Wall clock time and date at job start Sat Apr 11 2020 03:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47210 * 300.00149 * 3 2 1 6 6 H 1.48500 * 109.47234 * 59.99837 * 3 2 1 7 7 C 1.38801 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99974 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99972 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47446 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99849 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00376 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99965 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46687 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47050 * 64.99953 * 15 14 13 17 17 C 1.52999 * 109.46626 * 184.99652 * 15 14 13 18 18 O 1.42899 * 109.47353 * 55.00557 * 17 15 14 19 19 N 1.46899 * 109.47163 * 304.99923 * 15 14 13 20 20 C 1.46896 * 110.99850 * 155.00335 * 19 15 14 21 21 C 1.52996 * 109.47171 * 180.02562 * 20 19 15 22 22 H 1.08997 * 109.52321 * 54.86951 * 21 20 19 23 23 C 1.53177 * 109.52422 * 174.99829 * 21 20 19 24 24 C 1.53180 * 109.03534 * 176.88344 * 23 21 20 25 25 C 1.53087 * 109.16481 * 303.01931 * 24 23 21 26 26 O 1.42900 * 109.41534 * 57.60995 * 25 24 23 27 27 C 1.42904 * 114.09647 * 298.83871 * 26 25 24 28 28 H 0.97006 * 119.99937 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47427 * 59.99439 * 10 9 7 30 30 H 1.09001 * 109.47001 * 300.00070 * 10 9 7 31 31 H 0.97004 * 119.99482 * 0.02562 * 13 11 10 32 32 H 1.08992 * 109.47311 * 60.00333 * 14 13 11 33 33 H 1.08997 * 109.46828 * 299.99977 * 14 13 11 34 34 H 1.09000 * 109.46709 * 175.00070 * 17 15 14 35 35 H 1.08998 * 109.47903 * 294.99740 * 17 15 14 36 36 H 0.96697 * 114.00511 * 179.97438 * 18 17 15 37 37 H 1.00900 * 110.99471 * 278.95505 * 19 15 14 38 38 H 1.09010 * 109.47146 * 299.99798 * 20 19 15 39 39 H 1.08995 * 109.47422 * 59.99766 * 20 19 15 40 40 H 1.08997 * 109.54563 * 296.75142 * 23 21 20 41 41 H 1.08998 * 109.54363 * 56.93144 * 23 21 20 42 42 H 1.08995 * 109.52275 * 62.92872 * 24 23 21 43 43 H 1.09003 * 109.52227 * 183.05293 * 24 23 21 44 44 H 1.09004 * 109.48048 * 177.59180 * 25 24 23 45 45 H 1.09007 * 109.48326 * 297.62664 * 25 24 23 46 46 H 1.08998 * 109.48393 * 301.17663 * 27 26 25 47 47 H 1.09006 * 109.47887 * 181.14073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5022 0.0021 13 7 2.8441 -6.3431 0.0008 14 6 2.3303 -7.7151 0.0008 15 6 3.5024 -8.6985 0.0009 16 1 4.0598 -8.5993 0.9323 17 6 2.9693 -10.1271 -0.1246 18 8 2.1423 -10.2266 -1.2857 19 7 4.3882 -8.4048 -1.1335 20 6 5.7556 -8.8711 -0.8682 21 6 6.6468 -8.5478 -2.0691 22 1 6.5850 -7.4827 -2.2921 23 6 8.0970 -8.9197 -1.7452 24 6 8.9660 -8.6646 -2.9806 25 6 8.4101 -9.4664 -4.1603 26 8 7.0494 -9.0944 -4.3884 27 6 6.1805 -9.3542 -3.2840 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7313 0.8905 30 1 3.1243 -3.7313 -0.8895 31 1 3.8009 -6.1835 0.0004 32 1 1.7214 -7.8751 -0.8889 33 1 1.7220 -7.8751 0.8910 34 1 3.8057 -10.8204 -0.2139 35 1 2.3842 -10.3759 0.7607 36 1 1.7692 -11.1072 -1.4287 37 1 4.0284 -8.8061 -1.9865 38 1 6.1449 -8.3699 0.0181 39 1 5.7464 -9.9483 -0.7018 40 1 8.4537 -8.3087 -0.9161 41 1 8.1508 -9.9733 -1.4713 42 1 8.9513 -7.6021 -3.2232 43 1 9.9900 -8.9776 -2.7766 44 1 8.9991 -9.2556 -5.0529 45 1 8.4626 -10.5313 -3.9331 46 1 6.2039 -10.4174 -3.0453 47 1 5.1633 -9.0623 -3.5453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676505621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:41 Heat of formation + Delta-G solvation = -146.838428 kcal Electronic energy + Delta-G solvation = -26313.804644 eV Core-core repulsion = 22429.164858 eV Total energy + Delta-G solvation = -3884.639785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00480 -39.18637 -38.14757 -36.11032 -34.67700 -33.47400 -32.36063 -31.96190 -29.84498 -28.62366 -25.80157 -25.56489 -25.40056 -25.06997 -22.19063 -21.15132 -20.41871 -20.07542 -18.01042 -17.70187 -16.80212 -16.71045 -16.13137 -16.11719 -15.84750 -15.35674 -15.04507 -14.82820 -14.74146 -14.70188 -14.51043 -13.79975 -13.66441 -13.64661 -13.43875 -13.05344 -12.90631 -12.58658 -12.51373 -12.16072 -11.91811 -11.82851 -11.60095 -11.42736 -11.36671 -11.01774 -10.94401 -10.92661 -10.69677 -10.66671 -10.44126 -9.81537 -9.72792 -9.23320 -9.00954 -8.78008 -8.60270 -8.13158 -6.40922 -6.14920 -3.84176 3.15853 3.26072 3.29955 3.33564 3.39406 3.50387 3.55932 3.89705 3.94766 4.27411 4.33068 4.35947 4.47442 4.53773 4.54916 4.65667 4.76707 4.91677 4.92866 4.97096 5.05305 5.13343 5.18725 5.20106 5.21623 5.26169 5.32915 5.38216 5.48208 5.57906 5.62823 5.68377 5.74664 5.83120 5.96386 6.02723 6.10297 6.27492 6.61756 6.82711 6.86203 7.06977 7.19428 7.66819 7.98781 8.42576 8.83381 9.30485 10.92593 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.002446 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.066757 B =11445.938620 C =13312.735404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.063 6.063 10 C -0.151 4.151 11 C 0.530 3.470 12 O -0.525 6.525 13 N -0.725 5.725 14 C 0.138 3.862 15 C 0.078 3.922 16 H 0.094 0.906 17 C 0.048 3.952 18 O -0.565 6.565 19 N -0.679 5.679 20 C 0.064 3.936 21 C -0.123 4.123 22 H 0.093 0.907 23 C -0.116 4.116 24 C -0.156 4.156 25 C 0.059 3.941 26 O -0.379 6.379 27 C 0.065 3.935 28 H 0.267 0.733 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.402 0.598 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.381 0.619 37 H 0.353 0.647 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.044 0.956 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.792 -26.556 -2.359 32.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.681 4.681 8 H 0.091 0.909 9 S 0.164 5.836 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.400 6.400 13 N -0.379 5.379 14 C 0.013 3.987 15 C -0.032 4.032 16 H 0.112 0.888 17 C -0.033 4.033 18 O -0.370 6.370 19 N -0.312 5.312 20 C -0.065 4.065 21 C -0.142 4.142 22 H 0.112 0.888 23 C -0.154 4.154 24 C -0.194 4.194 25 C -0.018 4.018 26 O -0.298 6.298 27 C -0.012 4.012 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.236 0.764 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.174 0.826 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.851 -25.432 -2.385 30.063 hybrid contribution 2.359 -0.429 0.334 2.421 sum 18.210 -25.862 -2.051 31.696 Atomic orbital electron populations 1.70035 1.05936 1.27222 1.47181 1.24993 0.95020 0.99001 0.94675 0.86123 0.79606 0.81965 0.77828 1.19631 1.20611 1.20639 1.22920 0.94940 0.91729 1.58491 0.90935 1.85378 1.05240 0.96289 1.96680 1.23503 1.06290 0.95589 1.04773 1.20257 0.86523 0.86306 0.75354 1.90691 1.15480 1.85680 1.48117 1.45773 1.10107 1.04939 1.77084 1.21096 0.94414 0.80684 1.02545 1.21966 0.94147 0.91889 0.95216 0.88754 1.22805 0.93854 0.97745 0.88846 1.86504 1.67958 1.36719 1.45828 1.60478 1.01396 1.63763 1.05557 1.22006 0.88830 0.97530 0.98121 1.21836 0.94538 1.02659 0.95151 0.88838 1.21593 0.94299 1.01511 0.98009 1.22184 0.99522 1.01992 0.95712 1.22585 0.83198 0.97457 0.98573 1.87983 1.18389 1.85119 1.38283 1.22654 0.94342 0.97664 0.86515 0.92322 0.89499 0.89282 0.76390 0.90631 0.91806 0.93573 0.92688 0.77156 0.82579 0.90468 0.95348 0.91135 0.92044 0.90722 0.90884 0.88929 0.93456 0.93727 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.73 13.22 55.49 0.73 -26.00 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.58 9.50 30.94 0.29 -15.28 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 10 C -0.15 -3.22 6.16 36.00 0.22 -2.99 16 11 C 0.53 10.56 7.85 -10.99 -0.09 10.47 16 12 O -0.52 -12.62 15.86 5.55 0.09 -12.53 16 13 N -0.72 -10.55 5.39 -60.30 -0.32 -10.87 16 14 C 0.14 1.72 5.26 -4.04 -0.02 1.70 16 15 C 0.08 0.64 2.57 -67.71 -0.17 0.47 16 16 H 0.09 0.67 7.80 -51.93 -0.40 0.26 16 17 C 0.05 0.31 6.72 37.16 0.25 0.56 16 18 O -0.56 -4.27 12.05 -35.23 -0.42 -4.70 16 19 N -0.68 -5.55 5.69 -106.73 -0.61 -6.16 16 20 C 0.06 0.41 4.94 -3.83 -0.02 0.39 16 21 C -0.12 -0.87 2.60 -90.48 -0.23 -1.10 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.12 -0.68 5.31 -26.55 -0.14 -0.82 16 24 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 25 C 0.06 0.40 6.84 37.20 0.25 0.65 16 26 O -0.38 -3.67 10.77 -35.23 -0.38 -4.05 16 27 C 0.07 0.51 5.84 37.21 0.22 0.72 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 30 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 31 H 0.40 4.96 8.14 -40.82 -0.33 4.63 16 32 H 0.08 1.13 7.39 -51.93 -0.38 0.74 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.23 7.35 -51.93 -0.38 -0.15 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 1.30 9.12 45.56 0.42 1.71 16 37 H 0.35 3.12 6.27 -39.29 -0.25 2.88 16 38 H 0.08 0.48 8.06 -51.92 -0.42 0.07 16 39 H 0.03 0.16 7.36 -51.93 -0.38 -0.22 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.10 0.79 6.81 -51.93 -0.35 0.44 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -36.65 391.76 -9.05 -45.70 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.11 Total: 4.15 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 0.30 Total: -4.33 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.20 Total: -43.03 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.72 Total: -21.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.65 -9.05 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676505621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.137 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds