Wall clock time and date at job start Sat Apr 11 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48494 * 109.47543 * 95.09398 * 3 2 1 5 5 H 1.48501 * 109.47340 * 215.09581 * 3 2 1 6 6 H 1.48505 * 109.46956 * 335.09465 * 3 2 1 7 7 C 1.38812 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00108 * 27.80910 * 7 2 1 9 9 N 1.36938 * 120.00415 * 207.80928 * 7 2 1 10 10 C 1.47083 * 125.62222 * 9.94576 * 9 7 2 11 11 C 1.54463 * 107.29423 * 180.96897 * 10 9 7 12 12 C 1.54392 * 102.86764 * 21.50645 * 11 10 9 13 13 C 1.47573 * 125.63234 * 189.64480 * 9 7 2 14 14 C 1.52104 * 110.50804 * 207.35575 * 12 11 10 15 15 C 1.53342 * 109.44464 * 295.91101 * 14 12 11 16 16 N 1.46933 * 108.69045 * 306.70208 * 15 14 12 17 17 C 1.34781 * 120.55454 * 234.37569 * 16 15 14 18 18 O 1.21540 * 119.99766 * 186.11592 * 17 16 15 19 19 C 1.47934 * 120.00115 * 6.10933 * 17 16 15 20 20 C 1.39972 * 120.11902 * 201.55229 * 19 17 16 21 21 C 1.38414 * 117.97179 * 179.97438 * 20 19 17 22 22 C 1.39352 * 118.03685 * 359.97438 * 21 20 19 23 23 O 1.35512 * 120.03159 * 180.02562 * 22 21 20 24 24 N 1.32680 * 119.94057 * 359.97438 * 22 21 20 25 25 N 1.28355 * 122.19691 * 359.73542 * 24 22 21 26 26 C 1.46930 * 118.89196 * 54.34284 * 16 15 14 27 27 C 1.52104 * 110.50835 * 83.33265 * 12 11 10 28 28 H 0.96997 * 119.99866 * 185.12168 * 1 2 3 29 29 H 1.08992 * 109.88015 * 300.39515 * 10 9 7 30 30 H 1.09006 * 109.87727 * 61.54873 * 10 9 7 31 31 H 1.08996 * 110.73363 * 139.85466 * 11 10 9 32 32 H 1.09001 * 110.73136 * 263.15974 * 11 10 9 33 33 H 1.09001 * 110.37444 * 275.52389 * 13 9 7 34 34 H 1.09003 * 110.37615 * 37.86848 * 13 9 7 35 35 H 1.09001 * 109.47624 * 55.89711 * 14 12 11 36 36 H 1.08994 * 109.47868 * 175.91584 * 14 12 11 37 37 H 1.09006 * 109.60359 * 186.94180 * 15 14 12 38 38 H 1.08995 * 109.60902 * 66.46335 * 15 14 12 39 39 H 1.08003 * 121.01337 * 359.97438 * 20 19 17 40 40 H 1.07996 * 120.98317 * 180.02562 * 21 20 19 41 41 H 0.96701 * 114.00761 * 89.99234 * 23 22 21 42 42 H 1.09002 * 109.60441 * 185.89562 * 26 16 15 43 43 H 1.09003 * 109.60200 * 65.41636 * 26 16 15 44 44 H 1.08996 * 109.47942 * 184.07324 * 27 12 11 45 45 H 1.09003 * 109.47562 * 304.09844 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6055 1.9843 1.3945 5 1 3.4899 1.4736 -0.8050 6 1 1.3980 2.6813 -0.5896 7 6 2.0103 -1.2021 0.0005 8 1 1.5639 -2.0836 -0.4354 9 7 3.2611 -1.2705 0.5538 10 6 3.9013 -0.2176 1.3568 11 6 5.3079 -0.7258 1.7429 12 6 5.5869 -1.8079 0.6775 13 6 4.1866 -2.4150 0.4481 14 6 6.5428 -2.8581 1.2223 15 6 7.9004 -2.2090 1.5169 16 7 8.3593 -1.5086 0.3095 17 6 9.5714 -1.7732 -0.2171 18 8 9.9871 -1.1115 -1.1480 19 6 10.3959 -2.8689 0.3381 20 6 11.7809 -2.8777 0.1355 21 6 12.5092 -3.9237 0.6750 22 6 11.8198 -4.9034 1.3869 23 8 12.4928 -5.9452 1.9327 24 7 10.5038 -4.8146 1.5307 25 7 9.8257 -3.8433 1.0366 26 6 7.4745 -0.5154 -0.3146 27 6 6.1193 -1.1744 -0.5987 28 1 -0.4850 -0.8367 0.0750 29 1 3.9858 0.6967 0.7695 30 1 3.3153 -0.0297 2.2566 31 1 6.0404 0.0786 1.6769 32 1 5.3001 -1.1610 2.7422 33 1 3.9617 -3.1570 1.2142 34 1 4.1253 -2.8622 -0.5441 35 1 6.1345 -3.2795 2.1410 36 1 6.6711 -3.6503 0.4848 37 1 8.6223 -2.9787 1.7898 38 1 7.7953 -1.4966 2.3351 39 1 12.2663 -2.0922 -0.4246 40 1 13.5804 -3.9787 0.5487 41 1 12.8002 -5.7854 2.8355 42 1 7.9155 -0.1687 -1.2491 43 1 7.3363 0.3278 0.3622 44 1 6.2418 -1.9427 -1.3621 45 1 5.4154 -0.4205 -0.9513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035153585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:39 Heat of formation + Delta-G solvation = 40.480142 kcal Electronic energy + Delta-G solvation = -29192.052593 eV Core-core repulsion = 25212.384351 eV Total energy + Delta-G solvation = -3979.668243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.93342 -40.38352 -38.90795 -38.08209 -36.12360 -33.79657 -33.30829 -32.37661 -31.25697 -30.75178 -28.96316 -27.36232 -25.76795 -25.10856 -23.69420 -23.26740 -22.76860 -20.96125 -20.19479 -19.73728 -18.87735 -18.16918 -17.61281 -17.00094 -16.83427 -16.22888 -15.56752 -15.33902 -14.97916 -14.90166 -14.77069 -14.50129 -13.93693 -13.92453 -13.61780 -13.40795 -13.18377 -13.03306 -12.85067 -12.53294 -12.28547 -11.93201 -11.76155 -11.26844 -11.07075 -11.04251 -10.93297 -10.90821 -10.63651 -10.36125 -10.32033 -10.29140 -10.13807 -9.92002 -9.62481 -9.50112 -9.09144 -8.69568 -8.41578 -6.99790 -6.31222 -3.11909 -0.17502 0.12007 2.10034 2.58721 2.81451 3.00861 3.46723 3.51013 3.54916 3.73496 3.91355 4.07053 4.23120 4.34292 4.67310 4.84442 4.85829 4.93720 5.02248 5.08514 5.18308 5.22869 5.28911 5.34480 5.44261 5.47214 5.66412 5.74635 5.79562 5.80967 5.97727 6.03593 6.08576 6.18550 6.27420 6.38898 6.40623 6.55620 6.59004 6.67267 6.71425 6.81496 6.88894 7.16355 7.73001 7.77116 7.96684 8.39539 9.08083 9.64453 10.32354 11.18308 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.002868 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.814601 B = 9762.004993 C =10379.490558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.016 4.016 3 Si 1.057 2.943 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.301 1.301 7 C -0.327 4.327 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.119 3.881 11 C -0.122 4.122 12 C -0.076 4.076 13 C 0.147 3.853 14 C -0.108 4.108 15 C 0.077 3.923 16 N -0.581 5.581 17 C 0.574 3.426 18 O -0.532 6.532 19 C 0.020 3.980 20 C -0.049 4.049 21 C -0.138 4.138 22 C 0.273 3.727 23 O -0.472 6.472 24 N -0.259 5.259 25 N -0.171 5.171 26 C 0.110 3.890 27 C -0.113 4.113 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.410 0.590 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.944 -6.867 5.653 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.216 4.216 3 Si 0.890 3.110 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.230 1.230 7 C -0.454 4.454 8 H 0.094 0.906 9 N -0.336 5.336 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.077 4.077 13 C 0.021 3.979 14 C -0.147 4.147 15 C -0.046 4.046 16 N -0.312 5.312 17 C 0.358 3.642 18 O -0.408 6.408 19 C -0.126 4.126 20 C -0.078 4.078 21 C -0.168 4.168 22 C 0.089 3.911 23 O -0.278 6.278 24 N -0.112 5.112 25 N -0.020 5.020 26 C -0.012 4.012 27 C -0.151 4.151 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.270 0.730 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.458 -5.845 5.136 28.539 hybrid contribution 1.543 -0.974 0.003 1.825 sum 29.002 -6.818 5.138 30.232 Atomic orbital electron populations 1.70885 1.06221 1.29282 1.49312 1.25742 0.96136 1.00637 0.99122 0.83928 0.74047 0.76914 0.76070 1.22319 1.22082 1.22953 1.20024 0.89487 0.97725 1.38162 0.90598 1.44832 1.15351 1.13870 1.59524 1.21638 0.91790 0.92444 0.94691 1.22642 0.97194 0.97931 0.98187 1.21187 0.95921 0.95613 0.95028 1.21584 0.86764 0.91010 0.98563 1.21616 0.93484 0.97717 1.01851 1.22812 0.98747 0.97640 0.85431 1.48018 1.14953 1.40156 1.28061 1.17487 0.81432 0.82349 0.82956 1.90813 1.71311 1.49877 1.28826 1.23006 0.93978 0.97164 0.98460 1.22398 0.92667 0.98110 0.94628 1.22593 1.03190 0.92821 0.98192 1.21033 0.89661 0.86740 0.93660 1.84751 1.72041 1.36194 1.34849 1.73163 1.06217 1.14863 1.16966 1.73249 1.28003 0.96900 1.03872 1.21886 0.89871 0.90294 0.99110 1.21670 0.95042 1.01122 0.97294 0.92679 0.95750 0.94601 0.91615 0.91374 0.95606 0.93952 0.90421 0.91316 0.85347 0.91593 0.81545 0.81836 0.73049 0.88934 0.90719 0.91635 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.97 13.70 55.49 0.76 -28.21 16 2 C -0.02 -0.47 5.42 -17.43 -0.09 -0.56 16 3 Si 1.06 26.96 24.70 -169.99 -4.20 22.76 16 4 H -0.30 -7.12 6.76 56.52 0.38 -6.74 16 5 H -0.29 -7.05 6.79 56.52 0.38 -6.67 16 6 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 7 C -0.33 -9.41 10.42 -15.06 -0.16 -9.57 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 N -0.61 -14.84 3.28 -170.17 -0.56 -15.40 16 10 C 0.12 2.58 4.60 -2.96 -0.01 2.57 16 11 C -0.12 -1.97 4.92 -25.23 -0.12 -2.09 16 12 C -0.08 -1.20 0.55 -153.99 -0.08 -1.28 16 13 C 0.15 2.92 6.16 -2.75 -0.02 2.90 16 14 C -0.11 -1.39 4.84 -27.01 -0.13 -1.53 16 15 C 0.08 0.88 5.86 -3.63 -0.02 0.85 16 16 N -0.58 -7.33 2.96 -173.65 -0.51 -7.84 16 17 C 0.57 7.32 7.60 -12.29 -0.09 7.23 16 18 O -0.53 -7.96 16.02 5.33 0.09 -7.88 16 19 C 0.02 0.21 6.51 -82.85 -0.54 -0.33 16 20 C -0.05 -0.36 9.72 -38.87 -0.38 -0.74 16 21 C -0.14 -0.77 10.14 -39.10 -0.40 -1.16 16 22 C 0.27 2.05 7.85 -16.77 -0.13 1.92 16 23 O -0.47 -2.59 13.56 -18.23 -0.25 -2.84 16 24 N -0.26 -2.71 11.54 30.55 0.35 -2.36 16 25 N -0.17 -1.90 7.65 33.32 0.26 -1.65 16 26 C 0.11 1.47 6.11 -3.63 -0.02 1.45 16 27 C -0.11 -1.76 4.87 -27.01 -0.13 -1.89 16 28 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 29 H 0.03 0.57 3.64 -51.93 -0.19 0.38 16 30 H 0.04 0.83 7.95 -51.93 -0.41 0.41 16 31 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 32 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 33 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.04 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.13 1.43 3.85 -122.24 -0.47 0.96 16 38 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 39 H 0.17 0.97 7.86 -52.48 -0.41 0.55 16 40 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.41 0.04 9.06 45.56 0.41 0.45 16 42 H 0.09 1.27 7.03 -51.93 -0.37 0.91 16 43 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.59 7.82 -51.93 -0.41 1.18 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -35.83 350.40 -6.56 -42.40 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.45 Total: -2.03 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.33 Total: -2.23 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.30 Total: -55.45 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.16 Total: -10.72 kcal Atomic # 14 Polarization: 26.96 SS G_CDS: -4.20 Total: 22.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.83 -6.56 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035153585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.878 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds