Wall clock time and date at job start Sat Apr 11 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00165 * 2 1 4 4 H 1.48507 * 109.46972 * 269.99857 * 3 2 1 5 5 H 1.48493 * 109.47163 * 29.99812 * 3 2 1 6 6 H 1.48495 * 109.47371 * 150.00058 * 3 2 1 7 7 C 1.37884 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99751 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00193 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.46852 * 180.02562 * 9 7 2 11 11 C 1.38283 * 119.93032 * 90.00143 * 10 9 7 12 12 C 1.38111 * 120.06816 * 179.97438 * 11 10 9 13 13 C 1.38870 * 119.92970 * 0.02562 * 12 11 10 14 14 N 1.39948 * 120.06844 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99759 * 35.09108 * 14 13 12 16 16 O 1.21585 * 120.00495 * 355.37204 * 15 14 13 17 17 N 1.34783 * 119.99875 * 175.37414 * 15 14 13 18 18 C 1.47488 * 125.59051 * 0.04146 * 17 15 14 19 19 C 1.54318 * 107.03211 * 180.98739 * 18 17 15 20 20 C 1.55159 * 103.10445 * 22.24114 * 19 18 17 21 21 H 1.09000 * 111.00096 * 82.48019 * 20 19 18 22 22 N 1.46500 * 111.00498 * 206.29131 * 20 19 18 23 23 C 1.34769 * 120.00060 * 204.99814 * 22 20 19 24 24 N 1.34777 * 120.00052 * 180.02562 * 23 22 20 25 25 O 1.21587 * 120.00206 * 0.02562 * 23 22 20 26 26 C 1.47423 * 125.64792 * 180.02562 * 17 15 14 27 27 C 1.38862 * 119.86003 * 0.25122 * 13 12 11 28 28 C 1.38114 * 119.92967 * 359.49095 * 27 13 12 29 29 H 0.97002 * 120.00161 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47127 * 59.99772 * 9 7 2 31 31 H 1.09002 * 109.46998 * 300.00020 * 9 7 2 32 32 H 1.08002 * 119.96231 * 359.97438 * 11 10 9 33 33 H 1.08001 * 120.03583 * 180.02562 * 12 11 10 34 34 H 0.96992 * 119.99554 * 215.08754 * 14 13 12 35 35 H 1.08998 * 110.03370 * 61.62403 * 18 17 15 36 36 H 1.08997 * 109.96041 * 300.31196 * 18 17 15 37 37 H 1.08994 * 110.72579 * 263.78774 * 19 18 17 38 38 H 1.09007 * 110.71636 * 140.69380 * 19 18 17 39 39 H 0.96999 * 119.99750 * 25.00463 * 22 20 19 40 40 H 0.96999 * 119.99758 * 0.02562 * 24 23 22 41 41 H 0.97004 * 120.00127 * 180.02562 * 24 23 22 42 42 H 1.08993 * 110.37111 * 37.08861 * 26 17 15 43 43 H 1.09003 * 110.45732 * 274.80893 * 26 17 15 44 44 H 1.07999 * 120.03666 * 179.72640 * 27 13 12 45 45 H 1.08004 * 119.96453 * 180.25138 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6150 0.0010 11 6 4.2442 -3.2652 -1.1975 12 6 4.7050 -4.5672 -1.2009 13 6 4.9364 -5.2234 0.0009 14 7 5.4028 -6.5429 0.0008 15 6 6.2604 -6.9543 -0.9540 16 8 6.5635 -6.2056 -1.8627 17 7 6.7822 -8.1960 -0.9015 18 6 6.5006 -9.2021 0.1395 19 6 7.3377 -10.4526 -0.2023 20 6 8.4728 -9.8833 -1.0938 21 1 9.2736 -9.4628 -0.4855 22 7 8.9909 -10.9086 -2.0029 23 6 10.2473 -10.8127 -2.4809 24 7 10.7238 -11.7557 -3.3177 25 8 10.9510 -9.8754 -2.1574 26 6 7.7277 -8.7725 -1.8747 27 6 4.6985 -4.5696 1.2026 28 6 4.2428 -3.2658 1.1993 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8751 -0.6804 -0.8889 32 1 4.0636 -2.7543 -2.1317 33 1 4.8852 -5.0744 -2.1372 34 1 5.1089 -7.1611 0.6879 35 1 5.4402 -9.4540 0.1382 36 1 6.7911 -8.8173 1.1171 37 1 6.7402 -11.1775 -0.7550 38 1 7.7467 -10.9021 0.7027 39 1 8.4296 -11.6565 -2.2608 40 1 10.1623 -12.5032 -3.5761 41 1 11.6282 -11.6869 -3.6615 42 1 8.4303 -8.0127 -2.2168 43 1 7.1900 -9.1997 -2.7211 44 1 4.8733 -5.0788 2.1389 45 1 4.0615 -2.7554 2.1337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365082225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:50 Heat of formation + Delta-G solvation = -24.308597 kcal Electronic energy + Delta-G solvation = -27140.337775 eV Core-core repulsion = 23157.860082 eV Total energy + Delta-G solvation = -3982.477693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93604 -40.21615 -38.80120 -37.60196 -34.89227 -34.70282 -33.95010 -32.88482 -31.20930 -30.49309 -30.24648 -28.83116 -26.87168 -24.30171 -22.70716 -22.33471 -22.23756 -21.37159 -20.45996 -19.78515 -18.92393 -18.54889 -17.69221 -17.11500 -16.72293 -16.54675 -15.70287 -15.49531 -15.23527 -14.84046 -14.74427 -14.44640 -14.16541 -14.02363 -13.91555 -13.35793 -13.19026 -13.15504 -12.82185 -12.41452 -12.32756 -12.28485 -12.09822 -11.64310 -11.43801 -11.42757 -10.83151 -10.78774 -10.45593 -10.27417 -10.19904 -10.12101 -9.85825 -9.67079 -9.49904 -9.28116 -8.93568 -8.54325 -8.27163 -7.34994 -6.03606 -4.02163 1.91982 2.06159 2.12190 2.57839 2.71618 3.13050 3.32742 3.40119 3.43783 3.68670 3.86001 4.05493 4.12729 4.37381 4.45641 4.50629 4.67513 4.78701 5.05830 5.15306 5.28489 5.36077 5.40972 5.45273 5.49506 5.60109 5.73426 5.90805 5.95914 6.02961 6.15293 6.18112 6.18613 6.40487 6.59313 6.66189 6.89728 7.01556 7.01999 7.10221 7.15923 7.40397 7.65341 7.67054 7.76913 7.79940 8.12058 8.47643 8.54247 9.02085 9.57137 11.09345 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.001864 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.685263 B =15019.675124 C =15399.500759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.040 4.040 11 C -0.106 4.106 12 C -0.116 4.116 13 C 0.124 3.876 14 N -0.678 5.678 15 C 0.721 3.279 16 O -0.566 6.566 17 N -0.637 5.637 18 C 0.099 3.901 19 C -0.135 4.135 20 C 0.150 3.850 21 H 0.111 0.889 22 N -0.734 5.734 23 C 0.706 3.294 24 N -0.867 5.867 25 O -0.587 6.587 26 C 0.116 3.884 27 C -0.143 4.143 28 C -0.105 4.105 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.401 0.599 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.399 0.601 40 H 0.397 0.603 41 H 0.416 0.584 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.457 -30.103 -1.125 34.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.041 4.041 11 C -0.124 4.124 12 C -0.136 4.136 13 C 0.031 3.969 14 N -0.325 5.325 15 C 0.424 3.576 16 O -0.442 6.442 17 N -0.377 5.377 18 C -0.025 4.025 19 C -0.174 4.174 20 C 0.043 3.957 21 H 0.129 0.871 22 N -0.390 5.390 23 C 0.404 3.596 24 N -0.435 5.435 25 O -0.464 6.464 26 C -0.009 4.009 27 C -0.164 4.164 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.233 0.767 40 H 0.225 0.775 41 H 0.248 0.752 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.133 0.867 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.005 -28.515 -1.429 33.754 hybrid contribution -0.130 -0.287 -0.051 0.319 sum 17.876 -28.802 -1.480 33.931 Atomic orbital electron populations 1.69899 1.06254 1.26909 1.50914 1.24999 0.94734 0.99015 0.94547 0.86806 0.80409 0.83653 0.78662 1.20177 1.21317 1.18896 1.20955 0.88324 0.94630 1.51006 0.90804 1.18803 0.97370 0.88756 0.97362 1.20295 0.93523 0.98079 0.92180 1.20987 0.99079 0.94030 0.98350 1.21150 0.99658 0.95575 0.97194 1.17322 1.01844 0.83355 0.94364 1.42417 1.47187 1.11792 1.31092 1.15385 0.79064 0.80357 0.82810 1.90961 1.64481 1.53079 1.35643 1.47501 1.49093 1.12408 1.28706 1.22093 1.00079 0.88173 0.92135 1.22895 0.96319 0.97194 1.00963 1.21926 0.96084 0.87587 0.90080 0.87145 1.44887 1.13787 1.28485 1.51837 1.15978 0.81855 0.82679 0.79138 1.42985 1.19886 1.28084 1.52522 1.91026 1.58197 1.33961 1.63244 1.22421 0.91247 0.96051 0.91228 1.20700 1.04805 0.95398 0.95501 1.20821 0.99654 0.93553 0.98372 0.92666 0.95409 0.95828 0.86034 0.85139 0.76421 0.90816 0.90839 0.89759 0.88982 0.76652 0.77534 0.75152 0.89554 0.91393 0.86749 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -14.70 9.65 -34.44 -0.33 -15.03 16 8 H 0.07 2.31 7.98 -52.49 -0.42 1.90 16 9 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 10 C -0.04 -0.88 5.07 -104.59 -0.53 -1.41 16 11 C -0.11 -2.19 9.69 -39.61 -0.38 -2.57 16 12 C -0.12 -2.22 8.70 -39.39 -0.34 -2.56 16 13 C 0.12 2.10 6.30 -83.69 -0.53 1.57 16 14 N -0.68 -9.01 5.29 -14.22 -0.08 -9.09 16 15 C 0.72 10.43 8.33 -86.92 -0.72 9.71 16 16 O -0.57 -10.66 14.03 5.29 0.07 -10.58 16 17 N -0.64 -6.43 3.34 -175.88 -0.59 -7.02 16 18 C 0.10 0.54 6.19 -2.81 -0.02 0.52 16 19 C -0.14 -0.45 6.58 -24.90 -0.16 -0.61 16 20 C 0.15 0.95 3.42 -65.79 -0.23 0.72 16 21 H 0.11 0.93 7.54 -51.93 -0.39 0.54 16 22 N -0.73 -3.44 5.20 -56.59 -0.29 -3.74 16 23 C 0.71 5.30 8.84 -86.92 -0.77 4.54 16 24 N -0.87 -2.82 8.88 27.63 0.25 -2.58 16 25 O -0.59 -7.60 16.82 5.29 0.09 -7.51 16 26 C 0.12 1.08 6.60 -2.54 -0.02 1.06 16 27 C -0.14 -2.36 9.97 -39.40 -0.39 -2.76 16 28 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 31 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 32 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.13 2.54 6.22 -52.49 -0.33 2.21 16 34 H 0.40 3.84 7.81 -40.82 -0.32 3.53 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.15 8.00 -51.93 -0.42 -0.27 16 38 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 39 H 0.40 0.54 8.58 -40.82 -0.35 0.19 16 40 H 0.40 -0.04 8.84 -40.82 -0.36 -0.40 16 41 H 0.42 1.19 8.93 -40.82 -0.36 0.82 16 42 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -39.21 376.07 -10.06 -49.27 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.25 Total: 2.68 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -5.03 Total: -7.10 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.06 Total: -49.48 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.16 Total: -18.09 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.21 -10.06 -49.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal (2) G-P(sol) polarization free energy of solvation -39.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds