Wall clock time and date at job start Sat Apr 11 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47060 * 269.99820 * 3 2 1 5 5 H 1.48494 * 109.47145 * 30.00118 * 3 2 1 6 6 H 1.48508 * 109.47145 * 149.99967 * 3 2 1 7 7 C 1.37879 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00421 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47548 * 180.02562 * 9 7 2 11 11 C 1.38284 * 119.93239 * 89.99931 * 10 9 7 12 12 C 1.38113 * 120.07178 * 180.02562 * 11 10 9 13 13 C 1.38861 * 119.92963 * 359.97438 * 12 11 10 14 14 N 1.39944 * 120.06992 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99822 * 146.76836 * 14 13 12 16 16 O 1.21592 * 120.00106 * 354.89944 * 15 14 13 17 17 N 1.34776 * 119.99811 * 174.89130 * 15 14 13 18 18 C 1.47016 * 125.64953 * 359.69663 * 17 15 14 19 19 C 1.54343 * 107.26482 * 178.84537 * 18 17 15 20 20 C 1.55149 * 103.02135 * 338.14151 * 19 18 17 21 21 H 1.09004 * 111.00674 * 277.23317 * 20 19 18 22 22 N 1.46504 * 111.00538 * 153.37750 * 20 19 18 23 23 C 1.34779 * 119.99976 * 161.34615 * 22 20 19 24 24 N 1.34777 * 119.99809 * 179.97438 * 23 22 20 25 25 O 1.21585 * 120.00086 * 0.02562 * 23 22 20 26 26 C 1.47423 * 125.64602 * 180.02562 * 17 15 14 27 27 C 1.38870 * 119.85952 * 0.27109 * 13 12 11 28 28 C 1.38109 * 119.92728 * 359.49454 * 27 13 12 29 29 H 0.96996 * 120.00574 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46881 * 59.99827 * 9 7 2 31 31 H 1.09007 * 109.47157 * 300.00249 * 9 7 2 32 32 H 1.07997 * 119.96073 * 0.02562 * 11 10 9 33 33 H 1.08001 * 120.03073 * 179.97438 * 12 11 10 34 34 H 0.96998 * 120.00394 * 327.05512 * 14 13 12 35 35 H 1.08998 * 109.88332 * 298.39198 * 18 17 15 36 36 H 1.09001 * 109.88342 * 59.55973 * 18 17 15 37 37 H 1.08999 * 110.84788 * 219.66956 * 19 18 17 38 38 H 1.09004 * 110.51030 * 96.45679 * 19 18 17 39 39 H 0.96999 * 119.99778 * 341.35463 * 22 20 19 40 40 H 0.96999 * 119.99945 * 0.02562 * 24 23 22 41 41 H 0.96994 * 120.00123 * 180.02562 * 24 23 22 42 42 H 1.09007 * 110.36888 * 322.93099 * 26 17 15 43 43 H 1.08999 * 110.37064 * 85.25626 * 26 17 15 44 44 H 1.08001 * 120.03355 * 179.69946 * 27 13 12 45 45 H 1.08000 * 119.96241 * 180.22990 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6778 -4.1685 1.2008 12 6 3.5757 -5.2179 1.2053 13 6 4.0288 -5.7473 0.0042 14 7 4.9390 -6.8102 0.0053 15 6 4.8918 -7.7388 -0.9704 16 8 4.0021 -7.7059 -1.7985 17 7 5.8309 -8.7038 -1.0282 18 6 6.9604 -8.8570 -0.0996 19 6 7.7472 -10.1103 -0.5382 20 6 6.6993 -10.9136 -1.3529 21 1 6.0589 -11.5007 -0.6946 22 7 7.3511 -11.7690 -2.3478 23 6 6.6799 -12.8047 -2.8894 24 7 7.2793 -13.5913 -3.8051 25 8 5.5333 -13.0288 -2.5527 26 6 5.8995 -9.7766 -2.0371 27 6 3.5814 -5.2156 -1.1982 28 6 2.6798 -4.1694 -1.1959 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 2.3248 -3.7566 2.1346 33 1 3.9251 -5.6263 2.1421 34 1 5.6012 -6.8810 0.7106 35 1 7.6026 -7.9777 -0.1488 36 1 6.5894 -8.9913 0.9165 37 1 8.0821 -10.6809 0.3281 38 1 8.5924 -9.8301 -1.1669 39 1 8.2657 -11.5900 -2.6167 40 1 8.1939 -13.4122 -4.0740 41 1 6.7962 -14.3364 -4.1951 42 1 4.8975 -10.1197 -2.2948 43 1 6.4225 -9.4273 -2.9274 44 1 3.9357 -5.6219 -2.1340 45 1 2.3287 -3.7579 -2.1307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365082228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:52 Heat of formation + Delta-G solvation = -59.435642 kcal Electronic energy + Delta-G solvation = -27133.321181 eV Core-core repulsion = 23149.320265 eV Total energy + Delta-G solvation = -3984.000916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88985 -40.98238 -39.95396 -38.59789 -36.29224 -35.45040 -34.95607 -34.40473 -32.35820 -31.77830 -31.29753 -29.54300 -28.20525 -25.53790 -24.48449 -23.77039 -22.74946 -22.20759 -21.76505 -20.92763 -19.61688 -19.26552 -18.51526 -18.41656 -18.04676 -17.32722 -16.81749 -16.47367 -16.43614 -16.01311 -15.92113 -15.52644 -15.21654 -15.04901 -14.57382 -14.56308 -14.44577 -14.27735 -14.08937 -13.95410 -13.61229 -13.26963 -13.14428 -12.79077 -12.62421 -12.56116 -12.42977 -12.05863 -11.86604 -11.69290 -11.55069 -11.51708 -11.30414 -10.94889 -10.73622 -10.59039 -10.16229 -9.77086 -9.75338 -8.82005 -8.16373 -6.31424 0.48083 0.58010 1.28279 1.40814 1.42425 1.53823 1.94401 2.01010 2.13886 2.41660 2.86765 3.02559 3.12568 3.42738 3.55440 3.69675 4.01749 4.05173 4.15564 4.19281 4.28946 4.39238 4.55300 4.61571 4.66068 4.70948 4.74117 4.78234 4.93938 5.08449 5.12519 5.14545 5.32587 5.34799 5.42429 5.49036 5.50126 5.61982 5.77111 5.88728 5.93182 6.03728 6.09405 6.13721 6.26773 6.80662 6.81231 7.10214 7.36840 7.39135 7.65188 8.91544 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.001844 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.885403 B =15181.280205 C =15404.981865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.057 3.943 10 C -0.077 4.077 11 C -0.110 4.110 12 C -0.127 4.127 13 C 0.138 3.862 14 N -0.662 5.662 15 C 0.713 3.287 16 O -0.620 6.620 17 N -0.630 5.630 18 C 0.087 3.913 19 C -0.115 4.115 20 C 0.158 3.842 21 H 0.086 0.914 22 N -0.716 5.716 23 C 0.697 3.303 24 N -0.846 5.846 25 O -0.648 6.648 26 C 0.112 3.888 27 C -0.125 4.125 28 C -0.119 4.119 29 H 0.265 0.735 30 H -0.002 1.002 31 H 0.008 0.992 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.423 0.577 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.420 0.580 40 H 0.416 0.584 41 H 0.420 0.580 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.279 -27.048 -0.560 38.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.077 4.077 11 C -0.129 4.129 12 C -0.148 4.148 13 C 0.044 3.956 14 N -0.311 5.311 15 C 0.415 3.585 16 O -0.500 6.500 17 N -0.368 5.368 18 C -0.035 4.035 19 C -0.153 4.153 20 C 0.050 3.950 21 H 0.104 0.896 22 N -0.374 5.374 23 C 0.394 3.606 24 N -0.415 5.415 25 O -0.529 6.529 26 C -0.013 4.013 27 C -0.145 4.145 28 C -0.138 4.138 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.147 0.853 33 H 0.179 0.821 34 H 0.262 0.738 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.258 0.742 40 H 0.247 0.753 41 H 0.252 0.748 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 25.606 -26.984 -0.783 37.207 hybrid contribution 0.257 0.895 -0.611 1.114 sum 25.863 -26.088 -1.394 36.762 Atomic orbital electron populations 1.70088 1.07754 1.27916 1.51391 1.25968 0.95783 1.03220 0.94624 0.85404 0.78694 0.78259 0.78437 1.19996 1.20437 1.18652 1.21395 0.93173 0.91106 1.50809 0.92494 1.18093 0.92884 0.91246 0.95800 1.20400 0.97822 0.95794 0.93728 1.20974 0.97831 0.96536 0.97525 1.20992 0.98541 0.98213 0.97022 1.17355 0.94752 0.89775 0.93736 1.42190 1.36101 1.23866 1.28923 1.15618 0.81492 0.79472 0.81897 1.90956 1.38331 1.76849 1.43837 1.47383 1.27702 1.28669 1.33022 1.22458 0.86978 1.00353 0.93705 1.22907 0.96840 0.93706 1.01809 1.21729 0.94997 0.89171 0.89057 0.89621 1.44669 1.17735 1.29742 1.45230 1.16306 0.84012 0.80377 0.79868 1.42796 1.19515 1.34356 1.44872 1.90996 1.19458 1.75348 1.67138 1.22507 1.00665 0.86626 0.91481 1.20974 0.99568 0.96139 0.97840 1.20890 0.98444 0.96689 0.97772 0.92621 0.98415 0.97404 0.85290 0.82123 0.73769 0.88780 0.89336 0.86255 0.87138 0.74177 0.75255 0.74780 0.93894 0.90785 0.86361 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -30.86 9.09 25.60 0.23 -30.63 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.06 3.17 5.10 29.10 0.15 3.32 16 10 C -0.08 -3.60 5.07 -19.85 -0.10 -3.70 16 11 C -0.11 -4.30 9.69 22.25 0.22 -4.09 16 12 C -0.13 -3.97 9.96 22.39 0.22 -3.74 16 13 C 0.14 4.57 6.28 38.15 0.24 4.81 16 14 N -0.66 -16.36 5.30 -317.17 -1.68 -18.04 16 15 C 0.71 20.56 8.23 179.05 1.47 22.04 16 16 O -0.62 -24.80 14.29 -4.01 -0.06 -24.86 16 17 N -0.63 -12.08 3.33 -829.67 -2.76 -14.84 16 18 C 0.09 0.62 6.17 86.74 0.54 1.15 16 19 C -0.11 -0.24 6.57 31.79 0.21 -0.03 16 20 C 0.16 1.74 3.32 46.39 0.15 1.89 16 21 H 0.09 1.38 7.73 -2.38 -0.02 1.36 16 22 N -0.72 -5.36 5.23 -451.13 -2.36 -7.72 16 23 C 0.70 10.12 8.84 179.05 1.58 11.70 16 24 N -0.85 -4.38 8.88 -184.75 -1.64 -6.02 16 25 O -0.65 -17.59 16.93 -3.98 -0.07 -17.66 16 26 C 0.11 2.15 6.60 86.86 0.57 2.73 16 27 C -0.12 -4.95 8.65 22.39 0.19 -4.76 16 28 C -0.12 -5.32 9.69 22.25 0.22 -5.11 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 31 H 0.01 0.45 8.08 -2.38 -0.02 0.43 16 32 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 33 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.42 6.50 7.80 -92.71 -0.72 5.77 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 0.41 8.12 -2.39 -0.02 0.39 16 37 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.11 -0.25 8.00 -2.39 -0.02 -0.27 16 39 H 0.42 -0.35 8.53 -92.71 -0.79 -1.14 16 40 H 0.42 -1.11 8.84 -92.71 -0.82 -1.93 16 41 H 0.42 2.05 8.93 -92.71 -0.83 1.22 16 42 H 0.04 1.21 8.04 -2.38 -0.02 1.19 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.12 4.82 6.42 -2.91 -0.02 4.80 16 45 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -91.67 380.04 -1.99 -93.66 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.10 Total: 9.48 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 6.36 Total: -3.84 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -8.16 Total: -103.77 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.12 Total: -42.52 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -91.67 -1.99 -93.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.222 kcal (2) G-P(sol) polarization free energy of solvation -91.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds