Wall clock time and date at job start Sat Apr 11 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99633 * 2 1 4 4 H 1.48494 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46805 * 300.00253 * 3 2 1 6 6 H 1.48504 * 109.46847 * 60.00094 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00008 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00003 * 169.99723 * 10 9 7 12 12 C 1.53240 * 109.34078 * 187.25295 * 11 10 9 13 13 N 1.47079 * 108.52345 * 306.17450 * 12 11 10 14 14 C 1.34775 * 120.88320 * 231.20488 * 13 12 11 15 15 O 1.21592 * 120.00017 * 174.16594 * 14 13 12 16 16 C 1.47585 * 119.99769 * 354.17017 * 14 13 12 17 17 C 1.39756 * 120.07440 * 328.00090 * 16 14 13 18 18 C 1.37663 * 119.92445 * 179.73955 * 17 16 14 19 19 C 1.39132 * 120.07098 * 0.53536 * 18 17 16 20 20 N 1.39433 * 119.92634 * 179.69649 * 19 18 17 21 21 C 1.34773 * 120.00609 * 146.56714 * 20 19 18 22 22 N 1.34769 * 120.00587 * 174.65665 * 21 20 19 23 23 O 1.21586 * 119.99505 * 354.65824 * 21 20 19 24 24 C 1.39132 * 120.15455 * 359.71924 * 19 18 17 25 25 C 1.37670 * 120.07223 * 0.02562 * 24 19 18 26 26 C 1.47079 * 118.23835 * 51.18356 * 13 12 11 27 27 C 1.46896 * 111.00270 * 294.30408 * 10 9 7 28 28 H 0.97005 * 120.00376 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46737 * 60.00110 * 9 7 2 30 30 H 1.09000 * 109.46768 * 299.99740 * 9 7 2 31 31 H 1.08998 * 109.49510 * 307.21731 * 11 10 9 32 32 H 1.09003 * 109.49177 * 67.29610 * 11 10 9 33 33 H 1.09004 * 109.62576 * 65.88385 * 12 11 10 34 34 H 1.08996 * 109.63274 * 186.45998 * 12 11 10 35 35 H 1.07996 * 120.03583 * 359.97438 * 17 16 14 36 36 H 1.07995 * 119.95982 * 180.25416 * 18 17 16 37 37 H 0.97004 * 119.99969 * 326.56705 * 20 19 18 38 38 H 0.97006 * 119.99811 * 359.97438 * 22 21 20 39 39 H 0.97002 * 120.00506 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.96614 * 180.02562 * 24 19 18 41 41 H 1.07997 * 120.03937 * 180.02562 * 25 24 19 42 42 H 1.08996 * 109.63325 * 189.11185 * 26 13 12 43 43 H 1.08999 * 109.63074 * 68.52079 * 26 13 12 44 44 H 1.09003 * 109.48958 * 292.70922 * 27 10 9 45 45 H 1.09008 * 109.49376 * 52.75469 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2387 12 6 2.5641 -6.0031 0.4115 13 7 3.4619 -5.9861 -0.7533 14 6 3.7120 -7.1121 -1.4504 15 8 4.3704 -7.0614 -2.4714 16 6 3.1866 -8.4066 -0.9746 17 6 3.0418 -8.6427 0.3952 18 6 2.5463 -9.8493 0.8354 19 6 2.2004 -10.8372 -0.0813 20 7 1.7049 -12.0605 0.3682 21 6 0.7865 -12.7246 -0.3611 22 7 0.3871 -13.9550 0.0168 23 8 0.3183 -12.2136 -1.3601 24 6 2.3483 -10.6074 -1.4455 25 6 2.8383 -9.4010 -1.8927 26 6 4.0793 -4.7076 -1.1375 27 6 2.9769 -3.6490 -1.2493 28 1 -0.4851 0.8401 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 0.9162 -4.8190 1.1422 32 1 0.8798 -5.1264 -0.6111 33 1 3.1397 -5.8263 1.3202 34 1 2.0636 -6.9693 0.4740 35 1 3.3147 -7.8781 1.1074 36 1 2.4303 -10.0309 1.8937 37 1 2.0211 -12.4336 1.2059 38 1 0.7609 -14.3629 0.8137 39 1 -0.2742 -14.4329 -0.5079 40 1 2.0785 -11.3761 -2.1544 41 1 2.9525 -9.2231 -2.9518 42 1 4.5804 -4.8173 -2.0992 43 1 4.8005 -4.4063 -0.3778 44 1 2.3151 -3.8992 -2.0784 45 1 3.4269 -2.6718 -1.4253 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418960879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:02 Heat of formation + Delta-G solvation = -38.209671 kcal Electronic energy + Delta-G solvation = -27958.151206 eV Core-core repulsion = 23975.070717 eV Total energy + Delta-G solvation = -3983.080489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92479 -41.27125 -39.47255 -38.76270 -36.17007 -35.80499 -34.70525 -34.36065 -32.57256 -31.86017 -30.80523 -29.71514 -27.36811 -25.23957 -24.82601 -23.78874 -23.66100 -22.34474 -21.80664 -20.34799 -19.48046 -19.11067 -18.57319 -18.33304 -17.46009 -17.02832 -16.70760 -16.54610 -16.36892 -16.01157 -15.78960 -15.57730 -15.46693 -15.38806 -15.08324 -14.89929 -14.46125 -14.37004 -14.03448 -13.85832 -13.64715 -13.25878 -13.02912 -12.75849 -12.61009 -12.41217 -12.34506 -12.32225 -12.12252 -11.74071 -11.62626 -11.36141 -11.31720 -10.85992 -10.72883 -10.62291 -9.96278 -9.81724 -9.16588 -9.06686 -8.20741 -6.30613 -0.18863 0.37061 1.42230 1.42868 1.56396 1.59878 1.73761 1.89765 2.09724 2.40753 2.79726 3.11604 3.23131 3.42797 3.49762 3.80891 3.91261 4.01414 4.05253 4.23127 4.23941 4.31571 4.39431 4.41956 4.50897 4.58251 4.71337 4.82910 4.92311 4.97760 4.99918 5.07284 5.16878 5.17873 5.22169 5.32163 5.38704 5.48346 5.64392 5.80685 5.91749 5.95466 6.02526 6.18719 6.37947 6.56883 6.85227 6.93620 7.04304 7.39195 7.51079 8.90664 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.002254 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.551443 B =12419.917985 C =13039.791190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.534 5.534 11 C 0.034 3.966 12 C 0.107 3.893 13 N -0.604 5.604 14 C 0.557 3.443 15 O -0.586 6.586 16 C -0.166 4.166 17 C -0.065 4.065 18 C -0.139 4.139 19 C 0.190 3.810 20 N -0.667 5.667 21 C 0.697 3.303 22 N -0.837 5.837 23 O -0.625 6.625 24 C -0.141 4.141 25 C -0.056 4.056 26 C 0.126 3.874 27 C 0.055 3.945 28 H 0.264 0.736 29 H -0.045 1.045 30 H 0.013 0.987 31 H 0.094 0.906 32 H 0.010 0.990 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.431 0.569 38 H 0.419 0.581 39 H 0.425 0.575 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.004 0.996 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -30.320 8.091 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.259 5.259 11 C -0.095 4.095 12 C -0.014 4.014 13 N -0.336 5.336 14 C 0.348 3.652 15 O -0.468 6.468 16 C -0.170 4.170 17 C -0.084 4.084 18 C -0.159 4.159 19 C 0.093 3.907 20 N -0.317 5.317 21 C 0.396 3.604 22 N -0.406 5.406 23 O -0.504 6.504 24 C -0.162 4.162 25 C -0.076 4.076 26 C 0.004 3.996 27 C -0.074 4.074 28 H 0.073 0.927 29 H -0.028 1.028 30 H 0.031 0.969 31 H 0.112 0.888 32 H 0.029 0.971 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.181 0.819 36 H 0.194 0.806 37 H 0.271 0.729 38 H 0.251 0.749 39 H 0.258 0.742 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.022 0.978 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.287 -29.662 7.192 30.976 hybrid contribution -0.776 0.623 -0.818 1.288 sum 4.511 -29.039 6.374 30.071 Atomic orbital electron populations 1.70094 1.07774 1.27831 1.51886 1.25931 0.95737 1.03282 0.94870 0.85320 0.79105 0.78546 0.77560 1.18460 1.20860 1.20332 1.21496 0.93783 0.90850 1.49805 0.91453 1.19392 0.90057 0.88899 0.93512 1.62045 1.26942 1.03040 1.33836 1.22600 0.96028 0.90094 1.00805 1.22618 0.91108 0.99505 0.88175 1.48175 1.46597 1.07937 1.30865 1.18743 0.79399 0.84601 0.82453 1.90728 1.42900 1.87270 1.25895 1.19760 1.07669 0.93816 0.95711 1.21647 0.95483 0.97836 0.93416 1.21145 1.02772 0.90934 1.01028 1.17753 0.94453 0.85992 0.92552 1.42291 1.42691 1.20065 1.26664 1.16224 0.79374 0.82281 0.82559 1.42769 1.48471 1.15750 1.33610 1.91025 1.60833 1.69306 1.29281 1.21026 1.01586 0.97891 0.95666 1.21004 0.95065 0.92049 0.99496 1.21682 0.94755 0.81158 1.02039 1.22280 0.95469 0.99636 0.89980 0.92732 1.02759 0.96901 0.88802 0.97119 0.87763 0.86036 0.81865 0.80609 0.72890 0.74948 0.74176 0.85379 0.86416 0.89661 0.89117 0.97757 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.35 13.29 21.45 0.28 -56.07 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.52 -29.18 8.41 25.60 0.22 -28.96 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 11.00 4.72 85.56 0.40 11.40 16 10 N -0.53 -22.57 4.62 -899.82 -4.16 -26.72 16 11 C 0.03 1.14 5.62 86.38 0.49 1.63 16 12 C 0.11 2.68 4.85 86.35 0.42 3.10 16 13 N -0.60 -18.34 3.01 -821.63 -2.47 -20.81 16 14 C 0.56 17.88 7.42 86.71 0.64 18.53 16 15 O -0.59 -23.13 16.20 -4.00 -0.06 -23.19 16 16 C -0.17 -4.21 5.39 -20.08 -0.11 -4.32 16 17 C -0.07 -1.10 7.38 22.50 0.17 -0.94 16 18 C -0.14 -1.69 9.94 22.35 0.22 -1.47 16 19 C 0.19 3.05 6.27 38.36 0.24 3.29 16 20 N -0.67 -6.33 5.32 -317.18 -1.69 -8.02 16 21 C 0.70 9.87 8.56 179.06 1.53 11.40 16 22 N -0.84 -3.28 8.88 -184.76 -1.64 -4.92 16 23 O -0.62 -16.08 14.85 -3.99 -0.06 -16.14 16 24 C -0.14 -3.22 8.63 22.35 0.19 -3.02 16 25 C -0.06 -1.48 9.59 22.50 0.22 -1.26 16 26 C 0.13 4.18 6.61 86.35 0.57 4.75 16 27 C 0.06 2.23 5.46 86.38 0.47 2.70 16 28 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 29 H -0.05 -2.68 8.12 -2.39 -0.02 -2.70 16 30 H 0.01 0.72 7.97 -2.39 -0.02 0.70 16 31 H 0.09 2.96 7.99 -2.39 -0.02 2.94 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.10 2.15 7.95 -2.39 -0.02 2.13 16 34 H 0.12 2.42 4.48 -2.39 -0.01 2.41 16 35 H 0.16 2.11 5.64 -2.91 -0.02 2.09 16 36 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.43 0.14 8.83 -92.70 -0.82 -0.68 16 38 H 0.42 -1.63 8.85 -92.70 -0.82 -2.45 16 39 H 0.42 1.34 8.93 -92.71 -0.83 0.51 16 40 H 0.13 3.21 6.40 -2.91 -0.02 3.19 16 41 H 0.12 3.35 7.95 -2.91 -0.02 3.32 16 42 H 0.09 2.91 7.04 -2.39 -0.02 2.90 16 43 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.08 3.53 6.67 -2.38 -0.02 3.52 16 Total: -1.00 -83.98 366.07 -3.04 -87.01 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -1.40 Total: 5.39 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.13 Total: 17.28 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -9.67 Total: -116.55 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.12 Total: -39.33 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -83.98 -3.04 -87.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418960879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.802 kcal (2) G-P(sol) polarization free energy of solvation -83.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds