Wall clock time and date at job start Sat Apr 11 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34645 * 117.00006 * 2 1 4 4 O 1.21502 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99897 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00074 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.63915 * 323.31731 * 6 5 3 8 8 C 1.55159 * 110.71547 * 86.45813 * 6 5 3 9 9 C 1.54910 * 101.57851 * 153.87062 * 8 6 5 10 10 N 1.47428 * 104.83077 * 322.98588 * 9 8 6 11 11 C 1.34772 * 125.64974 * 204.09464 * 10 9 8 12 12 O 1.21281 * 120.00557 * 180.02562 * 11 10 9 13 13 C 1.50708 * 119.99700 * 0.02792 * 11 10 9 14 14 H 1.08997 * 109.47077 * 27.72370 * 13 11 10 15 15 C 1.50705 * 109.46972 * 267.71796 * 13 11 10 16 16 H 1.07997 * 119.99944 * 329.67970 * 15 13 11 17 17 C 1.37876 * 119.99755 * 149.67574 * 15 13 11 18 18 N 1.31514 * 120.00104 * 175.75116 * 17 15 13 19 19 Si 1.86807 * 120.00132 * 355.74595 * 17 15 13 20 20 H 1.48496 * 109.47090 * 275.18498 * 19 17 15 21 21 H 1.48497 * 109.47082 * 155.18533 * 19 17 15 22 22 H 1.48506 * 109.46726 * 35.18479 * 19 17 15 23 23 C 1.50701 * 109.46828 * 147.72392 * 13 11 10 24 24 C 1.38234 * 120.00081 * 67.27759 * 23 13 11 25 25 C 1.38237 * 119.99727 * 179.78790 * 24 23 13 26 26 C 1.38236 * 119.99918 * 0.43804 * 25 24 23 27 27 C 1.38236 * 120.00176 * 359.81361 * 26 25 24 28 28 C 1.38225 * 119.99842 * 359.97438 * 27 26 25 29 29 C 1.47018 * 108.70273 * 24.36148 * 10 9 8 30 30 H 1.08999 * 109.47237 * 300.00492 * 1 2 3 31 31 H 1.09007 * 109.46712 * 60.00242 * 1 2 3 32 32 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 33 33 H 0.97007 * 120.00232 * 0.02562 * 5 3 2 34 34 H 1.08998 * 111.00622 * 35.79134 * 8 6 5 35 35 H 1.09004 * 111.03555 * 271.95143 * 8 6 5 36 36 H 1.09002 * 110.36315 * 204.15544 * 9 8 6 37 37 H 1.08996 * 110.37056 * 81.82992 * 9 8 6 38 38 H 0.96993 * 120.00384 * 180.02562 * 18 17 15 39 39 H 1.07993 * 120.00488 * 359.97438 * 24 23 13 40 40 H 1.08004 * 119.99897 * 180.27366 * 25 24 23 41 41 H 1.08007 * 119.99613 * 179.83561 * 26 25 24 42 42 H 1.08002 * 119.99754 * 180.02562 * 27 26 25 43 43 H 1.08002 * 120.00266 * 180.02562 * 28 27 26 44 44 H 1.08996 * 109.88586 * 118.12903 * 29 10 9 45 45 H 1.09001 * 109.88322 * 239.29684 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0743 2.5755 0.0000 7 1 3.5201 3.2888 -0.6101 8 6 4.2430 3.1062 1.4482 9 6 5.4765 4.0313 1.2986 10 7 6.3534 3.3386 0.3371 11 6 7.6878 3.4979 0.2349 12 8 8.3112 2.8735 -0.5972 13 6 8.4053 4.4519 1.1549 14 1 7.8547 4.5366 2.0917 15 6 8.4967 5.8068 0.5014 16 1 8.5513 5.8849 -0.5743 17 6 8.5104 6.9467 1.2770 18 7 8.6742 8.1236 0.7135 19 14 8.2964 6.8193 3.1284 20 1 6.8489 6.7795 3.4578 21 1 8.9203 7.9983 3.7811 22 1 8.9498 5.5789 3.6180 23 6 9.7929 3.9337 1.4328 24 6 10.7288 3.8848 0.4167 25 6 12.0029 3.4135 0.6727 26 6 12.3383 2.9828 1.9427 27 6 11.4008 3.0268 2.9576 28 6 10.1281 3.5021 2.7026 29 6 5.5303 2.4500 -0.4962 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.9375 0.4566 0.0005 34 1 4.4480 2.2907 2.1417 35 1 3.3659 3.6722 1.7621 36 1 5.9819 4.1476 2.2574 37 1 5.1765 5.0031 0.9067 38 1 8.6842 8.9254 1.2591 39 1 10.4656 4.2175 -0.5765 40 1 12.7355 3.3794 -0.1202 41 1 13.3330 2.6121 2.1420 42 1 11.6630 2.6907 3.9499 43 1 9.3957 3.5370 3.4956 44 1 5.5958 2.7552 -1.5405 45 1 5.8696 1.4199 -0.3869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417579514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:59 Heat of formation + Delta-G solvation = -104.301205 kcal Electronic energy + Delta-G solvation = -28598.250035 eV Core-core repulsion = 24580.010850 eV Total energy + Delta-G solvation = -4018.239184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72756 -41.12612 -39.84303 -38.66144 -37.36107 -35.62335 -35.35450 -33.37901 -31.73259 -31.60033 -30.19406 -29.27400 -28.14645 -25.78827 -24.31663 -23.34388 -23.16633 -22.27238 -21.84233 -20.20829 -19.84375 -19.11096 -18.29863 -17.98729 -17.54644 -17.45604 -16.99886 -16.49384 -16.34464 -15.87085 -15.58175 -15.27788 -15.05591 -14.83797 -14.74289 -14.54348 -14.28404 -14.13793 -13.93280 -13.62862 -13.53885 -13.29280 -12.99832 -12.90571 -12.87738 -12.70213 -12.65061 -12.12114 -12.04340 -11.91431 -11.79098 -11.76182 -11.63975 -11.47896 -10.76913 -10.63450 -10.35474 -9.65924 -9.61232 -9.36764 -8.34021 -6.43770 0.63290 0.70941 1.05732 1.35319 1.41544 1.50404 1.67219 1.79255 2.12392 2.33768 2.97819 3.14003 3.22546 3.30745 3.50594 3.96659 4.07388 4.09243 4.16553 4.24356 4.27094 4.36516 4.37094 4.39528 4.42987 4.48772 4.58001 4.65287 4.75279 4.76414 4.83979 4.91599 4.93314 5.01505 5.21309 5.23644 5.32143 5.34580 5.37969 5.42540 5.70799 5.76761 5.97092 6.18602 6.28835 6.31167 6.48762 6.62020 7.21040 7.22692 7.29441 8.81319 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.003260 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.760219 B = 8588.085217 C = 9559.321802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.373 6.373 3 C 0.649 3.351 4 O -0.602 6.602 5 N -0.686 5.686 6 C 0.163 3.837 7 H 0.102 0.898 8 C -0.130 4.130 9 C 0.097 3.903 10 N -0.620 5.620 11 C 0.548 3.452 12 O -0.582 6.582 13 C 0.046 3.954 14 H 0.073 0.927 15 C -0.503 4.503 16 H 0.023 0.977 17 C 0.031 3.969 18 N -0.937 5.937 19 Si 0.919 3.081 20 H -0.245 1.245 21 H -0.292 1.292 22 H -0.223 1.223 23 C -0.071 4.071 24 C -0.098 4.098 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.128 4.128 28 C -0.141 4.141 29 C 0.106 3.894 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.136 0.864 33 H 0.421 0.579 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.270 0.730 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.129 0.871 44 H 0.066 0.934 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 -16.971 6.410 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.402 3.598 4 O -0.493 6.493 5 N -0.346 5.346 6 C 0.058 3.942 7 H 0.120 0.880 8 C -0.169 4.169 9 C -0.026 4.026 10 N -0.354 5.354 11 C 0.339 3.661 12 O -0.462 6.462 13 C 0.025 3.975 14 H 0.090 0.910 15 C -0.541 4.541 16 H 0.042 0.958 17 C -0.168 4.168 18 N -0.575 5.575 19 Si 0.741 3.259 20 H -0.169 1.169 21 H -0.219 1.219 22 H -0.146 1.146 23 C -0.073 4.073 24 C -0.116 4.116 25 C -0.157 4.157 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.159 4.159 29 C -0.018 4.018 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.259 0.741 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.085 0.915 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.433 -16.657 5.966 20.540 hybrid contribution 0.063 0.718 -0.155 0.738 sum -10.370 -15.939 5.811 19.884 Atomic orbital electron populations 1.23512 0.72667 1.05639 1.02641 1.86260 1.25855 1.29828 1.86704 1.18202 0.83530 0.82314 0.75759 1.91000 1.65327 1.36035 1.56906 1.44431 1.02764 1.10083 1.77340 1.21736 0.90827 0.83713 0.97898 0.88039 1.23205 0.97404 0.99951 0.96342 1.22490 0.90411 0.96307 0.93419 1.48349 1.05847 1.44146 1.37028 1.20820 0.80485 0.80545 0.84211 1.90561 1.66702 1.49802 1.39131 1.18175 0.90714 0.92823 0.95803 0.90956 1.20377 1.52309 0.88471 0.92912 0.95827 1.25831 0.92952 0.94109 1.03926 1.70020 1.49803 0.99122 1.38526 0.86164 0.80720 0.79816 0.79230 1.16874 1.21886 1.14603 1.20189 0.96647 0.96242 0.94173 1.20887 0.93990 0.98343 0.98402 1.21358 0.95767 1.00143 0.98452 1.21366 1.00547 1.00675 0.92424 1.21377 0.92831 1.00008 1.00312 1.21307 0.98366 1.00474 0.95780 1.21986 0.88969 0.95699 0.95108 0.91909 0.92128 0.84615 0.74127 0.88449 0.88148 0.89604 0.91283 0.92107 0.89587 0.85146 0.83229 0.83152 0.85344 0.91519 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.56 113.37 1.20 1.80 16 2 O -0.37 -6.75 10.62 -55.55 -0.59 -7.34 16 3 C 0.65 14.44 8.75 129.79 1.14 15.58 16 4 O -0.60 -17.31 15.86 19.83 0.31 -17.00 16 5 N -0.69 -12.80 5.21 -564.44 -2.94 -15.74 16 6 C 0.16 3.62 3.23 46.18 0.15 3.77 16 7 H 0.10 2.49 7.69 -2.39 -0.02 2.47 16 8 C -0.13 -2.77 6.77 31.99 0.22 -2.55 16 9 C 0.10 2.78 6.66 86.85 0.58 3.35 16 10 N -0.62 -21.48 3.33 -811.78 -2.70 -24.18 16 11 C 0.55 24.20 6.85 87.66 0.60 24.80 16 12 O -0.58 -28.87 15.52 -3.03 -0.05 -28.92 16 13 C 0.05 2.12 1.50 -13.03 -0.02 2.10 16 14 H 0.07 2.97 3.66 -2.39 -0.01 2.96 16 15 C -0.50 -27.84 8.16 25.60 0.21 -27.63 16 16 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 17 C 0.03 1.73 5.47 84.65 0.46 2.19 16 18 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 19 Si 0.92 39.37 26.81 68.60 1.84 41.21 16 20 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.22 -8.55 4.91 99.48 0.49 -8.06 16 23 C -0.07 -3.16 4.42 -19.86 -0.09 -3.25 16 24 C -0.10 -4.46 8.07 22.27 0.18 -4.28 16 25 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16 26 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 27 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 28 C -0.14 -5.19 8.57 22.27 0.19 -5.00 16 29 C 0.11 2.86 6.63 86.73 0.57 3.44 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.42 5.87 8.43 -92.70 -0.78 5.09 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.38 6.73 -2.39 -0.02 2.36 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.09 4.44 7.54 -2.91 -0.02 4.42 16 40 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.13 4.15 7.23 -2.91 -0.02 4.13 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 2.06 7.69 -2.39 -0.02 2.04 16 Total: -1.00 -77.20 372.69 2.25 -74.95 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.02 Total: 31.32 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.06 Total: 1.84 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -5.34 Total: -96.07 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -0.32 Total: -53.25 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.84 Total: 41.21 kcal Total: -77.20 2.25 -74.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417579514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.347 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds