Wall clock time and date at job start Sat Apr 11 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99590 * 2 1 4 4 H 1.48507 * 109.46727 * 239.99735 * 3 2 1 5 5 H 1.48504 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47330 * 119.99929 * 3 2 1 7 7 C 1.39931 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99783 * 196.78129 * 7 2 1 9 9 C 1.41406 * 119.99666 * 16.79025 * 7 2 1 10 10 C 1.40772 * 120.21562 * 25.16177 * 9 7 2 11 11 C 1.37642 * 119.88849 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.31769 * 0.02883 * 11 10 9 13 13 C 1.39240 * 120.43214 * 359.94948 * 12 11 10 14 14 N 1.39950 * 119.95107 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00697 * 145.77077 * 14 13 12 16 16 O 1.21584 * 119.99764 * 354.85155 * 15 14 13 17 17 N 1.34779 * 120.00331 * 174.84341 * 15 14 13 18 18 C 1.46500 * 119.99919 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46907 * 180.02562 * 18 17 15 20 20 N 1.46893 * 109.47211 * 180.02562 * 19 18 17 21 21 C 1.47189 * 111.00231 * 56.84325 * 20 19 18 22 22 C 1.52994 * 108.72179 * 167.62162 * 21 20 19 23 23 N 1.46013 * 110.03792 * 50.30387 * 22 21 20 24 24 C 1.33712 * 122.92813 * 341.84720 * 23 22 21 25 25 O 1.21276 * 118.62401 * 181.68607 * 24 23 22 26 26 C 1.46900 * 111.00051 * 293.95266 * 20 19 18 27 27 C 1.38274 * 120.10609 * 0.27846 * 13 12 11 28 28 H 0.96997 * 120.00555 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.05452 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.83831 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78335 * 179.97438 * 12 11 10 32 32 H 0.97006 * 119.99286 * 325.77258 * 14 13 12 33 33 H 0.96999 * 119.99703 * 0.02562 * 17 15 14 34 34 H 1.08996 * 109.46883 * 60.00526 * 18 17 15 35 35 H 1.08999 * 109.47100 * 299.99887 * 18 17 15 36 36 H 1.09005 * 109.46904 * 59.99854 * 19 18 17 37 37 H 1.08999 * 109.47464 * 300.00232 * 19 18 17 38 38 H 1.08998 * 109.59469 * 287.41091 * 21 20 19 39 39 H 1.09004 * 109.59268 * 47.86123 * 21 20 19 40 40 H 1.08999 * 109.37493 * 290.12978 * 22 21 20 41 41 H 1.09002 * 109.37841 * 170.48061 * 22 21 20 42 42 H 0.97002 * 118.53509 * 162.12468 * 23 22 21 43 43 H 1.09003 * 109.38640 * 53.51211 * 26 20 19 44 44 H 1.08993 * 109.39203 * 293.82135 * 26 20 19 45 45 H 1.08001 * 120.16667 * 179.74316 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2126 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2315 0.2706 9 6 1.3462 -2.4105 -0.3527 10 6 0.2108 -2.3743 -1.1841 11 6 -0.4285 -3.5451 -1.5233 12 6 0.0396 -4.7600 -1.0498 13 6 1.1617 -4.8112 -0.2270 14 7 1.6262 -6.0441 0.2452 15 6 2.9479 -6.2464 0.4144 16 8 3.7425 -5.3932 0.0695 17 7 3.3888 -7.3942 0.9663 18 6 4.8254 -7.6138 1.1508 19 6 5.0537 -8.9843 1.7915 20 7 6.4942 -9.2043 1.9771 21 6 7.0916 -8.1310 2.7880 22 6 8.4989 -8.5588 3.2088 23 7 9.2520 -9.0160 2.0445 24 6 8.6683 -9.3737 0.8959 25 8 9.3673 -9.7713 -0.0119 26 6 7.1824 -9.3045 0.6832 27 6 1.8148 -3.6455 0.1287 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1580 -1.4295 -1.5552 30 1 -1.2997 -3.5164 -2.1609 31 1 -0.4689 -5.6734 -1.3210 32 1 0.9968 -6.7530 0.4506 33 1 2.7548 -8.0749 1.2412 34 1 5.2313 -6.8372 1.7989 35 1 5.3257 -7.5777 0.1830 36 1 4.6477 -9.7607 1.1430 37 1 4.5533 -9.0210 2.7592 38 1 7.1483 -7.2159 2.1985 39 1 6.4811 -7.9599 3.6747 40 1 8.4286 -9.3687 3.9349 41 1 9.0137 -7.7121 3.6629 42 1 10.2186 -9.0661 2.1083 43 1 6.9441 -8.4298 0.0779 44 1 6.8489 -10.2032 0.1645 45 1 2.6828 -3.6837 0.7702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365845197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:55 Heat of formation + Delta-G solvation = -27.501687 kcal Electronic energy + Delta-G solvation = -27448.006132 eV Core-core repulsion = 23465.389976 eV Total energy + Delta-G solvation = -3982.616156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80833 -39.94619 -38.17771 -37.28848 -35.64201 -34.45550 -34.08598 -32.98576 -30.23988 -29.80350 -29.73537 -27.87398 -25.94003 -25.26031 -24.23283 -22.23711 -21.67906 -20.86091 -20.07302 -19.50163 -18.14784 -17.75488 -17.45337 -17.28184 -16.47097 -15.83909 -15.63164 -15.30823 -15.18259 -14.98393 -14.70081 -14.51942 -14.21234 -14.09444 -13.72795 -13.47989 -13.10188 -12.93874 -12.83882 -12.52468 -12.16659 -12.12772 -11.90969 -11.65824 -11.51717 -11.17421 -11.09789 -10.90892 -10.48188 -10.28890 -10.21837 -9.73144 -9.51849 -9.50654 -9.13987 -9.06555 -8.99135 -8.96420 -7.43017 -6.88704 -6.69193 -4.32095 2.25077 2.69226 2.81735 2.86809 2.97090 3.09201 3.13022 3.23957 3.31308 3.67995 3.97293 4.10757 4.25192 4.44833 4.50020 4.52570 4.66552 4.69024 4.82402 4.92966 5.07478 5.12939 5.18436 5.36150 5.49734 5.64723 5.73851 6.15546 6.17312 6.25063 6.40684 6.42454 6.49130 6.74461 6.78565 6.87456 7.05652 7.10094 7.25060 7.34296 7.69148 7.82094 7.82617 8.00900 8.11991 8.25530 8.41597 8.67657 8.89863 8.98288 9.03381 10.23326 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002284 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.946192 B =12257.056462 C =13494.990473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.168 3.832 14 N -0.680 5.680 15 C 0.698 3.302 16 O -0.566 6.566 17 N -0.749 5.749 18 C 0.101 3.899 19 C 0.042 3.958 20 N -0.520 5.520 21 C 0.022 3.978 22 C 0.116 3.884 23 N -0.720 5.720 24 C 0.527 3.473 25 O -0.553 6.553 26 C 0.027 3.973 27 C -0.210 4.210 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.394 0.606 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.401 0.599 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 -16.929 8.403 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.076 3.924 14 N -0.326 5.326 15 C 0.398 3.602 16 O -0.441 6.441 17 N -0.407 5.407 18 C -0.026 4.026 19 C -0.087 4.087 20 N -0.245 5.245 21 C -0.106 4.106 22 C -0.009 4.009 23 N -0.372 5.372 24 C 0.313 3.687 25 O -0.430 6.430 26 C -0.103 4.103 27 C -0.232 4.232 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.228 0.772 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.237 0.763 43 H 0.101 0.899 44 H 0.135 0.865 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.696 -16.631 7.889 20.805 hybrid contribution -0.141 0.849 -0.017 0.861 sum 9.555 -15.782 7.872 20.058 Atomic orbital electron populations 1.69815 1.07504 1.29181 1.35652 1.25894 0.94738 1.01222 0.92275 0.86371 0.80124 0.80206 0.80020 1.18816 1.20378 1.19047 1.19539 0.97729 0.90963 1.40599 0.90466 1.17484 0.90879 0.91613 0.88298 1.21342 0.99411 0.96858 1.01647 1.20449 0.98528 0.92679 0.99451 1.20006 1.02615 0.96891 1.08963 1.17218 0.95888 0.82571 0.96712 1.42567 1.05192 1.15870 1.69001 1.15967 0.83031 0.82214 0.78997 1.90986 1.54252 1.43851 1.55004 1.44930 1.07524 1.19750 1.68463 1.21867 0.81579 0.97845 1.01271 1.22493 0.88108 0.95643 1.02443 1.62864 1.02781 1.44241 1.14586 1.22657 0.95272 0.93233 0.99417 1.21512 0.91497 1.00150 0.87719 1.45546 1.10938 1.67434 1.13326 1.20067 0.90573 0.76140 0.81871 1.90790 1.63990 1.47004 1.41232 1.22439 0.90192 1.05176 0.92487 1.20978 1.04307 0.90926 1.06979 0.90914 0.86329 0.89040 0.89359 0.77243 0.77230 0.91346 0.91705 0.89287 0.88984 0.92494 0.87989 0.90642 0.89846 0.76323 0.89926 0.86479 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.94 55.55 0.61 -20.16 16 2 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 3 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.66 9.05 -37.74 -0.34 -13.01 16 8 H 0.08 2.10 7.90 -52.49 -0.41 1.69 16 9 C 0.12 3.33 5.57 -106.85 -0.59 2.74 16 10 C -0.17 -4.56 8.69 -38.84 -0.34 -4.90 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.55 16 12 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 13 C 0.17 3.81 6.25 -83.77 -0.52 3.29 16 14 N -0.68 -11.87 5.34 -14.28 -0.08 -11.95 16 15 C 0.70 12.21 8.29 -86.92 -0.72 11.49 16 16 O -0.57 -12.81 14.10 5.29 0.07 -12.73 16 17 N -0.75 -8.47 5.56 -65.23 -0.36 -8.83 16 18 C 0.10 0.99 4.97 -4.04 -0.02 0.97 16 19 C 0.04 0.25 5.46 -3.83 -0.02 0.23 16 20 N -0.52 -3.50 4.94 -236.10 -1.17 -4.67 16 21 C 0.02 0.13 4.67 -3.67 -0.02 0.11 16 22 C 0.12 0.56 7.39 -4.31 -0.03 0.53 16 23 N -0.72 -5.28 5.52 -61.06 -0.34 -5.62 16 24 C 0.53 5.45 7.81 -11.67 -0.09 5.36 16 25 O -0.55 -7.99 17.82 5.56 0.10 -7.89 16 26 C 0.03 0.23 5.43 -5.19 -0.03 0.20 16 27 C -0.21 -5.49 8.39 -38.68 -0.32 -5.81 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.12 3.21 6.17 -52.48 -0.32 2.88 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.39 5.17 8.84 -40.82 -0.36 4.81 16 33 H 0.39 3.02 8.49 -40.82 -0.35 2.67 16 34 H 0.07 0.75 6.65 -51.93 -0.35 0.41 16 35 H 0.06 0.74 6.42 -51.93 -0.33 0.40 16 36 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.41 6.96 -51.93 -0.36 0.05 16 39 H 0.10 0.45 8.06 -51.93 -0.42 0.03 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.40 2.53 8.84 -40.82 -0.36 2.17 16 43 H 0.08 0.74 6.20 -51.93 -0.32 0.41 16 44 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.11 2.85 6.48 -52.49 -0.34 2.51 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -35.48 368.36 -10.59 -46.07 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.02 Total: 11.79 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.93 Total: -5.67 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -1.34 Total: -51.24 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.48 -10.59 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365845197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.568 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds