Wall clock time and date at job start Sat Apr 11 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00165 * 2 1 4 4 H 1.48507 * 109.46972 * 269.99857 * 3 2 1 5 5 H 1.48493 * 109.47163 * 29.99812 * 3 2 1 6 6 H 1.48495 * 109.47371 * 150.00058 * 3 2 1 7 7 C 1.37884 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99751 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00193 * 180.02562 * 7 2 1 10 10 C 1.50704 * 109.46852 * 180.02562 * 9 7 2 11 11 C 1.38283 * 119.93032 * 90.00143 * 10 9 7 12 12 C 1.38111 * 120.06816 * 179.97438 * 11 10 9 13 13 C 1.38870 * 119.92970 * 0.02562 * 12 11 10 14 14 N 1.39948 * 120.06844 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99759 * 35.09108 * 14 13 12 16 16 O 1.21585 * 120.00495 * 355.37204 * 15 14 13 17 17 N 1.34783 * 119.99875 * 175.37414 * 15 14 13 18 18 C 1.47488 * 125.59051 * 0.04146 * 17 15 14 19 19 C 1.54318 * 107.03211 * 180.98739 * 18 17 15 20 20 C 1.55159 * 103.10445 * 22.24114 * 19 18 17 21 21 H 1.09000 * 111.00096 * 82.48019 * 20 19 18 22 22 N 1.46500 * 111.00498 * 206.29131 * 20 19 18 23 23 C 1.34769 * 120.00060 * 204.99814 * 22 20 19 24 24 N 1.34777 * 120.00052 * 180.02562 * 23 22 20 25 25 O 1.21587 * 120.00206 * 0.02562 * 23 22 20 26 26 C 1.47423 * 125.64792 * 180.02562 * 17 15 14 27 27 C 1.38862 * 119.86003 * 0.25122 * 13 12 11 28 28 C 1.38114 * 119.92967 * 359.49095 * 27 13 12 29 29 H 0.97002 * 120.00161 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47127 * 59.99772 * 9 7 2 31 31 H 1.09002 * 109.46998 * 300.00020 * 9 7 2 32 32 H 1.08002 * 119.96231 * 359.97438 * 11 10 9 33 33 H 1.08001 * 120.03583 * 180.02562 * 12 11 10 34 34 H 0.96992 * 119.99554 * 215.08754 * 14 13 12 35 35 H 1.08998 * 110.03370 * 61.62403 * 18 17 15 36 36 H 1.08997 * 109.96041 * 300.31196 * 18 17 15 37 37 H 1.08994 * 110.72579 * 263.78774 * 19 18 17 38 38 H 1.09007 * 110.71636 * 140.69380 * 19 18 17 39 39 H 0.96999 * 119.99750 * 25.00463 * 22 20 19 40 40 H 0.96999 * 119.99758 * 0.02562 * 24 23 22 41 41 H 0.97004 * 120.00127 * 180.02562 * 24 23 22 42 42 H 1.08993 * 110.37111 * 37.08861 * 26 17 15 43 43 H 1.09003 * 110.45732 * 274.80893 * 26 17 15 44 44 H 1.07999 * 120.03666 * 179.72640 * 27 13 12 45 45 H 1.08004 * 119.96453 * 180.25138 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6150 0.0010 11 6 4.2442 -3.2652 -1.1975 12 6 4.7050 -4.5672 -1.2009 13 6 4.9364 -5.2234 0.0009 14 7 5.4028 -6.5429 0.0008 15 6 6.2604 -6.9543 -0.9540 16 8 6.5635 -6.2056 -1.8627 17 7 6.7822 -8.1960 -0.9015 18 6 6.5006 -9.2021 0.1395 19 6 7.3377 -10.4526 -0.2023 20 6 8.4728 -9.8833 -1.0938 21 1 9.2736 -9.4628 -0.4855 22 7 8.9909 -10.9086 -2.0029 23 6 10.2473 -10.8127 -2.4809 24 7 10.7238 -11.7557 -3.3177 25 8 10.9510 -9.8754 -2.1574 26 6 7.7277 -8.7725 -1.8747 27 6 4.6985 -4.5696 1.2026 28 6 4.2428 -3.2658 1.1993 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8751 -0.6804 -0.8889 32 1 4.0636 -2.7543 -2.1317 33 1 4.8852 -5.0744 -2.1372 34 1 5.1089 -7.1611 0.6879 35 1 5.4402 -9.4540 0.1382 36 1 6.7911 -8.8173 1.1171 37 1 6.7402 -11.1775 -0.7550 38 1 7.7467 -10.9021 0.7027 39 1 8.4296 -11.6565 -2.2608 40 1 10.1623 -12.5032 -3.5761 41 1 11.6282 -11.6869 -3.6615 42 1 8.4303 -8.0127 -2.2168 43 1 7.1900 -9.1997 -2.7211 44 1 4.8733 -5.0788 2.1389 45 1 4.0615 -2.7554 2.1337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365082225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:50 Heat of formation + Delta-G solvation = -56.042907 kcal Electronic energy + Delta-G solvation = -27141.713878 eV Core-core repulsion = 23157.860082 eV Total energy + Delta-G solvation = -3983.853796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87884 -40.98536 -39.95924 -38.59678 -36.29509 -35.43975 -34.91367 -34.40609 -32.63401 -31.78163 -31.37706 -29.63826 -28.43945 -25.37421 -24.24299 -23.77467 -22.75074 -22.12511 -21.76551 -20.94835 -19.60860 -19.30807 -18.94757 -18.41964 -18.05386 -17.26156 -16.79534 -16.53308 -16.36161 -16.03516 -15.93805 -15.53509 -15.21501 -15.09153 -14.77581 -14.52705 -14.35557 -14.25017 -14.17113 -13.95209 -13.78313 -13.49349 -13.19431 -12.79573 -12.64112 -12.50335 -12.24781 -11.87547 -11.86006 -11.80650 -11.63800 -11.51106 -11.27573 -10.94338 -10.77246 -10.73791 -10.16067 -9.76985 -9.75614 -8.80215 -8.28318 -6.32821 0.46898 0.58164 1.27287 1.38069 1.38661 1.51221 1.96163 1.99500 2.13171 2.36666 2.85090 2.99097 3.05917 3.44327 3.55551 3.69120 4.01444 4.05367 4.16117 4.19715 4.27917 4.32732 4.54144 4.60682 4.64867 4.70182 4.73240 4.78215 4.93378 5.05779 5.08232 5.09004 5.14242 5.27947 5.40748 5.44333 5.49435 5.57307 5.64323 5.88410 5.92019 6.01570 6.03615 6.17635 6.31140 6.73009 6.79975 7.09611 7.30330 7.38941 7.64673 8.87998 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.001864 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.685263 B =15019.675124 C =15399.500759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.021 3.979 10 C -0.075 4.075 11 C -0.120 4.120 12 C -0.128 4.128 13 C 0.136 3.864 14 N -0.663 5.663 15 C 0.713 3.287 16 O -0.619 6.619 17 N -0.631 5.631 18 C 0.087 3.913 19 C -0.116 4.116 20 C 0.157 3.843 21 H 0.087 0.913 22 N -0.716 5.716 23 C 0.697 3.303 24 N -0.846 5.846 25 O -0.648 6.648 26 C 0.113 3.887 27 C -0.129 4.129 28 C -0.110 4.110 29 H 0.267 0.733 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.423 0.577 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.419 0.581 40 H 0.416 0.584 41 H 0.420 0.580 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.161 0.839 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.577 -32.888 0.520 37.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.169 1.169 7 C -0.556 4.556 8 H 0.048 0.952 9 C -0.016 4.016 10 C -0.076 4.076 11 C -0.139 4.139 12 C -0.148 4.148 13 C 0.042 3.958 14 N -0.312 5.312 15 C 0.416 3.584 16 O -0.499 6.499 17 N -0.369 5.369 18 C -0.034 4.034 19 C -0.154 4.154 20 C 0.049 3.951 21 H 0.105 0.895 22 N -0.373 5.373 23 C 0.395 3.605 24 N -0.415 5.415 25 O -0.530 6.530 26 C -0.012 4.012 27 C -0.149 4.149 28 C -0.129 4.129 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.262 0.738 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.258 0.742 40 H 0.247 0.753 41 H 0.252 0.748 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.178 0.822 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.109 -31.459 0.227 36.808 hybrid contribution -0.462 0.344 -0.616 0.844 sum 18.647 -31.114 -0.389 36.276 Atomic orbital electron populations 1.70049 1.08205 1.28199 1.52412 1.25953 0.95606 1.03255 0.94040 0.85675 0.79619 0.78314 0.79186 1.19451 1.20609 1.16864 1.21170 0.90732 0.93067 1.50613 0.95177 1.18648 0.94392 0.91082 0.97491 1.20189 0.96369 0.97326 0.93731 1.20971 1.00075 0.94924 0.97936 1.21141 1.00316 0.95202 0.98159 1.17408 0.99973 0.84689 0.93757 1.42173 1.46739 1.10767 1.31498 1.15615 0.79206 0.81333 0.82281 1.90930 1.66167 1.55103 1.37668 1.47493 1.47922 1.11685 1.29770 1.22529 1.01962 0.87703 0.91214 1.22903 0.94607 0.96498 1.01434 1.21718 0.96093 0.87327 0.89946 0.89516 1.44651 1.13109 1.28491 1.51075 1.16289 0.82257 0.82531 0.79406 1.42798 1.20256 1.27571 1.50896 1.90990 1.59940 1.36587 1.65464 1.22481 0.90745 0.95898 0.92098 1.21024 1.02652 0.94225 0.97004 1.21024 0.99369 0.94801 0.97709 0.92384 0.94617 0.95801 0.86907 0.85945 0.73827 0.88627 0.89460 0.87112 0.86601 0.74226 0.75259 0.74755 0.93791 0.90536 0.82185 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 7 C -0.52 -30.78 9.65 25.60 0.25 -30.53 16 8 H 0.03 1.99 7.98 -2.91 -0.02 1.96 16 9 C 0.02 1.05 4.17 29.10 0.12 1.17 16 10 C -0.08 -3.35 5.07 -19.84 -0.10 -3.45 16 11 C -0.12 -5.18 9.69 22.25 0.22 -4.97 16 12 C -0.13 -5.01 8.70 22.39 0.19 -4.81 16 13 C 0.14 4.44 6.30 38.15 0.24 4.68 16 14 N -0.66 -16.23 5.29 -317.18 -1.68 -17.91 16 15 C 0.71 20.15 8.33 179.05 1.49 21.65 16 16 O -0.62 -24.04 14.03 -3.99 -0.06 -24.10 16 17 N -0.63 -11.80 3.34 -828.64 -2.77 -14.56 16 18 C 0.09 0.62 6.19 86.64 0.54 1.16 16 19 C -0.12 -0.27 6.58 31.78 0.21 -0.06 16 20 C 0.16 1.71 3.42 46.38 0.16 1.87 16 21 H 0.09 1.43 7.54 -2.39 -0.02 1.42 16 22 N -0.72 -5.25 5.20 -451.23 -2.35 -7.60 16 23 C 0.70 9.89 8.84 179.06 1.58 11.48 16 24 N -0.85 -4.12 8.88 -184.75 -1.64 -5.76 16 25 O -0.65 -17.28 16.82 -3.99 -0.07 -17.35 16 26 C 0.11 2.07 6.60 86.85 0.57 2.64 16 27 C -0.13 -3.92 9.97 22.39 0.22 -3.69 16 28 C -0.11 -4.14 9.69 22.25 0.22 -3.92 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.04 1.69 7.14 -2.39 -0.02 1.68 16 31 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 32 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.12 4.98 6.22 -2.91 -0.02 4.96 16 34 H 0.42 6.54 7.81 -92.71 -0.72 5.81 16 35 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.11 -0.24 8.00 -2.39 -0.02 -0.26 16 38 H 0.12 -0.13 8.14 -2.38 -0.02 -0.15 16 39 H 0.42 -0.33 8.58 -92.71 -0.80 -1.13 16 40 H 0.42 -1.19 8.84 -92.71 -0.82 -2.01 16 41 H 0.42 1.89 8.93 -92.71 -0.83 1.06 16 42 H 0.04 1.18 8.04 -2.39 -0.02 1.16 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 44 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 45 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -92.60 376.07 -2.15 -94.75 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -2.15 Total: 11.38 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 6.37 Total: -5.84 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -8.13 Total: -105.75 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.12 Total: -41.45 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -92.60 -2.15 -94.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.710 kcal (2) G-P(sol) polarization free energy of solvation -92.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds