Wall clock time and date at job start Sat Apr 11 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34638 * 116.99520 * 2 1 4 4 O 1.21508 * 120.00582 * 0.02562 * 3 2 1 5 5 N 1.34786 * 119.99629 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99756 * 179.97438 * 5 3 2 7 7 H 1.08995 * 110.78311 * 323.22303 * 6 5 3 8 8 C 1.55158 * 110.71510 * 86.45698 * 6 5 3 9 9 C 1.54918 * 101.58021 * 153.86189 * 8 6 5 10 10 N 1.47424 * 104.82911 * 322.99069 * 9 8 6 11 11 C 1.34780 * 125.64679 * 204.08949 * 10 9 8 12 12 O 1.21279 * 119.99773 * 180.02562 * 11 10 9 13 13 C 1.50707 * 119.99767 * 0.02562 * 11 10 9 14 14 H 1.08997 * 109.46907 * 300.00292 * 13 11 10 15 15 C 1.50694 * 109.46797 * 60.00328 * 13 11 10 16 16 H 1.08000 * 119.99896 * 235.35520 * 15 13 11 17 17 C 1.37882 * 120.00260 * 55.35458 * 15 13 11 18 18 N 1.31514 * 119.99910 * 1.99341 * 17 15 13 19 19 Si 1.86801 * 120.00053 * 181.99243 * 17 15 13 20 20 H 1.48500 * 109.47112 * 59.99594 * 19 17 15 21 21 H 1.48495 * 109.47378 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47070 * 300.00094 * 19 17 15 23 23 C 1.50697 * 109.46710 * 180.02562 * 13 11 10 24 24 C 1.38229 * 120.00333 * 47.19688 * 23 13 11 25 25 C 1.38232 * 120.00283 * 179.97438 * 24 23 13 26 26 C 1.38244 * 119.99878 * 359.97438 * 25 24 23 27 27 C 1.38229 * 119.99839 * 0.02562 * 26 25 24 28 28 C 1.38238 * 119.99568 * 227.14994 * 23 13 11 29 29 C 1.47018 * 108.70649 * 24.35516 * 10 9 8 30 30 H 1.09004 * 109.46647 * 59.99994 * 1 2 3 31 31 H 1.08993 * 109.46695 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46800 * 299.99891 * 1 2 3 33 33 H 0.97000 * 119.99981 * 0.02562 * 5 3 2 34 34 H 1.09000 * 111.00859 * 35.78998 * 8 6 5 35 35 H 1.08992 * 111.00538 * 271.93575 * 8 6 5 36 36 H 1.08994 * 110.36492 * 204.14959 * 9 8 6 37 37 H 1.09001 * 110.36207 * 81.82626 * 9 8 6 38 38 H 0.97002 * 119.99873 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.00219 * 0.25892 * 24 23 13 40 40 H 1.07997 * 120.00285 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.99831 * 179.97438 * 26 25 24 42 42 H 1.08002 * 120.00336 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.00331 * 0.06898 * 28 23 13 44 44 H 1.08995 * 109.88583 * 118.12644 * 29 10 9 45 45 H 1.09002 * 109.88470 * 239.29441 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0742 2.5756 0.0000 7 1 3.5228 3.2904 -0.6108 8 6 4.2429 3.1063 1.4482 9 6 5.4764 4.0315 1.2987 10 7 6.3533 3.3387 0.3372 11 6 7.6878 3.4980 0.2351 12 8 8.3111 2.8737 -0.5971 13 6 8.4053 4.4521 1.1550 14 1 8.0086 5.4578 1.0166 15 6 8.1982 4.0227 2.5846 16 1 7.7863 4.7165 3.3025 17 6 8.5347 2.7442 2.9761 18 7 9.0726 1.9119 2.1115 19 14 8.2264 2.1942 4.7345 20 1 6.7758 2.2920 5.0366 21 1 8.6731 0.7876 4.8988 22 1 8.9859 3.0663 5.6662 23 6 9.8781 4.4452 0.8362 24 6 10.3018 4.5441 -0.4759 25 6 11.6528 4.5384 -0.7683 26 6 12.5803 4.4341 0.2515 27 6 12.1566 4.3352 1.5636 28 6 10.8055 4.3409 1.8560 29 6 5.5303 2.4501 -0.4961 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9375 0.4567 0.0005 34 1 4.4479 2.2908 2.1418 35 1 3.3657 3.6723 1.7615 36 1 5.9817 4.1478 2.2575 37 1 5.1764 5.0032 0.9066 38 1 9.3090 1.0123 2.3868 39 1 9.5774 4.6306 -1.2722 40 1 11.9838 4.6153 -1.7934 41 1 13.6358 4.4292 0.0230 42 1 12.8812 4.2533 2.3603 43 1 10.4745 4.2632 2.8810 44 1 5.5957 2.7553 -1.5404 45 1 5.8697 1.4200 -0.3869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417579513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:58 Heat of formation + Delta-G solvation = -77.318238 kcal Electronic energy + Delta-G solvation = -29134.957189 eV Core-core repulsion = 25117.888074 eV Total energy + Delta-G solvation = -4017.069115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55975 -39.33460 -38.15984 -36.95279 -36.03946 -34.10952 -33.65876 -30.87253 -30.13753 -29.67586 -28.70305 -27.65785 -26.75177 -24.18496 -22.72144 -21.93222 -21.28177 -20.68246 -20.29692 -18.88261 -18.39280 -17.19755 -16.89146 -16.51713 -15.87484 -15.52748 -15.37015 -14.89608 -14.60331 -14.20516 -14.10105 -13.76504 -13.64650 -13.46960 -13.28871 -12.86934 -12.44022 -12.31213 -12.22832 -12.04247 -11.85524 -11.60251 -11.58162 -11.27607 -11.23780 -10.96962 -10.91858 -10.83385 -10.74421 -10.59773 -10.34735 -10.06788 -9.70084 -9.42061 -9.19168 -8.73577 -8.37550 -7.72099 -7.67814 -7.41240 -6.18111 -4.32713 2.08514 2.53663 2.60797 2.75048 3.16478 3.24516 3.26035 3.86786 4.08772 4.24771 4.35508 4.66378 4.91635 4.96572 5.00577 5.04031 5.09706 5.23742 5.29516 5.55680 5.65719 5.85322 5.87087 5.95233 6.00036 6.04002 6.09047 6.20580 6.31675 6.36158 6.44684 6.54277 6.61677 6.67138 6.74370 6.86544 7.12240 7.18918 7.27984 7.34345 7.54528 7.62198 7.64934 7.76264 8.14939 8.24935 8.25636 8.52958 8.72478 9.31039 9.58994 10.82150 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.003442 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.752694 B = 8133.435624 C = 9129.526244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.375 6.375 3 C 0.648 3.352 4 O -0.573 6.573 5 N -0.697 5.697 6 C 0.149 3.851 7 H 0.103 0.897 8 C -0.144 4.144 9 C 0.101 3.899 10 N -0.616 5.616 11 C 0.568 3.432 12 O -0.544 6.544 13 C 0.063 3.937 14 H 0.057 0.943 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.076 3.924 18 N -0.840 5.840 19 Si 0.883 3.117 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.016 4.016 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.064 4.064 29 C 0.110 3.890 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 -0.217 -2.373 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.288 6.288 3 C 0.401 3.599 4 O -0.462 6.462 5 N -0.355 5.355 6 C 0.045 3.955 7 H 0.121 0.879 8 C -0.184 4.184 9 C -0.023 4.023 10 N -0.353 5.353 11 C 0.360 3.640 12 O -0.420 6.420 13 C 0.042 3.958 14 H 0.075 0.925 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.472 5.472 19 Si 0.711 3.289 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.017 4.017 24 C -0.118 4.118 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.166 4.166 28 C -0.082 4.082 29 C -0.014 4.014 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.146 0.854 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.866 -0.289 -2.883 10.283 hybrid contribution -0.103 -1.192 0.990 1.553 sum -9.969 -1.481 -1.893 10.254 Atomic orbital electron populations 1.23167 0.74539 1.03312 1.02692 1.86251 1.24119 1.31283 1.87183 1.18110 0.83470 0.82098 0.76264 1.90990 1.64629 1.34798 1.55814 1.44707 1.02893 1.10454 1.77471 1.22049 0.92463 0.82684 0.98284 0.87895 1.23238 0.98797 1.00471 0.95845 1.22436 0.89497 0.93795 0.96559 1.48182 1.06581 1.44396 1.36111 1.20893 0.78343 0.82806 0.81955 1.90554 1.64580 1.48630 1.38204 1.17827 0.89031 0.93719 0.95272 0.92478 1.20584 1.46096 0.98184 0.92678 0.91347 1.25034 0.94242 0.96800 0.97139 1.70058 1.37174 1.06277 1.33671 0.86779 0.78945 0.78032 0.85193 1.19967 1.21285 1.19869 1.19804 0.95974 0.94185 0.91740 1.20966 0.94715 0.99541 0.96600 1.20821 0.93712 1.04007 0.97712 1.20778 0.97922 1.04043 0.93492 1.20991 0.96209 1.03730 0.95673 1.21142 0.91122 0.95395 1.00518 1.21755 0.88013 0.96387 0.95282 0.91911 0.88120 0.91865 0.75572 0.90371 0.90027 0.86947 0.92760 0.92399 0.87555 0.88099 0.88211 0.88045 0.85398 0.91597 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -4.48 10.62 -40.32 -0.43 -4.91 16 3 C 0.65 9.01 8.75 54.06 0.47 9.48 16 4 O -0.57 -9.38 15.86 -19.28 -0.31 -9.68 16 5 N -0.70 -8.99 5.21 -56.93 -0.30 -9.28 16 6 C 0.15 2.07 3.22 -66.09 -0.21 1.86 16 7 H 0.10 1.42 7.70 -51.93 -0.40 1.02 16 8 C -0.14 -2.09 6.77 -24.58 -0.17 -2.26 16 9 C 0.10 1.65 6.59 -2.52 -0.02 1.63 16 10 N -0.62 -11.89 3.32 -170.51 -0.57 -12.45 16 11 C 0.57 13.11 5.51 -10.98 -0.06 13.05 16 12 O -0.54 -14.23 14.29 5.56 0.08 -14.15 16 13 C 0.06 1.42 2.32 -94.08 -0.22 1.21 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.54 -12.42 4.80 -34.44 -0.17 -12.59 16 16 H 0.07 1.52 7.70 -52.49 -0.40 1.12 16 17 C 0.08 1.84 3.99 -17.82 -0.07 1.77 16 18 N -0.84 -22.13 10.89 55.43 0.60 -21.52 16 19 Si 0.88 19.10 29.54 -169.99 -5.02 14.08 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C -0.02 -0.38 4.52 -104.63 -0.47 -0.85 16 24 C -0.10 -2.24 8.20 -39.59 -0.32 -2.56 16 25 C -0.14 -2.93 10.05 -39.58 -0.40 -3.33 16 26 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 27 C -0.15 -3.04 10.05 -39.58 -0.40 -3.44 16 28 C -0.06 -1.46 8.20 -39.58 -0.32 -1.78 16 29 C 0.11 1.80 6.63 -3.06 -0.02 1.78 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.41 4.69 8.43 -40.82 -0.34 4.35 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.11 2.05 5.51 -51.93 -0.29 1.76 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 39 H 0.11 2.36 7.03 -52.49 -0.37 1.99 16 40 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.13 3.01 6.02 -52.49 -0.32 2.69 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -30.73 368.93 -8.38 -39.12 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.30 Total: 10.93 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.71 Total: 2.31 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.26 Total: -43.26 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.65 Total: -28.74 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.73 -8.38 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417579513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.200 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds