Wall clock time and date at job start Sat Apr 11 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47060 * 269.99820 * 3 2 1 5 5 H 1.48494 * 109.47145 * 30.00118 * 3 2 1 6 6 H 1.48508 * 109.47145 * 149.99967 * 3 2 1 7 7 C 1.37879 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00421 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47548 * 180.02562 * 9 7 2 11 11 C 1.38284 * 119.93239 * 89.99931 * 10 9 7 12 12 C 1.38113 * 120.07178 * 180.02562 * 11 10 9 13 13 C 1.38861 * 119.92963 * 359.97438 * 12 11 10 14 14 N 1.39944 * 120.06992 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99822 * 146.76836 * 14 13 12 16 16 O 1.21592 * 120.00106 * 354.89944 * 15 14 13 17 17 N 1.34776 * 119.99811 * 174.89130 * 15 14 13 18 18 C 1.47016 * 125.64953 * 359.69663 * 17 15 14 19 19 C 1.54343 * 107.26482 * 178.84537 * 18 17 15 20 20 C 1.55149 * 103.02135 * 338.14151 * 19 18 17 21 21 H 1.09004 * 111.00674 * 277.23317 * 20 19 18 22 22 N 1.46504 * 111.00538 * 153.37750 * 20 19 18 23 23 C 1.34779 * 119.99976 * 161.34615 * 22 20 19 24 24 N 1.34777 * 119.99809 * 179.97438 * 23 22 20 25 25 O 1.21585 * 120.00086 * 0.02562 * 23 22 20 26 26 C 1.47423 * 125.64602 * 180.02562 * 17 15 14 27 27 C 1.38870 * 119.85952 * 0.27109 * 13 12 11 28 28 C 1.38109 * 119.92728 * 359.49454 * 27 13 12 29 29 H 0.96996 * 120.00574 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46881 * 59.99827 * 9 7 2 31 31 H 1.09007 * 109.47157 * 300.00249 * 9 7 2 32 32 H 1.07997 * 119.96073 * 0.02562 * 11 10 9 33 33 H 1.08001 * 120.03073 * 179.97438 * 12 11 10 34 34 H 0.96998 * 120.00394 * 327.05512 * 14 13 12 35 35 H 1.08998 * 109.88332 * 298.39198 * 18 17 15 36 36 H 1.09001 * 109.88342 * 59.55973 * 18 17 15 37 37 H 1.08999 * 110.84788 * 219.66956 * 19 18 17 38 38 H 1.09004 * 110.51030 * 96.45679 * 19 18 17 39 39 H 0.96999 * 119.99778 * 341.35463 * 22 20 19 40 40 H 0.96999 * 119.99945 * 0.02562 * 24 23 22 41 41 H 0.96994 * 120.00123 * 180.02562 * 24 23 22 42 42 H 1.09007 * 110.36888 * 322.93099 * 26 17 15 43 43 H 1.08999 * 110.37064 * 85.25626 * 26 17 15 44 44 H 1.08001 * 120.03355 * 179.69946 * 27 13 12 45 45 H 1.08000 * 119.96241 * 180.22990 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6778 -4.1685 1.2008 12 6 3.5757 -5.2179 1.2053 13 6 4.0288 -5.7473 0.0042 14 7 4.9390 -6.8102 0.0053 15 6 4.8918 -7.7388 -0.9704 16 8 4.0021 -7.7059 -1.7985 17 7 5.8309 -8.7038 -1.0282 18 6 6.9604 -8.8570 -0.0996 19 6 7.7472 -10.1103 -0.5382 20 6 6.6993 -10.9136 -1.3529 21 1 6.0589 -11.5007 -0.6946 22 7 7.3511 -11.7690 -2.3478 23 6 6.6799 -12.8047 -2.8894 24 7 7.2793 -13.5913 -3.8051 25 8 5.5333 -13.0288 -2.5527 26 6 5.8995 -9.7766 -2.0371 27 6 3.5814 -5.2156 -1.1982 28 6 2.6798 -4.1694 -1.1959 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 2.3248 -3.7566 2.1346 33 1 3.9251 -5.6263 2.1421 34 1 5.6012 -6.8810 0.7106 35 1 7.6026 -7.9777 -0.1488 36 1 6.5894 -8.9913 0.9165 37 1 8.0821 -10.6809 0.3281 38 1 8.5924 -9.8301 -1.1669 39 1 8.2657 -11.5900 -2.6167 40 1 8.1939 -13.4122 -4.0740 41 1 6.7962 -14.3364 -4.1951 42 1 4.8975 -10.1197 -2.2948 43 1 6.4225 -9.4273 -2.9274 44 1 3.9357 -5.6219 -2.1340 45 1 2.3287 -3.7579 -2.1307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365082228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:53 Heat of formation + Delta-G solvation = -28.763798 kcal Electronic energy + Delta-G solvation = -27131.991151 eV Core-core repulsion = 23149.320265 eV Total energy + Delta-G solvation = -3982.670885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92773 -40.18766 -38.75864 -37.55717 -34.83963 -34.68671 -33.93411 -32.94247 -31.11388 -30.30042 -30.13993 -28.73571 -26.50487 -24.31858 -22.94113 -22.31110 -22.22584 -21.35507 -20.52869 -19.74840 -18.88903 -18.51062 -17.69251 -17.07190 -16.60439 -16.25634 -15.66016 -15.39981 -15.21780 -14.87372 -14.72278 -14.42632 -14.19965 -14.03130 -13.91925 -13.31657 -13.17474 -12.97565 -12.75178 -12.51386 -12.30435 -12.08803 -11.93875 -11.43365 -11.33708 -11.23404 -10.79213 -10.77463 -10.56907 -10.36626 -10.18177 -10.14031 -9.86497 -9.65803 -9.41253 -9.23159 -8.90444 -8.38199 -8.21924 -7.29044 -5.99277 -4.03207 1.97939 2.10711 2.15883 2.59995 2.73684 3.17371 3.33093 3.39126 3.43057 3.70843 3.87260 4.06895 4.13178 4.37406 4.43052 4.63225 4.69491 4.80182 5.06620 5.14925 5.34507 5.37680 5.44507 5.47731 5.52966 5.63739 5.76989 5.94652 6.01997 6.12371 6.18365 6.22276 6.26760 6.41900 6.63818 6.73298 6.99750 7.07250 7.23635 7.28004 7.41909 7.57525 7.78673 7.82651 7.93299 7.96590 8.13821 8.37663 8.51040 9.02158 9.60164 11.10262 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.001844 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.885403 B =15181.280205 C =15404.981865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.045 4.045 11 C -0.107 4.107 12 C -0.145 4.145 13 C 0.123 3.877 14 N -0.678 5.678 15 C 0.721 3.279 16 O -0.565 6.565 17 N -0.637 5.637 18 C 0.099 3.901 19 C -0.134 4.134 20 C 0.152 3.848 21 H 0.107 0.893 22 N -0.734 5.734 23 C 0.705 3.295 24 N -0.867 5.867 25 O -0.586 6.586 26 C 0.115 3.885 27 C -0.117 4.117 28 C -0.107 4.107 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.399 0.601 40 H 0.397 0.603 41 H 0.416 0.584 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.124 0.876 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.658 -26.058 -2.097 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.045 4.045 11 C -0.125 4.125 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.325 5.325 15 C 0.423 3.577 16 O -0.440 6.440 17 N -0.377 5.377 18 C -0.025 4.025 19 C -0.173 4.173 20 C 0.045 3.955 21 H 0.125 0.875 22 N -0.391 5.391 23 C 0.403 3.597 24 N -0.435 5.435 25 O -0.463 6.463 26 C -0.010 4.010 27 C -0.137 4.137 28 C -0.125 4.125 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.235 0.765 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.233 0.767 40 H 0.224 0.776 41 H 0.248 0.752 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.142 0.858 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.829 -25.945 -2.327 33.353 hybrid contribution 1.633 0.763 -0.077 1.804 sum 22.462 -25.181 -2.403 33.829 Atomic orbital electron populations 1.69954 1.06018 1.26743 1.50603 1.25015 0.94872 0.99211 0.95297 0.86545 0.79801 0.83255 0.78135 1.20641 1.21211 1.19853 1.21078 0.93047 0.89907 1.50803 0.92466 1.18347 0.92590 0.89578 0.98405 1.20694 0.96584 0.95400 0.91868 1.20856 0.97354 0.95824 0.98515 1.20689 1.00506 1.00014 0.95391 1.17289 0.95380 0.89850 0.94428 1.42455 1.36381 1.25246 1.28420 1.15387 0.81240 0.78693 0.82385 1.90985 1.35807 1.75337 1.41859 1.47397 1.27721 1.30244 1.32319 1.22001 0.88216 0.98259 0.94002 1.22891 0.97769 0.95516 1.01093 1.21922 0.94207 0.90230 0.89188 0.87483 1.44907 1.17162 1.31012 1.46006 1.15985 0.84578 0.79663 0.79474 1.42982 1.18715 1.35310 1.46487 1.91030 1.16572 1.73685 1.65027 1.22450 1.02337 0.85499 0.90678 1.21002 0.99496 0.96459 0.96752 1.20986 0.97375 0.95636 0.98522 0.92887 0.95293 0.95314 0.86012 0.86892 0.76512 0.90831 0.91002 0.88921 0.89725 0.76654 0.77556 0.75157 0.89439 0.91402 0.85828 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.48 9.09 -34.44 -0.31 -14.79 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 10 C -0.04 -1.01 5.07 -104.59 -0.53 -1.54 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 12 C -0.15 -2.46 9.96 -39.40 -0.39 -2.85 16 13 C 0.12 2.14 6.28 -83.69 -0.53 1.61 16 14 N -0.68 -9.24 5.30 -14.22 -0.08 -9.31 16 15 C 0.72 10.71 8.23 -86.92 -0.72 10.00 16 16 O -0.56 -10.97 14.29 5.28 0.08 -10.90 16 17 N -0.64 -6.64 3.33 -176.21 -0.59 -7.23 16 18 C 0.10 0.56 6.17 -3.06 -0.02 0.54 16 19 C -0.13 -0.45 6.57 -24.89 -0.16 -0.62 16 20 C 0.15 0.97 3.32 -65.77 -0.22 0.76 16 21 H 0.11 0.90 7.73 -51.93 -0.40 0.49 16 22 N -0.73 -3.54 5.23 -56.56 -0.30 -3.84 16 23 C 0.71 5.42 8.84 -86.92 -0.77 4.65 16 24 N -0.87 -2.96 8.88 27.63 0.25 -2.71 16 25 O -0.59 -7.70 16.93 5.29 0.09 -7.61 16 26 C 0.12 1.12 6.60 -2.52 -0.02 1.11 16 27 C -0.12 -2.28 8.65 -39.39 -0.34 -2.62 16 28 C -0.11 -2.26 9.69 -39.61 -0.38 -2.65 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.40 3.93 7.80 -40.82 -0.32 3.61 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.16 8.00 -51.93 -0.42 -0.26 16 39 H 0.40 0.57 8.53 -40.82 -0.35 0.23 16 40 H 0.40 0.01 8.84 -40.82 -0.36 -0.35 16 41 H 0.42 1.26 8.93 -40.82 -0.36 0.89 16 42 H 0.09 1.14 8.04 -51.92 -0.42 0.72 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.12 2.43 6.42 -52.49 -0.34 2.09 16 45 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -38.64 380.04 -10.42 -49.06 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.30 Total: 2.38 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -5.02 Total: -6.26 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.02 Total: -49.12 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.64 -10.42 -49.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.298 kcal (2) G-P(sol) polarization free energy of solvation -38.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds