Wall clock time and date at job start Sat Apr 11 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48500 * 109.47339 * 270.00082 * 3 2 1 5 5 H 1.48500 * 109.47135 * 30.00341 * 3 2 1 6 6 H 1.48499 * 109.46959 * 149.99823 * 3 2 1 7 7 C 1.38806 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00104 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64839 * 14.73355 * 9 7 2 11 11 C 1.54908 * 104.83249 * 155.89087 * 10 9 7 12 12 C 1.55148 * 101.58220 * 37.01153 * 11 10 9 13 13 C 1.47021 * 125.64864 * 194.75577 * 9 7 2 14 14 H 1.08999 * 110.01228 * 300.53028 * 13 9 7 15 15 C 1.53005 * 109.87989 * 61.62171 * 13 9 7 16 16 N 1.46498 * 109.46867 * 182.39539 * 15 13 9 17 17 C 1.34782 * 119.99920 * 185.13179 * 16 15 13 18 18 O 1.21587 * 119.99709 * 0.02562 * 17 16 15 19 19 C 1.47539 * 119.99813 * 179.97438 * 17 16 15 20 20 C 1.39796 * 120.98001 * 0.02907 * 19 17 16 21 21 N 1.32193 * 118.97684 * 179.70693 * 20 19 17 22 22 C 1.31934 * 121.14172 * 0.54178 * 21 20 19 23 23 C 1.50698 * 118.90437 * 179.71555 * 22 21 20 24 24 C 1.53003 * 117.49679 * 299.73556 * 23 22 21 25 25 C 1.52996 * 60.03053 * 107.50412 * 24 23 22 26 26 N 1.31731 * 122.19425 * 359.44062 * 22 21 20 27 27 C 1.32770 * 120.86965 * 0.27233 * 26 22 21 28 28 O 1.35280 * 120.61050 * 179.97438 * 27 26 22 29 29 H 0.96991 * 120.00212 * 359.97438 * 1 2 3 30 30 H 1.09011 * 110.36500 * 37.05641 * 10 9 7 31 31 H 1.09000 * 110.45863 * 274.77923 * 10 9 7 32 32 H 1.08997 * 111.00519 * 278.93260 * 11 10 9 33 33 H 1.09000 * 110.99966 * 155.08518 * 11 10 9 34 34 H 1.08996 * 110.72503 * 206.13199 * 12 11 10 35 35 H 1.09000 * 110.72448 * 82.85791 * 12 11 10 36 36 H 1.08992 * 109.47066 * 62.40202 * 15 13 9 37 37 H 1.09000 * 109.47312 * 302.39517 * 15 13 9 38 38 H 0.97007 * 120.00604 * 5.13726 * 16 15 13 39 39 H 1.07996 * 120.51708 * 359.97417 * 20 19 17 40 40 H 1.08996 * 115.55083 * 154.06381 * 23 22 21 41 41 H 1.09007 * 117.49531 * 215.00408 * 24 23 22 42 42 H 1.09001 * 117.50001 * 359.97438 * 24 23 22 43 43 H 1.08999 * 117.50304 * 107.50563 * 25 24 23 44 44 H 1.09006 * 117.49444 * 252.52411 * 25 24 23 45 45 H 0.96691 * 114.00059 * 90.00363 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1074 -2.5529 -0.3047 11 6 -0.2464 -4.0220 -0.7759 12 6 0.7642 -4.7442 0.1537 13 6 1.8979 -3.7078 0.3032 14 1 2.7027 -3.9353 -0.3958 15 6 2.4333 -3.7254 1.7364 16 7 3.0522 -5.0246 2.0106 17 6 3.5030 -5.3085 3.2486 18 8 3.3956 -4.4864 4.1380 19 6 4.1258 -6.6171 3.5248 20 6 4.2593 -7.5774 2.5177 21 7 4.8288 -8.7346 2.8076 22 6 5.2594 -8.9967 4.0268 23 6 5.8952 -10.3348 4.3029 24 6 5.0434 -11.5837 4.0671 25 6 6.1821 -11.2422 3.1040 26 7 5.1569 -8.1256 5.0097 27 6 4.6037 -6.9353 4.8101 28 8 4.5007 -6.0449 5.8234 29 1 -0.4850 0.8400 0.0004 30 1 -0.4076 -1.8696 -1.0993 31 1 -0.7085 -2.3824 0.5885 32 1 0.0417 -4.1257 -1.8219 33 1 -1.2593 -4.3903 -0.6129 34 1 1.1348 -5.6563 -0.3141 35 1 0.3110 -4.9622 1.1208 36 1 1.6117 -3.5601 2.4333 37 1 3.1759 -2.9366 1.8566 38 1 3.1377 -5.6806 1.3011 39 1 3.9066 -7.3754 1.5171 40 1 6.6025 -10.3571 5.1319 41 1 5.1904 -12.4277 4.7411 42 1 4.0231 -11.4375 3.7127 43 1 7.0782 -11.8615 3.1442 44 1 5.9110 -10.8709 2.1156 45 1 5.2615 -5.4540 5.9066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028186389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:40 Heat of formation + Delta-G solvation = 29.478424 kcal Electronic energy + Delta-G solvation = -27995.532738 eV Core-core repulsion = 24015.387425 eV Total energy + Delta-G solvation = -3980.145313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71939 -39.44353 -38.22364 -37.54909 -37.01004 -34.44957 -33.68295 -32.54691 -31.80299 -29.68433 -28.70100 -26.29477 -24.92167 -24.60412 -23.79438 -22.74115 -21.99513 -20.79797 -20.20413 -19.70033 -18.95716 -18.42285 -17.82359 -16.75084 -16.59439 -16.10680 -15.66993 -15.06374 -14.87228 -14.71208 -14.62160 -14.50061 -14.19745 -13.91653 -13.55913 -13.09461 -12.65469 -12.40610 -12.14784 -11.94156 -11.90767 -11.82342 -11.56116 -11.39460 -11.29117 -10.98896 -10.90356 -10.84785 -10.82062 -10.31379 -10.15228 -10.02416 -9.89845 -9.80169 -9.71252 -9.69203 -9.59921 -8.78535 -8.62365 -6.89242 -5.81160 -3.18342 0.06291 0.57839 2.63978 2.87336 3.17723 3.28851 3.37165 3.43108 3.44542 3.46701 3.62385 3.90760 4.38306 4.43277 4.44867 4.51695 4.58493 4.70578 4.91945 5.14962 5.26301 5.27633 5.34087 5.41200 5.45024 5.56745 5.64882 5.75070 5.75831 5.83646 5.98122 6.06535 6.18315 6.39999 6.45049 6.48784 6.51403 6.62373 6.72992 6.98033 7.15585 7.46804 7.54751 7.58051 7.64412 7.74926 8.20297 8.27285 9.12665 9.73227 10.40177 11.30755 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.002521 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.450931 B =11104.918394 C =11956.234101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.715 5.715 17 C 0.560 3.440 18 O -0.518 6.518 19 C -0.261 4.261 20 C 0.200 3.800 21 N -0.526 5.526 22 C 0.389 3.611 23 C -0.110 4.110 24 C -0.153 4.153 25 C -0.150 4.150 26 N -0.539 5.539 27 C 0.421 3.579 28 O -0.452 6.452 29 H 0.254 0.746 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.393 0.607 39 H 0.178 0.822 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 -21.845 4.254 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.015 4.015 16 N -0.367 5.367 17 C 0.344 3.656 18 O -0.394 6.394 19 C -0.270 4.270 20 C 0.034 3.966 21 N -0.241 5.241 22 C 0.124 3.876 23 C -0.130 4.130 24 C -0.191 4.191 25 C -0.187 4.187 26 N -0.264 5.264 27 C 0.233 3.767 28 O -0.260 6.260 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.227 0.773 39 H 0.195 0.805 40 H 0.150 0.850 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 9.790 -21.957 5.218 24.601 hybrid contribution 0.438 1.802 -0.295 1.878 sum 10.228 -20.156 4.923 23.132 Atomic orbital electron populations 1.69931 1.05039 1.25410 1.55619 1.24926 0.95684 0.97918 1.01243 0.86145 0.78811 0.83373 0.77583 1.21495 1.21558 1.20514 1.18972 0.90384 0.82144 1.44948 0.90631 1.44477 1.06429 1.00977 1.79293 1.21461 0.84754 0.90178 0.98901 1.23002 0.97577 0.99589 0.98538 1.22621 0.97180 0.96956 0.99795 1.21140 0.94566 0.88248 0.91751 0.94426 1.22340 0.97639 0.82031 0.99507 1.46053 1.60933 1.19481 1.10220 1.17576 0.79165 0.85460 0.83426 1.90844 1.55829 1.48303 1.44434 1.22154 1.09758 0.99349 0.95734 1.23468 0.87879 0.86350 0.98946 1.68109 1.13345 1.20879 1.21785 1.22105 0.88775 0.93440 0.83303 1.20731 1.04044 0.85041 1.03145 1.23021 0.97118 0.96167 1.02786 1.23078 0.99889 1.00462 0.95319 1.67800 1.19017 1.03376 1.36192 1.19428 0.85868 0.86804 0.84618 1.84652 1.46007 1.46551 1.48814 0.93534 0.90948 0.95537 0.92254 0.92307 0.92378 0.91786 0.91242 0.91200 0.77314 0.80531 0.84983 0.87674 0.88343 0.87932 0.86893 0.72409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.24 10.58 55.49 0.59 -25.66 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.31 9.76 -15.06 -0.15 -6.46 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.59 -14.14 3.13 -162.57 -0.51 -14.64 16 10 C 0.17 3.99 5.41 -2.53 -0.01 3.98 16 11 C -0.15 -2.62 7.08 -24.59 -0.17 -2.79 16 12 C -0.13 -2.01 6.10 -24.90 -0.15 -2.16 16 13 C 0.15 2.83 3.22 -66.95 -0.22 2.62 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.01 5.07 -4.04 -0.02 1.98 16 16 N -0.72 -9.99 5.28 -61.35 -0.32 -10.32 16 17 C 0.56 8.50 7.78 -12.47 -0.10 8.40 16 18 O -0.52 -9.88 15.31 -15.85 -0.24 -10.12 16 19 C -0.26 -3.26 5.92 -104.57 -0.62 -3.88 16 20 C 0.20 2.01 10.80 -16.81 -0.18 1.82 16 21 N -0.53 -5.51 9.30 -10.44 -0.10 -5.61 16 22 C 0.39 4.27 7.31 -157.13 -1.15 3.12 16 23 C -0.11 -0.88 6.23 -91.74 -0.57 -1.45 16 24 C -0.15 -0.98 10.23 -26.73 -0.27 -1.25 16 25 C -0.15 -0.92 10.01 -26.70 -0.27 -1.19 16 26 N -0.54 -6.76 10.34 -10.47 -0.11 -6.86 16 27 C 0.42 5.53 7.85 -16.19 -0.13 5.40 16 28 O -0.45 -5.90 11.81 -38.68 -0.46 -6.35 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.07 1.88 6.94 -51.92 -0.36 1.52 16 31 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.02 7.81 -51.93 -0.41 0.61 16 36 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 37 H 0.07 1.45 7.92 -51.93 -0.41 1.04 16 38 H 0.39 4.12 6.47 -40.82 -0.26 3.86 16 39 H 0.18 1.19 6.53 -52.49 -0.34 0.85 16 40 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.11 0.79 7.53 -51.93 -0.39 0.40 16 45 H 0.41 3.59 9.06 45.56 0.41 4.00 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -33.75 374.53 -10.16 -43.91 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.53 Total: 5.22 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -4.10 Total: 8.04 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.45 Total: -63.09 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.70 Total: -16.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.75 -10.16 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028186389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.390 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds