Wall clock time and date at job start Sat Apr 11 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34645 * 117.00006 * 2 1 4 4 O 1.21502 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99897 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00074 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.63915 * 323.31731 * 6 5 3 8 8 C 1.55159 * 110.71547 * 86.45813 * 6 5 3 9 9 C 1.54910 * 101.57851 * 153.87062 * 8 6 5 10 10 N 1.47428 * 104.83077 * 322.98588 * 9 8 6 11 11 C 1.34772 * 125.64974 * 204.09464 * 10 9 8 12 12 O 1.21281 * 120.00557 * 180.02562 * 11 10 9 13 13 C 1.50708 * 119.99700 * 0.02792 * 11 10 9 14 14 H 1.08997 * 109.47077 * 27.72370 * 13 11 10 15 15 C 1.50705 * 109.46972 * 267.71796 * 13 11 10 16 16 H 1.07997 * 119.99944 * 329.67970 * 15 13 11 17 17 C 1.37876 * 119.99755 * 149.67574 * 15 13 11 18 18 N 1.31514 * 120.00104 * 175.75116 * 17 15 13 19 19 Si 1.86807 * 120.00132 * 355.74595 * 17 15 13 20 20 H 1.48496 * 109.47090 * 275.18498 * 19 17 15 21 21 H 1.48497 * 109.47082 * 155.18533 * 19 17 15 22 22 H 1.48506 * 109.46726 * 35.18479 * 19 17 15 23 23 C 1.50701 * 109.46828 * 147.72392 * 13 11 10 24 24 C 1.38234 * 120.00081 * 67.27759 * 23 13 11 25 25 C 1.38237 * 119.99727 * 179.78790 * 24 23 13 26 26 C 1.38236 * 119.99918 * 0.43804 * 25 24 23 27 27 C 1.38236 * 120.00176 * 359.81361 * 26 25 24 28 28 C 1.38225 * 119.99842 * 359.97438 * 27 26 25 29 29 C 1.47018 * 108.70273 * 24.36148 * 10 9 8 30 30 H 1.08999 * 109.47237 * 300.00492 * 1 2 3 31 31 H 1.09007 * 109.46712 * 60.00242 * 1 2 3 32 32 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 33 33 H 0.97007 * 120.00232 * 0.02562 * 5 3 2 34 34 H 1.08998 * 111.00622 * 35.79134 * 8 6 5 35 35 H 1.09004 * 111.03555 * 271.95143 * 8 6 5 36 36 H 1.09002 * 110.36315 * 204.15544 * 9 8 6 37 37 H 1.08996 * 110.37056 * 81.82992 * 9 8 6 38 38 H 0.96993 * 120.00384 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.00488 * 359.97438 * 24 23 13 40 40 H 1.08004 * 119.99897 * 180.27366 * 25 24 23 41 41 H 1.08007 * 119.99613 * 179.83561 * 26 25 24 42 42 H 1.08002 * 119.99754 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.00266 * 180.02562 * 28 27 26 44 44 H 1.08996 * 109.88586 * 118.12903 * 29 10 9 45 45 H 1.09001 * 109.88322 * 239.29684 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0743 2.5755 0.0000 7 1 3.5201 3.2888 -0.6101 8 6 4.2430 3.1062 1.4482 9 6 5.4765 4.0313 1.2986 10 7 6.3534 3.3386 0.3371 11 6 7.6878 3.4979 0.2349 12 8 8.3112 2.8735 -0.5972 13 6 8.4053 4.4519 1.1549 14 1 7.8547 4.5366 2.0917 15 6 8.4967 5.8068 0.5014 16 1 8.5513 5.8849 -0.5743 17 6 8.5104 6.9467 1.2770 18 7 8.6742 8.1236 0.7135 19 14 8.2964 6.8193 3.1284 20 1 6.8489 6.7795 3.4578 21 1 8.9203 7.9983 3.7811 22 1 8.9498 5.5789 3.6180 23 6 9.7929 3.9337 1.4328 24 6 10.7288 3.8848 0.4167 25 6 12.0029 3.4135 0.6727 26 6 12.3383 2.9828 1.9427 27 6 11.4008 3.0268 2.9576 28 6 10.1281 3.5021 2.7026 29 6 5.5303 2.4500 -0.4962 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.9375 0.4566 0.0005 34 1 4.4480 2.2907 2.1417 35 1 3.3659 3.6722 1.7621 36 1 5.9819 4.1476 2.2574 37 1 5.1765 5.0031 0.9067 38 1 8.6842 8.9254 1.2591 39 1 10.4656 4.2175 -0.5765 40 1 12.7355 3.3794 -0.1202 41 1 13.3330 2.6121 2.1420 42 1 11.6630 2.6907 3.9499 43 1 9.3957 3.5370 3.4956 44 1 5.5958 2.7552 -1.5405 45 1 5.8696 1.4199 -0.3869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417579514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:00 Heat of formation + Delta-G solvation = -81.398128 kcal Electronic energy + Delta-G solvation = -28597.256883 eV Core-core repulsion = 24580.010850 eV Total energy + Delta-G solvation = -4017.246032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74324 -39.72582 -38.49268 -37.34884 -36.32739 -34.39609 -33.61852 -31.55325 -30.51303 -30.12570 -29.02015 -27.91695 -27.20189 -24.10295 -22.87040 -22.18749 -21.84296 -20.99331 -20.69207 -19.03034 -18.61820 -17.37386 -17.08839 -16.68089 -16.45790 -16.09346 -15.78737 -15.00798 -14.71733 -14.55693 -14.28013 -14.13890 -13.89324 -13.77215 -13.29697 -13.17318 -12.75670 -12.69054 -12.47354 -12.34891 -12.24219 -12.10206 -11.92531 -11.65789 -11.53084 -11.18445 -11.05563 -10.95829 -10.92832 -10.77699 -10.50614 -10.26106 -9.96815 -9.59898 -9.41929 -8.93164 -8.75866 -8.23747 -8.11726 -7.82962 -6.28669 -4.32676 1.90117 2.13103 2.21106 2.59899 3.12690 3.25130 3.26644 3.41338 3.51816 4.05048 4.23316 4.36196 4.57113 4.61495 4.86592 4.94437 4.99013 5.04169 5.16168 5.22129 5.34561 5.50625 5.54715 5.60538 5.70035 5.74134 5.78893 5.84658 5.95218 5.99750 6.05034 6.15500 6.23949 6.25649 6.32036 6.44265 6.65914 6.76208 6.86860 7.14377 7.16362 7.27874 7.28799 7.60814 7.79540 7.98243 8.09868 8.26512 8.73056 8.92789 9.28349 10.82513 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.003260 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.760219 B = 8588.085217 C = 9559.321802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.648 3.352 4 O -0.569 6.569 5 N -0.698 5.698 6 C 0.150 3.850 7 H 0.110 0.890 8 C -0.146 4.146 9 C 0.105 3.895 10 N -0.620 5.620 11 C 0.556 3.444 12 O -0.549 6.549 13 C 0.042 3.958 14 H 0.056 0.944 15 C -0.507 4.507 16 H 0.082 0.918 17 C 0.086 3.914 18 N -0.882 5.882 19 Si 0.857 3.143 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.249 1.249 23 C -0.043 4.043 24 C -0.064 4.064 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.131 4.131 29 C 0.107 3.893 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.408 0.592 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.269 0.731 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 -14.229 2.979 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.401 3.599 4 O -0.457 6.457 5 N -0.357 5.357 6 C 0.046 3.954 7 H 0.128 0.872 8 C -0.186 4.186 9 C -0.018 4.018 10 N -0.357 5.357 11 C 0.348 3.652 12 O -0.426 6.426 13 C 0.020 3.980 14 H 0.074 0.926 15 C -0.544 4.544 16 H 0.100 0.900 17 C -0.119 4.119 18 N -0.517 5.517 19 Si 0.683 3.317 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.173 1.173 23 C -0.044 4.044 24 C -0.082 4.082 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.149 4.149 29 C -0.017 4.017 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.244 0.756 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.078 -13.856 2.536 17.320 hybrid contribution -0.053 -0.057 1.051 1.053 sum -10.130 -13.913 3.586 17.580 Atomic orbital electron populations 1.23192 0.74326 1.03416 1.02817 1.86242 1.24269 1.31151 1.87136 1.18101 0.83392 0.82189 0.76258 1.91017 1.64550 1.34807 1.55362 1.44634 1.03017 1.10168 1.77916 1.22018 0.92386 0.83070 0.97917 0.87233 1.23283 0.98844 1.00146 0.96301 1.22292 0.89507 0.96053 0.93953 1.48391 1.06594 1.44174 1.36517 1.20982 0.79082 0.80597 0.84584 1.90594 1.65461 1.48471 1.38048 1.18300 0.89423 0.94800 0.95475 0.92623 1.20437 1.52767 0.85790 0.95427 0.90018 1.24942 0.93541 0.95000 0.98371 1.69852 1.47467 0.98076 1.36338 0.87145 0.79123 0.79248 0.86180 1.19621 1.21043 1.17328 1.20174 0.97277 0.94183 0.92778 1.20985 0.91822 0.95759 0.99658 1.21081 0.96804 1.00814 0.96506 1.20891 0.98720 1.02522 0.93711 1.20876 0.94044 1.01986 0.98392 1.21041 0.96668 1.00475 0.96721 1.21868 0.88114 0.95665 0.96065 0.91803 0.91801 0.88021 0.75613 0.90241 0.89172 0.90160 0.90159 0.92095 0.85778 0.87062 0.87354 0.87324 0.87225 0.90531 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.78 10.62 -40.34 -0.43 -4.20 16 3 C 0.65 7.76 8.75 54.05 0.47 8.23 16 4 O -0.57 -8.50 15.86 -19.27 -0.31 -8.81 16 5 N -0.70 -7.18 5.21 -56.93 -0.30 -7.48 16 6 C 0.15 1.76 3.23 -66.09 -0.21 1.54 16 7 H 0.11 1.37 7.69 -51.93 -0.40 0.97 16 8 C -0.15 -1.72 6.77 -24.58 -0.17 -1.88 16 9 C 0.11 1.56 6.66 -2.53 -0.02 1.55 16 10 N -0.62 -10.68 3.33 -170.51 -0.57 -11.24 16 11 C 0.56 11.85 6.85 -10.98 -0.08 11.77 16 12 O -0.55 -12.92 15.52 5.56 0.09 -12.84 16 13 C 0.04 0.93 1.50 -94.07 -0.14 0.79 16 14 H 0.06 1.17 3.66 -51.93 -0.19 0.98 16 15 C -0.51 -13.21 8.16 -34.44 -0.28 -13.49 16 16 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 17 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 18 N -0.88 -25.24 13.96 55.43 0.77 -24.47 16 19 Si 0.86 19.29 26.81 -169.99 -4.56 14.73 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.25 -5.28 4.91 56.52 0.28 -5.00 16 23 C -0.04 -0.95 4.42 -104.62 -0.46 -1.41 16 24 C -0.06 -1.41 8.07 -39.58 -0.32 -1.73 16 25 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 26 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 27 C -0.13 -2.38 10.05 -39.59 -0.40 -2.77 16 28 C -0.13 -2.59 8.57 -39.58 -0.34 -2.93 16 29 C 0.11 1.46 6.63 -3.06 -0.02 1.44 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.41 3.33 8.43 -40.82 -0.34 2.99 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.19 6.73 -51.93 -0.35 0.84 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 2.90 7.54 -52.49 -0.40 2.51 16 40 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 2.00 7.23 -52.49 -0.38 1.62 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -32.86 372.69 -7.83 -40.69 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.37 Total: 8.95 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.79 Total: -0.96 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.09 Total: -43.19 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.65 Total: -25.85 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.56 Total: 14.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.86 -7.83 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417579514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.709 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds