Wall clock time and date at job start Sat Apr 11 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48497 * 109.46937 * 274.99920 * 3 2 1 5 5 H 1.48493 * 109.47080 * 34.99694 * 3 2 1 6 6 H 1.48497 * 109.47029 * 154.99782 * 3 2 1 7 7 C 1.38823 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99742 * 185.14089 * 7 2 1 9 9 N 1.36942 * 119.99638 * 5.14101 * 7 2 1 10 10 C 1.47207 * 125.89301 * 354.71376 * 9 7 2 11 11 C 1.54719 * 107.24209 * 183.75557 * 10 9 7 12 12 C 1.54194 * 102.06350 * 21.52284 * 11 10 9 13 13 H 1.08998 * 109.50893 * 78.49316 * 12 11 10 14 14 C 1.50947 * 112.77483 * 199.86105 * 12 11 10 15 15 N 1.45822 * 111.63807 * 70.84399 * 14 12 11 16 16 C 1.34776 * 121.15565 * 231.86927 * 15 14 12 17 17 O 1.21603 * 120.00192 * 173.35832 * 16 15 14 18 18 C 1.47391 * 119.99574 * 353.36376 * 16 15 14 19 19 C 1.38217 * 126.46161 * 152.53342 * 18 16 15 20 20 N 1.34256 * 108.39556 * 179.86288 * 19 18 16 21 21 H 0.96999 * 125.39313 * 180.14833 * 20 19 18 22 22 C 1.37785 * 109.21740 * 0.40215 * 20 19 18 23 23 C 1.46810 * 125.84900 * 179.78690 * 22 20 19 24 24 N 1.34784 * 119.99880 * 359.95393 * 23 22 20 25 25 O 1.21675 * 120.00080 * 179.97438 * 23 22 20 26 26 C 1.36347 * 108.29937 * 359.75067 * 22 20 19 27 27 C 1.47219 * 117.48599 * 51.50259 * 15 14 12 28 28 C 1.52757 * 107.75450 * 302.28430 * 27 15 14 29 29 C 1.48628 * 125.88352 * 174.74456 * 9 7 2 30 30 H 1.09004 * 112.00988 * 31.84533 * 29 9 7 31 31 H 0.96996 * 119.99500 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.89144 * 303.16871 * 10 9 7 33 33 H 1.09006 * 109.88105 * 64.19177 * 10 9 7 34 34 H 1.08999 * 110.91454 * 263.33120 * 11 10 9 35 35 H 1.09002 * 110.91043 * 139.71406 * 11 10 9 36 36 H 1.08993 * 109.14394 * 190.52384 * 14 12 11 37 37 H 1.09006 * 109.14100 * 309.65921 * 14 12 11 38 38 H 1.07994 * 125.79870 * 359.97438 * 19 18 16 39 39 H 0.96997 * 119.99834 * 0.02562 * 24 23 22 40 40 H 0.97003 * 119.99573 * 180.02562 * 24 23 22 41 41 H 1.08007 * 126.49325 * 180.02562 * 26 22 20 42 42 H 1.08994 * 109.79986 * 182.72238 * 27 15 14 43 43 H 1.08996 * 109.80380 * 61.84717 * 27 15 14 44 44 H 1.09004 * 109.20432 * 297.54011 * 28 27 15 45 45 H 1.08999 * 109.17075 * 178.21913 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5047 2.6198 0.8030 6 1 3.5967 1.4118 0.5917 7 6 2.0103 -1.2023 -0.0005 8 1 3.0869 -1.2042 0.0833 9 7 1.3295 -2.3857 -0.1073 10 6 -0.1342 -2.5414 -0.1182 11 6 -0.4337 -4.0588 -0.1593 12 6 0.8775 -4.6609 0.3844 13 1 0.8982 -4.5676 1.4702 14 6 1.0497 -6.1147 0.0164 15 7 1.3258 -6.2803 -1.4058 16 6 0.6019 -7.1288 -2.1625 17 8 0.7682 -7.1626 -3.3666 18 6 -0.3913 -8.0156 -1.5304 19 6 -1.5326 -8.5239 -2.1215 20 7 -2.1709 -9.2890 -1.2218 21 1 -3.0001 -9.7674 -1.3785 22 6 -1.4648 -9.2826 -0.0386 23 6 -1.8383 -9.9952 1.1894 24 7 -2.9627 -10.7376 1.2223 25 8 -1.1330 -9.9152 2.1777 26 6 -0.3595 -8.5017 -0.2040 27 6 2.4183 -5.4802 -1.9835 28 6 2.1014 -4.0075 -1.7302 29 6 1.9414 -3.7345 -0.2317 30 1 2.8929 -3.8017 0.2958 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5604 -2.1037 0.7845 33 1 -0.5523 -2.0545 -0.9993 34 1 -0.6204 -4.3910 -1.1805 35 1 -1.2741 -4.3072 0.4890 36 1 1.8870 -6.5288 0.5780 37 1 0.1419 -6.6592 0.2766 38 1 -1.8550 -8.3386 -3.1354 39 1 -3.5250 -10.8014 0.4345 40 1 -3.2097 -11.2081 2.0338 41 1 0.3974 -8.2943 0.5381 42 1 2.4839 -5.6647 -3.0557 43 1 3.3615 -5.7427 -1.5044 44 1 1.1757 -3.7466 -2.2430 45 1 2.9131 -3.3943 -2.1216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036897500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:52 Heat of formation + Delta-G solvation = 14.523713 kcal Electronic energy + Delta-G solvation = -29228.787216 eV Core-core repulsion = 25247.993418 eV Total energy + Delta-G solvation = -3980.793798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -41.92499 -39.93697 -39.10620 -37.92430 -35.12494 -34.23249 -32.44596 -32.34578 -30.86564 -29.78678 -29.22505 -28.13563 -25.27726 -23.89403 -23.52424 -23.05947 -21.68032 -20.66354 -19.93795 -19.60598 -19.21692 -17.80539 -17.45245 -16.75415 -16.29470 -16.11695 -15.58600 -15.50930 -14.95039 -14.69822 -14.38187 -14.18671 -14.07562 -13.90459 -13.66911 -13.41384 -12.91980 -12.76033 -12.58911 -12.41797 -11.89850 -11.52423 -11.46941 -11.27427 -10.95682 -10.75622 -10.67322 -10.65305 -10.21575 -10.04518 -9.88665 -9.83910 -9.64119 -9.58266 -9.52660 -9.17692 -8.67864 -8.55396 -8.25273 -6.78021 -5.66469 -2.98655 1.09466 1.76320 2.56592 2.95426 3.01181 3.24417 3.43312 3.48450 3.50313 3.54842 4.46699 4.52926 4.71894 4.76327 4.95002 5.05383 5.36293 5.40155 5.43298 5.51729 5.57736 5.67228 5.69759 5.80088 5.95136 5.98860 6.03751 6.12922 6.18365 6.26538 6.29986 6.37186 6.45464 6.50021 6.61602 6.73950 6.77028 6.83411 6.94275 7.03080 7.17971 7.61799 7.70089 7.73183 7.77955 7.88350 8.30035 8.42670 9.26635 9.86798 10.55496 11.45373 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.003049 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.241262 B = 9181.783287 C = 9863.953716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.180 3.820 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.080 0.920 14 C 0.107 3.893 15 N -0.594 5.594 16 C 0.591 3.409 17 O -0.555 6.555 18 C -0.224 4.224 19 C 0.101 3.899 20 N -0.531 5.531 21 H 0.419 0.581 22 C -0.071 4.071 23 C 0.595 3.405 24 N -0.857 5.857 25 O -0.526 6.526 26 C -0.067 4.067 27 C 0.114 3.886 28 C -0.141 4.141 29 C 0.166 3.834 30 H 0.059 0.941 31 H 0.251 0.749 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.186 0.814 39 H 0.395 0.605 40 H 0.408 0.592 41 H 0.163 0.837 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -22.979 -1.337 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.055 3.945 11 C -0.173 4.173 12 C -0.134 4.134 13 H 0.098 0.902 14 C -0.016 4.016 15 N -0.326 5.326 16 C 0.381 3.619 17 O -0.434 6.434 18 C -0.234 4.234 19 C -0.040 4.040 20 N -0.126 5.126 21 H 0.257 0.743 22 C -0.181 4.181 23 C 0.382 3.618 24 N -0.421 5.421 25 O -0.402 6.402 26 C -0.093 4.093 27 C -0.009 4.009 28 C -0.182 4.182 29 C 0.058 3.942 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.203 0.797 39 H 0.222 0.778 40 H 0.240 0.760 41 H 0.180 0.820 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.678 -22.653 -1.318 23.653 hybrid contribution -0.501 0.627 -0.140 0.815 sum -7.179 -22.026 -1.458 23.212 Atomic orbital electron populations 1.69981 1.04874 1.24845 1.57120 1.24798 0.95668 0.97546 1.02488 0.86142 0.78651 0.83831 0.77421 1.21752 1.21894 1.20691 1.19057 0.90768 0.82519 1.42910 0.90520 1.44932 1.01421 1.00257 1.85960 1.21170 0.84349 0.88284 1.00701 1.22738 0.95578 0.99460 0.99536 1.21879 0.97919 0.92841 1.00732 0.90159 1.21458 1.01964 0.97524 0.80657 1.47650 1.33924 1.40928 1.10069 1.17295 0.79753 0.79200 0.85684 1.90747 1.68329 1.70329 1.14024 1.19638 0.99877 1.08398 0.95464 1.22325 0.93034 0.93333 0.95337 1.41676 1.21827 1.38806 1.10282 0.74326 1.19959 0.99129 1.11406 0.87651 1.17047 0.80676 0.77919 0.86201 1.43707 1.26350 1.53354 1.18678 1.90919 1.51806 1.62850 1.34580 1.21469 0.96784 0.95445 0.95610 1.21703 0.88197 0.91407 0.99578 1.22472 1.02566 0.93138 1.00015 1.21178 0.94539 0.86056 0.92411 0.92290 0.93906 0.93661 0.94481 0.92654 0.92573 0.91991 0.88696 0.79659 0.77769 0.76016 0.81975 0.89636 0.91648 0.91540 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.38 55.49 0.58 -26.69 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.31 29.56 -169.99 -5.02 17.28 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.19 10.30 -15.05 -0.15 -6.35 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.05 2.90 -161.78 -0.47 -15.52 16 10 C 0.18 4.38 5.12 -2.75 -0.01 4.37 16 11 C -0.13 -2.56 5.90 -25.20 -0.15 -2.70 16 12 C -0.11 -1.95 2.89 -90.54 -0.26 -2.21 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 14 C 0.11 1.50 4.53 -5.44 -0.02 1.47 16 15 N -0.59 -8.96 2.85 -176.32 -0.50 -9.46 16 16 C 0.59 9.13 7.65 -12.54 -0.10 9.03 16 17 O -0.55 -10.11 16.51 5.27 0.09 -10.02 16 18 C -0.22 -2.73 5.60 -105.02 -0.59 -3.32 16 19 C 0.10 0.89 11.82 -16.50 -0.20 0.69 16 20 N -0.53 -3.24 5.91 -9.30 -0.05 -3.30 16 21 H 0.42 0.78 8.14 -40.82 -0.33 0.44 16 22 C -0.07 -0.66 6.99 -82.41 -0.58 -1.23 16 23 C 0.60 5.62 8.06 -12.79 -0.10 5.52 16 24 N -0.86 -3.92 8.87 30.29 0.27 -3.65 16 25 O -0.53 -7.24 17.69 5.21 0.09 -7.15 16 26 C -0.07 -0.76 8.14 -39.10 -0.32 -1.08 16 27 C 0.11 1.76 6.45 -3.77 -0.02 1.74 16 28 C -0.14 -2.61 5.25 -26.78 -0.14 -2.75 16 29 C 0.17 3.29 3.59 -66.19 -0.24 3.05 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 33 H 0.04 1.02 7.53 -51.93 -0.39 0.62 16 34 H 0.05 1.06 7.48 -51.93 -0.39 0.67 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.23 4.16 -51.93 -0.22 1.02 16 38 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.39 0.49 7.91 -40.82 -0.32 0.17 16 40 H 0.41 1.47 8.93 -40.82 -0.36 1.10 16 41 H 0.16 1.86 6.36 -52.48 -0.33 1.52 16 42 H 0.09 1.37 7.08 -51.93 -0.37 1.01 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.40 6.97 -51.93 -0.36 1.04 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -36.85 358.75 -8.57 -45.42 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.97 Total: 1.80 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.98 Total: 5.88 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.18 Total: -58.61 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.18 Total: -17.17 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.85 -8.57 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036897500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.941 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds