Wall clock time and date at job start Sat Apr 11 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99633 * 2 1 4 4 H 1.48494 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46805 * 300.00253 * 3 2 1 6 6 H 1.48504 * 109.46847 * 60.00094 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00008 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00003 * 169.99723 * 10 9 7 12 12 C 1.53240 * 109.34078 * 187.25295 * 11 10 9 13 13 N 1.47079 * 108.52345 * 306.17450 * 12 11 10 14 14 C 1.34775 * 120.88320 * 231.20488 * 13 12 11 15 15 O 1.21592 * 120.00017 * 174.16594 * 14 13 12 16 16 C 1.47585 * 119.99769 * 354.17017 * 14 13 12 17 17 C 1.39756 * 120.07440 * 328.00090 * 16 14 13 18 18 C 1.37663 * 119.92445 * 179.73955 * 17 16 14 19 19 C 1.39132 * 120.07098 * 0.53536 * 18 17 16 20 20 N 1.39433 * 119.92634 * 179.69649 * 19 18 17 21 21 C 1.34773 * 120.00609 * 146.56714 * 20 19 18 22 22 N 1.34769 * 120.00587 * 174.65665 * 21 20 19 23 23 O 1.21586 * 119.99505 * 354.65824 * 21 20 19 24 24 C 1.39132 * 120.15455 * 359.71924 * 19 18 17 25 25 C 1.37670 * 120.07223 * 0.02562 * 24 19 18 26 26 C 1.47079 * 118.23835 * 51.18356 * 13 12 11 27 27 C 1.46896 * 111.00270 * 294.30408 * 10 9 7 28 28 H 0.97005 * 120.00376 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46737 * 60.00110 * 9 7 2 30 30 H 1.09000 * 109.46768 * 299.99740 * 9 7 2 31 31 H 1.08998 * 109.49510 * 307.21731 * 11 10 9 32 32 H 1.09003 * 109.49177 * 67.29610 * 11 10 9 33 33 H 1.09004 * 109.62576 * 65.88385 * 12 11 10 34 34 H 1.08996 * 109.63274 * 186.45998 * 12 11 10 35 35 H 1.07996 * 120.03583 * 359.97438 * 17 16 14 36 36 H 1.07995 * 119.95982 * 180.25416 * 18 17 16 37 37 H 0.97004 * 119.99969 * 326.56705 * 20 19 18 38 38 H 0.97006 * 119.99811 * 359.97438 * 22 21 20 39 39 H 0.97002 * 120.00506 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.96614 * 180.02562 * 24 19 18 41 41 H 1.07997 * 120.03937 * 180.02562 * 25 24 19 42 42 H 1.08996 * 109.63325 * 189.11185 * 26 13 12 43 43 H 1.08999 * 109.63074 * 68.52079 * 26 13 12 44 44 H 1.09003 * 109.48958 * 292.70922 * 27 10 9 45 45 H 1.09008 * 109.49376 * 52.75469 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2387 12 6 2.5641 -6.0031 0.4115 13 7 3.4619 -5.9861 -0.7533 14 6 3.7120 -7.1121 -1.4504 15 8 4.3704 -7.0614 -2.4714 16 6 3.1866 -8.4066 -0.9746 17 6 3.0418 -8.6427 0.3952 18 6 2.5463 -9.8493 0.8354 19 6 2.2004 -10.8372 -0.0813 20 7 1.7049 -12.0605 0.3682 21 6 0.7865 -12.7246 -0.3611 22 7 0.3871 -13.9550 0.0168 23 8 0.3183 -12.2136 -1.3601 24 6 2.3483 -10.6074 -1.4455 25 6 2.8383 -9.4010 -1.8927 26 6 4.0793 -4.7076 -1.1375 27 6 2.9769 -3.6490 -1.2493 28 1 -0.4851 0.8401 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 0.9162 -4.8190 1.1422 32 1 0.8798 -5.1264 -0.6111 33 1 3.1397 -5.8263 1.3202 34 1 2.0636 -6.9693 0.4740 35 1 3.3147 -7.8781 1.1074 36 1 2.4303 -10.0309 1.8937 37 1 2.0211 -12.4336 1.2059 38 1 0.7609 -14.3629 0.8137 39 1 -0.2742 -14.4329 -0.5079 40 1 2.0785 -11.3761 -2.1544 41 1 2.9525 -9.2231 -2.9518 42 1 4.5804 -4.8173 -2.0992 43 1 4.8005 -4.4063 -0.3778 44 1 2.3151 -3.8992 -2.0784 45 1 3.4269 -2.6718 -1.4253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418960879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:02 Heat of formation + Delta-G solvation = -8.571446 kcal Electronic energy + Delta-G solvation = -27956.865996 eV Core-core repulsion = 23975.070717 eV Total energy + Delta-G solvation = -3981.795279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11684 -40.22982 -38.46056 -37.37804 -35.17448 -34.49294 -34.08436 -32.41417 -31.45482 -30.85507 -29.69570 -28.10152 -25.68543 -24.11899 -23.68664 -22.64829 -22.17667 -21.35257 -20.60521 -19.09212 -18.89738 -18.48439 -17.26445 -16.63074 -16.36090 -16.12214 -15.74851 -15.27252 -14.95757 -14.75503 -14.63100 -14.46972 -14.32378 -14.12711 -13.79497 -13.53725 -13.45729 -13.14562 -12.66705 -12.63407 -12.16140 -11.86213 -11.56034 -11.26167 -11.15806 -10.87663 -10.82991 -10.70834 -10.63250 -10.52914 -10.46416 -10.24525 -9.88500 -9.67995 -9.26520 -9.11609 -8.53688 -8.45229 -8.31494 -7.31366 -6.05120 -4.06872 0.70096 1.17584 2.25580 2.54081 2.90655 3.14180 3.30270 3.37844 3.42417 3.68337 3.85758 4.40277 4.51276 4.61874 4.67796 4.82902 5.08484 5.15158 5.20957 5.30039 5.30610 5.41714 5.53133 5.64725 5.75148 5.78934 5.83795 5.86698 6.00750 6.02794 6.14307 6.21768 6.23464 6.28692 6.34682 6.43255 6.56076 6.69230 6.77642 7.23328 7.29463 7.30102 7.56536 7.76081 8.01450 8.02218 8.13109 8.28316 8.48921 9.00721 9.57713 11.05717 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.002254 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.551443 B =12419.917985 C =13039.791190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.038 3.962 12 C 0.098 3.902 13 N -0.601 5.601 14 C 0.558 3.442 15 O -0.546 6.546 16 C -0.144 4.144 17 C -0.071 4.071 18 C -0.156 4.156 19 C 0.183 3.817 20 N -0.684 5.684 21 C 0.704 3.296 22 N -0.861 5.861 23 O -0.570 6.570 24 C -0.129 4.129 25 C -0.042 4.042 26 C 0.115 3.885 27 C 0.051 3.949 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.409 0.591 38 H 0.399 0.601 39 H 0.419 0.581 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -28.529 5.013 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.091 4.091 12 C -0.025 4.025 13 N -0.334 5.334 14 C 0.347 3.653 15 O -0.425 6.425 16 C -0.147 4.147 17 C -0.090 4.090 18 C -0.177 4.177 19 C 0.087 3.913 20 N -0.332 5.332 21 C 0.402 3.598 22 N -0.430 5.430 23 O -0.445 6.445 24 C -0.149 4.149 25 C -0.061 4.061 26 C -0.007 4.007 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.244 0.756 38 H 0.227 0.773 39 H 0.252 0.748 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.262 -27.783 4.035 28.396 hybrid contribution -0.384 0.235 0.128 0.468 sum 3.879 -27.548 4.163 28.130 Atomic orbital electron populations 1.69968 1.06086 1.26728 1.50951 1.25002 0.94874 0.99388 0.95398 0.86436 0.80081 0.83377 0.77497 1.19607 1.21120 1.21036 1.21181 0.93533 0.89847 1.50109 0.91715 1.19730 0.90016 0.87227 0.96197 1.62101 1.27915 1.02562 1.33490 1.22421 0.94891 0.90791 1.00999 1.22471 0.91992 0.99874 0.88135 1.48105 1.46472 1.08482 1.30318 1.18254 0.80169 0.83639 0.83210 1.90759 1.41030 1.86586 1.24103 1.19935 1.05399 0.95293 0.94115 1.21436 0.96250 0.96502 0.94812 1.20765 1.05133 0.92566 0.99210 1.17619 0.95718 0.84688 0.93246 1.42479 1.43478 1.21123 1.26081 1.15957 0.79353 0.81352 0.83107 1.42971 1.49258 1.17536 1.33211 1.91045 1.58872 1.67785 1.26841 1.21089 1.00896 0.98640 0.94321 1.21098 0.93810 0.91182 1.00054 1.21885 0.95876 0.81434 1.01476 1.22344 0.95192 0.99159 0.91159 0.92944 0.99099 0.95037 0.90010 0.95423 0.90428 0.88809 0.83889 0.85018 0.75583 0.77320 0.74806 0.84188 0.84659 0.89273 0.90777 0.95670 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.00 8.41 -34.44 -0.29 -14.29 16 8 H 0.06 1.76 7.13 -52.48 -0.37 1.38 16 9 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 10 N -0.54 -11.20 4.62 -235.76 -1.09 -12.29 16 11 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 12 C 0.10 1.34 4.85 -3.60 -0.02 1.32 16 13 N -0.60 -9.40 3.01 -173.67 -0.52 -9.92 16 14 C 0.56 8.98 7.42 -12.45 -0.09 8.88 16 15 O -0.55 -10.42 16.20 5.28 0.09 -10.34 16 16 C -0.14 -1.88 5.39 -104.95 -0.57 -2.45 16 17 C -0.07 -0.72 7.38 -39.22 -0.29 -1.01 16 18 C -0.16 -1.30 9.94 -39.46 -0.39 -1.69 16 19 C 0.18 1.72 6.27 -83.74 -0.53 1.19 16 20 N -0.68 -4.35 5.32 -14.22 -0.08 -4.43 16 21 C 0.70 5.69 8.56 -86.93 -0.74 4.94 16 22 N -0.86 -2.85 8.88 27.63 0.25 -2.60 16 23 O -0.57 -7.43 14.85 5.29 0.08 -7.35 16 24 C -0.13 -1.48 8.63 -39.46 -0.34 -1.82 16 25 C -0.04 -0.53 9.59 -39.22 -0.38 -0.91 16 26 C 0.12 1.92 6.61 -3.60 -0.02 1.90 16 27 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 30 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 31 H 0.08 1.34 7.99 -51.93 -0.41 0.92 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.97 7.95 -51.93 -0.41 0.55 16 34 H 0.09 1.09 4.48 -51.93 -0.23 0.86 16 35 H 0.14 1.27 5.64 -52.49 -0.30 0.98 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.41 1.01 8.83 -40.82 -0.36 0.65 16 38 H 0.40 -0.05 8.85 -40.82 -0.36 -0.41 16 39 H 0.42 1.12 8.93 -40.82 -0.36 0.76 16 40 H 0.14 1.68 6.40 -52.49 -0.34 1.34 16 41 H 0.14 1.74 7.95 -52.49 -0.42 1.32 16 42 H 0.09 1.49 7.04 -51.93 -0.37 1.13 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 2.02 6.67 -51.92 -0.35 1.67 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -36.51 366.07 -9.81 -46.32 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.94 Total: 0.40 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -3.82 Total: 4.04 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.71 Total: -55.03 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.16 Total: -17.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.51 -9.81 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418960879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.749 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds