Wall clock time and date at job start Sat Apr 11 2020 03:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99590 * 2 1 4 4 H 1.48507 * 109.46727 * 239.99735 * 3 2 1 5 5 H 1.48504 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47330 * 119.99929 * 3 2 1 7 7 C 1.39931 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99783 * 196.78129 * 7 2 1 9 9 C 1.41406 * 119.99666 * 16.79025 * 7 2 1 10 10 C 1.40772 * 120.21562 * 25.16177 * 9 7 2 11 11 C 1.37642 * 119.88849 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.31769 * 0.02883 * 11 10 9 13 13 C 1.39240 * 120.43214 * 359.94948 * 12 11 10 14 14 N 1.39950 * 119.95107 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00697 * 145.77077 * 14 13 12 16 16 O 1.21584 * 119.99764 * 354.85155 * 15 14 13 17 17 N 1.34779 * 120.00331 * 174.84341 * 15 14 13 18 18 C 1.46500 * 119.99919 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46907 * 180.02562 * 18 17 15 20 20 N 1.46893 * 109.47211 * 180.02562 * 19 18 17 21 21 C 1.47189 * 111.00231 * 56.84325 * 20 19 18 22 22 C 1.52994 * 108.72179 * 167.62162 * 21 20 19 23 23 N 1.46013 * 110.03792 * 50.30387 * 22 21 20 24 24 C 1.33712 * 122.92813 * 341.84720 * 23 22 21 25 25 O 1.21276 * 118.62401 * 181.68607 * 24 23 22 26 26 C 1.46900 * 111.00051 * 293.95266 * 20 19 18 27 27 C 1.38274 * 120.10609 * 0.27846 * 13 12 11 28 28 H 0.96997 * 120.00555 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.05452 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.83831 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78335 * 179.97438 * 12 11 10 32 32 H 0.97006 * 119.99286 * 325.77258 * 14 13 12 33 33 H 0.96999 * 119.99703 * 0.02562 * 17 15 14 34 34 H 1.08996 * 109.46883 * 60.00526 * 18 17 15 35 35 H 1.08999 * 109.47100 * 299.99887 * 18 17 15 36 36 H 1.09005 * 109.46904 * 59.99854 * 19 18 17 37 37 H 1.08999 * 109.47464 * 300.00232 * 19 18 17 38 38 H 1.08998 * 109.59469 * 287.41091 * 21 20 19 39 39 H 1.09004 * 109.59268 * 47.86123 * 21 20 19 40 40 H 1.08999 * 109.37493 * 290.12978 * 22 21 20 41 41 H 1.09002 * 109.37841 * 170.48061 * 22 21 20 42 42 H 0.97002 * 118.53509 * 162.12468 * 23 22 21 43 43 H 1.09003 * 109.38640 * 53.51211 * 26 20 19 44 44 H 1.08993 * 109.39203 * 293.82135 * 26 20 19 45 45 H 1.08001 * 120.16667 * 179.74316 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2126 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2315 0.2706 9 6 1.3462 -2.4105 -0.3527 10 6 0.2108 -2.3743 -1.1841 11 6 -0.4285 -3.5451 -1.5233 12 6 0.0396 -4.7600 -1.0498 13 6 1.1617 -4.8112 -0.2270 14 7 1.6262 -6.0441 0.2452 15 6 2.9479 -6.2464 0.4144 16 8 3.7425 -5.3932 0.0695 17 7 3.3888 -7.3942 0.9663 18 6 4.8254 -7.6138 1.1508 19 6 5.0537 -8.9843 1.7915 20 7 6.4942 -9.2043 1.9771 21 6 7.0916 -8.1310 2.7880 22 6 8.4989 -8.5588 3.2088 23 7 9.2520 -9.0160 2.0445 24 6 8.6683 -9.3737 0.8959 25 8 9.3673 -9.7713 -0.0119 26 6 7.1824 -9.3045 0.6832 27 6 1.8148 -3.6455 0.1287 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1580 -1.4295 -1.5552 30 1 -1.2997 -3.5164 -2.1609 31 1 -0.4689 -5.6734 -1.3210 32 1 0.9968 -6.7530 0.4506 33 1 2.7548 -8.0749 1.2412 34 1 5.2313 -6.8372 1.7989 35 1 5.3257 -7.5777 0.1830 36 1 4.6477 -9.7607 1.1430 37 1 4.5533 -9.0210 2.7592 38 1 7.1483 -7.2159 2.1985 39 1 6.4811 -7.9599 3.6747 40 1 8.4286 -9.3687 3.9349 41 1 9.0137 -7.7121 3.6629 42 1 10.2186 -9.0661 2.1083 43 1 6.9441 -8.4298 0.0779 44 1 6.8489 -10.2032 0.1645 45 1 2.6828 -3.6837 0.7702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365845197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:54 Heat of formation + Delta-G solvation = -57.100783 kcal Electronic energy + Delta-G solvation = -27449.289645 eV Core-core repulsion = 23465.389976 eV Total energy + Delta-G solvation = -3983.899669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62115 -41.27205 -39.31361 -38.69483 -36.54982 -36.11287 -35.17362 -34.70181 -31.73692 -30.84571 -30.78171 -29.32890 -27.26561 -26.71835 -24.83827 -23.45386 -22.78961 -22.67185 -21.64237 -20.14905 -19.61002 -19.28705 -18.30360 -17.93872 -17.62517 -17.23036 -16.84994 -16.59983 -16.39425 -16.15118 -15.83467 -15.64501 -15.44897 -15.22496 -14.81712 -14.64543 -14.55768 -14.18780 -13.92048 -13.59525 -13.50359 -13.21672 -13.02795 -12.92779 -12.77620 -12.70091 -12.46644 -12.18359 -12.11752 -11.98521 -11.56933 -11.26697 -11.11041 -10.99483 -10.79639 -10.19200 -10.09881 -9.62942 -9.38103 -8.71913 -8.57675 -6.36157 0.93962 1.04057 1.35780 1.45538 1.47026 1.51176 1.66297 2.17842 2.21077 2.25403 2.65328 2.75511 3.34079 3.49618 3.74701 3.75535 3.88596 3.91610 4.05149 4.24114 4.43461 4.48482 4.48679 4.50895 4.65489 4.75035 4.80211 4.93406 4.99690 5.06474 5.11392 5.13390 5.21056 5.33175 5.36681 5.57810 5.68269 5.73594 5.83959 5.86570 6.06947 6.12342 6.20152 6.20301 6.37646 6.69749 6.95178 7.02116 7.09405 7.11993 7.60115 8.33821 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002284 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.946192 B =12257.056462 C =13494.990473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.089 3.911 10 C -0.200 4.200 11 C -0.091 4.091 12 C -0.251 4.251 13 C 0.177 3.823 14 N -0.668 5.668 15 C 0.693 3.307 16 O -0.622 6.622 17 N -0.719 5.719 18 C 0.101 3.899 19 C 0.054 3.946 20 N -0.513 5.513 21 C 0.017 3.983 22 C 0.114 3.886 23 N -0.711 5.711 24 C 0.520 3.480 25 O -0.604 6.604 26 C 0.031 3.969 27 C -0.237 4.237 28 H 0.289 0.711 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.419 0.581 33 H 0.418 0.582 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.039 0.961 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.406 0.594 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.870 -18.735 9.628 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.220 4.220 11 C -0.110 4.110 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.317 5.317 15 C 0.393 3.607 16 O -0.502 6.502 17 N -0.378 5.378 18 C -0.025 4.025 19 C -0.074 4.074 20 N -0.237 5.237 21 C -0.111 4.111 22 C -0.009 4.009 23 N -0.362 5.362 24 C 0.307 3.693 25 O -0.486 6.486 26 C -0.100 4.100 27 C -0.259 4.259 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.257 0.743 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.057 0.943 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.242 0.758 43 H 0.091 0.909 44 H 0.142 0.858 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.610 -18.527 9.196 22.404 hybrid contribution 0.178 1.246 -0.340 1.304 sum 8.788 -17.281 8.856 21.313 Atomic orbital electron populations 1.69845 1.08663 1.30592 1.35627 1.26676 0.95605 1.04143 0.91231 0.85299 0.78908 0.75881 0.79857 1.18874 1.18362 1.18652 1.19696 0.97449 0.92743 1.43429 0.92041 1.17830 0.91951 0.92392 0.89222 1.21306 1.00132 0.97630 1.02953 1.20834 0.98901 0.92171 0.99054 1.20447 1.01756 0.98070 1.07003 1.17265 0.95302 0.83474 0.95675 1.42301 1.05912 1.14846 1.68638 1.16238 0.82480 0.83098 0.78896 1.90965 1.55607 1.46271 1.57307 1.44661 1.08796 1.18111 1.66206 1.22015 0.80055 0.99970 1.00504 1.22529 0.87926 0.93328 1.03634 1.62950 1.02955 1.44338 1.13472 1.22792 0.96329 0.92225 0.99751 1.21752 0.90818 1.01576 0.86791 1.45614 1.11554 1.65838 1.13230 1.20420 0.91237 0.75677 0.81990 1.90758 1.65136 1.49655 1.43063 1.22367 0.89251 1.05025 0.93318 1.20933 1.04563 0.92247 1.08153 0.89992 0.87834 0.85863 0.84927 0.74281 0.74463 0.92622 0.93562 0.87647 0.86561 0.94292 0.85869 0.88891 0.87670 0.75798 0.90946 0.85837 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.97 10.94 21.82 0.24 -43.73 16 2 C 0.04 2.03 5.16 85.25 0.44 2.47 16 3 Si 0.98 40.23 29.59 68.60 2.03 42.26 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.50 -29.46 9.05 23.46 0.21 -29.24 16 8 H 0.06 3.62 7.90 -2.91 -0.02 3.59 16 9 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 10 C -0.20 -10.84 8.69 22.75 0.20 -10.65 16 11 C -0.09 -4.14 10.02 22.20 0.22 -3.92 16 12 C -0.25 -10.44 9.97 22.58 0.23 -10.21 16 13 C 0.18 7.89 6.25 38.09 0.24 8.13 16 14 N -0.67 -22.12 5.34 -317.34 -1.70 -23.82 16 15 C 0.69 23.76 8.29 179.05 1.48 25.25 16 16 O -0.62 -29.05 14.10 -3.98 -0.06 -29.11 16 17 N -0.72 -14.78 5.56 -478.54 -2.66 -17.44 16 18 C 0.10 1.84 4.97 86.38 0.43 2.27 16 19 C 0.05 0.50 5.46 86.31 0.47 0.97 16 20 N -0.51 -5.82 4.94 -900.89 -4.45 -10.27 16 21 C 0.02 0.17 4.67 86.25 0.40 0.57 16 22 C 0.11 0.85 7.39 86.47 0.64 1.48 16 23 N -0.71 -9.83 5.52 -466.07 -2.57 -12.40 16 24 C 0.52 10.78 7.81 87.68 0.69 11.46 16 25 O -0.60 -18.13 17.82 -3.02 -0.05 -18.18 16 26 C 0.03 0.50 5.43 85.42 0.46 0.96 16 27 C -0.24 -12.86 8.39 22.85 0.19 -12.67 16 28 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 29 H 0.10 5.81 6.17 -2.91 -0.02 5.79 16 30 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 32 H 0.42 9.49 8.84 -92.70 -0.82 8.67 16 33 H 0.42 4.83 8.49 -92.71 -0.79 4.04 16 34 H 0.06 1.20 6.65 -2.39 -0.02 1.18 16 35 H 0.05 1.05 6.42 -2.39 -0.02 1.04 16 36 H 0.11 0.72 8.12 -2.38 -0.02 0.70 16 37 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.04 0.54 6.96 -2.39 -0.02 0.52 16 39 H 0.12 0.72 8.06 -2.38 -0.02 0.70 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.41 4.87 8.84 -92.71 -0.82 4.05 16 43 H 0.07 1.33 6.20 -2.39 -0.01 1.32 16 44 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 4.76 6.48 -2.91 -0.02 4.74 16 Total: -1.00 -83.59 368.36 -4.40 -87.99 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -1.36 Total: 32.79 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 6.18 Total: -8.09 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -11.14 Total: -107.67 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.11 Total: -47.29 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -83.59 -4.40 -87.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365845197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.892 kcal (2) G-P(sol) polarization free energy of solvation -83.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds