855 6.7992 3.8413 20 1 13.0049 7.2605 3.0863 21 6 12.8919 6.5874 5.1280 22 7 12.1153 6.1088 6.0664 23 14 14.6768 6.9878 5.5069 24 1 14.7814 8.3960 5.9665 25 1 15.1719 6.0809 6.5735 26 1 15.4959 6.8048 4.2818 27 6 10.7553 5.9225 2.2446 28 6 9.4773 5.5481 1.9509 29 6 4.0391 2.7481 0.0639 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.5183 0.9176 2.1544 34 1 4.2608 -0.4087 1.2059 35 1 6.3056 0.7005 1.0231 36 1 5.7447 1.5458 2.4929 37 1 4.9504 4.2409 1.9838 38 1 6.4247 5.7473 2.9916 39 1 7.9957 6.2120 4.9346 40 1 10.2802 6.8797 5.4890 41 1 12.4662 5.9623 6.9587 42 1 11.5283 5.8448 1.4944 43 1 9.2383 5.1748 0.9662 44 1 4.0669 3.1836 -0.9349 45 1 3.3875 3.3294 0.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365022697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:47 Heat of formation + Delta-G solvation = -117.683555 kcal Electronic energy + Delta-G solvation = -27265.574513 eV Core-core repulsion = 23246.755027 eV Total energy + Delta-G solvation = -4018.819486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81699 -41.34331 -39.58369 -38.61756 -37.43168 -36.09414 -34.99683 -34.36022 -31.46084 -30.85478 -30.24004 -29.36685 -28.05006 -26.57241 -23.80225 -23.44878 -22.79485 -21.83940 -21.22814 -21.00734 -19.41897 -19.09821 -18.83831 -18.09186 -17.75580 -17.43351 -16.99292 -16.79116 -16.12065 -16.02687 -15.70779 -15.48032 -14.83684 -14.66841 -14.53450 -14.43926 -14.07043 -13.97172 -13.59062 -13.28455 -13.27176 -13.11330 -13.03115 -12.79991 -12.72655 -12.58687 -12.45654 -12.20799 -11.98668 -11.80627 -11.76966 -11.64590 -11.38412 -11.37255 -11.20144 -10.97818 -10.62337 -10.04750 -9.43031 -8.65999 -8.47146 -6.29484 0.87571 1.12590 1.17731 1.40766 1.48180 1.55281 1.63869 1.88251 2.23413 2.27289 2.84166 3.26815 3.42619 3.48555 3.71739 3.86444 4.07444 4.24696 4.31399 4.33485 4.36696 4.41947 4.42340 4.45264 4.53388 4.57761 4.73204 4.86871 4.95353 5.05161 5.08539 5.16040 5.18138 5.19947 5.25844 5.36348 5.37460 5.47518 5.64696 5.72554 5.85580 6.06815 6.14893 6.28815 6.43310 6.69000 6.71637 7.00062 7.04451 7.18165 7.69390 8.45522 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038745 B = 0.001826 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.492153 B =15333.535578 C =15371.586913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.083 4.083 6 H 0.141 0.859 7 C -0.097 4.097 8 C -0.134 4.134 9 C 0.159 3.841 10 H 0.081 0.919 11 N -0.724 5.724 12 C 0.694 3.306 13 O -0.620 6.620 14 N -0.661 5.661 15 C 0.043 3.957 16 C -0.122 4.122 17 C -0.157 4.157 18 C 0.064 3.936 19 C -0.499 4.499 20 H 0.071 0.929 21 C 0.027 3.973 22 N -0.843 5.843 23 Si 0.988 3.012 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.263 1.263 27 C -0.218 4.218 28 C -0.098 4.098 29 C -0.104 4.104 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.409 0.591 38 H 0.413 0.587 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.158 -11.333 -7.891 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.102 4.102 6 H 0.159 0.841 7 C -0.135 4.135 8 C -0.173 4.173 9 C 0.054 3.946 10 H 0.099 0.901 11 N -0.381 5.381 12 C 0.395 3.605 13 O -0.500 6.500 14 N -0.309 5.309 15 C -0.051 4.051 16 C -0.142 4.142 17 C -0.177 4.177 18 C 0.061 3.939 19 C -0.530 4.530 20 H 0.090 0.910 21 C -0.184 4.184 22 N -0.471 5.471 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.187 1.187 27 C -0.238 4.238 28 C -0.118 4.118 29 C -0.142 4.142 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.246 0.754 38 H 0.250 0.750 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.599 -11.644 -8.141 25.853 hybrid contribution 0.037 0.688 0.616 0.924 sum -21.563 -10.957 -7.525 25.330 Atomic orbital electron populations 1.23541 0.74971 1.05652 1.02460 1.86515 1.24802 1.32836 1.83531 1.23877 0.92272 0.81113 0.70990 1.90670 1.67897 1.37352 1.46694 1.22031 0.85957 0.98792 1.03416 0.84140 1.22262 0.94904 1.01486 0.94848 1.22581 0.97799 0.96104 1.00802 1.21474 0.97068 0.84557 0.91511 0.90124 1.45110 1.05483 1.36213 1.51294 1.16182 0.84055 0.80123 0.80164 1.90882 1.43064 1.60879 1.55210 1.41919 1.06803 1.32259 1.49898 1.17089 0.84368 1.09874 0.93764 1.20532 0.96984 1.02875 0.93835 1.21152 0.91356 1.04561 1.00633 1.18035 0.93918 0.90246 0.91674 1.19704 0.98362 1.37732 0.97212 0.91035 1.26717 1.04401 0.92352 0.94945 1.69826 1.38472 1.35355 1.03484 0.85116 0.76347 0.79076 0.78582 1.18440 1.19436 1.18734 1.20920 0.96173 1.08245 0.98457 1.20528 0.93065 1.00057 0.98190 1.22482 0.93824 0.94897 1.03040 0.91968 0.85202 0.92096 0.91012 0.88355 0.90667 0.91961 0.75382 0.74980 0.85851 0.86360 0.90561 0.88699 0.87349 0.89249 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.04 10.56 -51.42 -0.54 -5.58 16 3 C 0.47 7.63 7.27 71.23 0.52 8.14 16 4 O -0.54 -11.75 15.50 21.96 0.34 -11.41 16 5 C -0.08 -1.02 3.39 -10.26 -0.03 -1.06 16 6 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 7 C -0.10 -1.20 6.27 31.67 0.20 -1.00 16 8 C -0.13 -2.41 6.59 31.32 0.21 -2.20 16 9 C 0.16 3.13 3.24 45.71 0.15 3.28 16 10 H 0.08 1.91 7.56 -2.39 -0.02 1.89 16 11 N -0.72 -16.37 4.99 -454.36 -2.27 -18.64 16 12 C 0.69 23.39 8.39 179.05 1.50 24.89 16 13 O -0.62 -26.81 13.41 -3.95 -0.05 -26.86 16 14 N -0.66 -22.18 5.31 -316.79 -1.68 -23.86 16 15 C 0.04 1.91 6.31 38.56 0.24 2.15 16 16 C -0.12 -5.52 9.90 22.14 0.22 -5.31 16 17 C -0.16 -8.30 8.62 22.48 0.19 -8.11 16 18 C 0.06 3.58 5.55 -21.27 -0.12 3.46 16 19 C -0.50 -27.93 9.02 23.39 0.21 -27.72 16 20 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 21 C 0.03 1.42 5.42 85.24 0.46 1.89 16 22 N -0.84 -45.16 10.60 21.82 0.23 -44.93 16 23 Si 0.99 39.77 29.56 68.60 2.03 41.80 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 C -0.22 -11.58 9.74 22.48 0.22 -11.36 16 28 C -0.10 -4.83 8.61 22.13 0.19 -4.64 16 29 C -0.10 -1.53 5.58 31.66 0.18 -1.35 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.58 16 31 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.60 8.13 -2.38 -0.02 0.58 16 33 H 0.07 0.90 8.05 -2.39 -0.02 0.88 16 34 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.34 7.92 -2.39 -0.02 1.32 16 37 H 0.41 6.67 8.38 -92.71 -0.78 5.90 16 38 H 0.41 10.26 8.83 -92.71 -0.82 9.44 16 39 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.12 6.51 6.13 -2.91 -0.02 6.50 16 41 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 42 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.11 5.32 6.22 -2.92 -0.02 5.30 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.32 7.08 -2.38 -0.02 1.30 16 Total: -1.00 -73.50 375.12 3.03 -70.47 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.56 Total: 36.50 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 5.53 Total: -17.50 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -3.72 Total: -87.43 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.26 Total: -43.85 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -73.50 3.03 -70.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365022697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.210 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds