Wall clock time and date at job start Sat Apr 11 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38569 * 119.96676 * 2 1 4 4 C 1.38825 * 118.06729 * 179.97438 * 3 2 1 5 5 C 1.39722 * 117.89954 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.18158 * 179.97438 * 5 4 3 7 7 O 1.21523 * 120.00165 * 7.16243 * 6 5 4 8 8 N 1.34776 * 120.00277 * 187.15604 * 6 5 4 9 9 C 1.46843 * 120.40405 * 10.14588 * 8 6 5 10 10 C 1.53377 * 109.24371 * 127.76969 * 9 8 6 11 11 C 1.52784 * 108.81502 * 53.83920 * 10 9 8 12 12 H 1.08991 * 108.97003 * 56.92588 * 11 10 9 13 13 O 1.42604 * 111.10934 * 177.46696 * 11 10 9 14 14 C 1.43150 * 113.63342 * 183.60321 * 13 11 10 15 15 C 1.53189 * 109.69951 * 298.34662 * 14 13 11 16 16 N 1.47233 * 108.86950 * 51.22051 * 15 14 13 17 17 C 1.36939 * 121.32969 * 129.71141 * 16 15 14 18 18 H 1.07994 * 119.99871 * 210.66999 * 17 16 15 19 19 C 1.38813 * 119.99861 * 30.66734 * 17 16 15 20 20 N 1.31619 * 119.99758 * 10.46308 * 19 17 16 21 21 Si 1.86799 * 119.99803 * 190.45411 * 19 17 16 22 22 H 1.48498 * 109.47321 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46616 * 120.00423 * 21 19 17 24 24 H 1.48500 * 109.47103 * 240.00125 * 21 19 17 25 25 C 1.46867 * 117.36435 * 309.73893 * 16 15 14 26 26 H 1.09002 * 109.65429 * 292.34311 * 25 16 15 27 27 C 1.47123 * 120.41348 * 190.16831 * 8 6 5 28 28 N 1.32775 * 119.63341 * 0.27531 * 5 4 3 29 29 N 1.28350 * 122.03038 * 359.39674 * 28 5 4 30 30 H 1.09003 * 109.46973 * 90.00090 * 1 2 3 31 31 H 1.08993 * 109.47220 * 209.99498 * 1 2 3 32 32 H 1.08991 * 109.47222 * 330.00269 * 1 2 3 33 33 H 1.07998 * 120.96741 * 0.02803 * 3 2 1 34 34 H 1.08003 * 121.04796 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.50993 * 247.70014 * 9 8 6 36 36 H 1.08992 * 109.51310 * 7.84152 * 9 8 6 37 37 H 1.08995 * 109.57885 * 294.03238 * 10 9 8 38 38 H 1.09003 * 109.57205 * 173.63511 * 10 9 8 39 39 H 1.09001 * 109.42173 * 58.40250 * 14 13 11 40 40 H 1.08994 * 109.42497 * 178.28698 * 14 13 11 41 41 H 1.09004 * 109.58398 * 170.97087 * 15 14 13 42 42 H 1.09002 * 109.58340 * 291.38257 * 15 14 13 43 43 H 0.97007 * 119.99447 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.72873 * 113.54942 * 27 8 6 45 45 H 1.08997 * 109.76419 * 352.89572 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5867 1.1544 0.0005 5 6 4.1992 -0.1014 0.0005 6 6 5.6767 -0.2094 0.0005 7 8 6.3589 0.7877 0.1318 8 7 6.2644 -1.4135 -0.1449 9 6 5.4687 -2.5879 -0.5241 10 6 6.1169 -3.2677 -1.7367 11 6 7.5812 -3.5600 -1.4133 12 1 7.6297 -4.1741 -0.5141 13 8 8.2176 -4.2465 -2.4891 14 6 9.5711 -4.6202 -2.2106 15 6 10.4117 -3.3649 -1.9573 16 7 9.7344 -2.5340 -0.9480 17 6 10.4031 -2.0591 0.1486 18 1 9.8748 -1.9029 1.0774 19 6 11.7601 -1.7786 0.0662 20 7 12.3604 -1.7696 -1.1051 21 14 12.7342 -1.4136 1.6178 22 1 11.8336 -1.4862 2.7963 23 1 13.8230 -2.4126 1.7651 24 1 13.3205 -0.0524 1.5254 25 6 8.3127 -2.2349 -1.1635 26 1 8.2022 -1.5856 -2.0320 27 6 7.7110 -1.5677 0.0748 28 7 3.4497 -1.1974 -0.0056 29 7 2.1673 -1.1451 -0.0001 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5137 33 1 1.6745 2.1444 0.0005 34 1 4.1741 2.0608 0.0002 35 1 5.4333 -3.2885 0.3101 36 1 4.4567 -2.2747 -0.7804 37 1 6.0586 -2.6060 -2.6008 38 1 5.5972 -4.2011 -1.9531 39 1 9.5966 -5.2580 -1.3270 40 1 9.9795 -5.1642 -3.0622 41 1 11.3969 -3.6528 -1.5902 42 1 10.5155 -2.8014 -2.8845 43 1 13.3086 -1.5732 -1.1626 44 1 7.8856 -2.1925 0.9508 45 1 8.1675 -0.5892 0.2239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:24 Heat of formation + Delta-G solvation = 30.448401 kcal Electronic energy + Delta-G solvation = -29417.018751 eV Core-core repulsion = 25436.915499 eV Total energy + Delta-G solvation = -3980.103252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58813 -39.86624 -38.49681 -36.14925 -34.74513 -34.36981 -33.35101 -31.76839 -31.35447 -29.92326 -28.83879 -27.00896 -25.82264 -24.83876 -23.80348 -23.49478 -22.05393 -21.49137 -20.00803 -19.53689 -18.20108 -17.21390 -16.68671 -16.25388 -15.94577 -15.80921 -15.32620 -15.08516 -14.86526 -14.63010 -14.51897 -13.88606 -13.76780 -13.62415 -13.59514 -13.21318 -13.03559 -12.94568 -12.81614 -12.66795 -12.41515 -11.95832 -11.41427 -11.22630 -10.97997 -10.93289 -10.81518 -10.61942 -10.51814 -10.22792 -10.19396 -10.06830 -10.04469 -9.97397 -9.63810 -9.43738 -8.93175 -8.54329 -8.36673 -6.66967 -5.83037 -3.32809 0.17171 0.42621 2.54460 2.90896 3.35092 3.39580 3.42958 3.44683 3.55092 3.99762 4.16686 4.29258 4.38910 4.44125 4.56725 4.61458 5.02893 5.07818 5.10673 5.23662 5.34570 5.37467 5.42828 5.49218 5.54718 5.62178 5.71807 5.78532 5.82924 5.91000 5.99675 6.16331 6.19028 6.22805 6.33977 6.37745 6.52544 6.65052 6.72314 6.89645 7.16272 7.50375 7.54615 7.72183 7.94731 8.07832 8.28658 8.36009 9.11770 9.73430 10.33264 11.24756 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003408 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.463335 B = 8213.752627 C = 9446.259811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.081 3.919 3 C -0.122 4.122 4 C -0.061 4.061 5 C 0.027 3.973 6 C 0.569 3.431 7 O -0.526 6.526 8 N -0.586 5.586 9 C 0.086 3.914 10 C -0.124 4.124 11 C 0.076 3.924 12 H 0.052 0.948 13 O -0.389 6.389 14 C 0.038 3.962 15 C 0.144 3.856 16 N -0.588 5.588 17 C -0.258 4.258 18 H 0.071 0.929 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.138 3.862 26 H 0.038 0.962 27 C 0.122 3.878 28 N -0.200 5.200 29 N -0.248 5.248 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.028 0.972 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.257 1.896 0.953 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.151 4.151 4 C -0.090 4.090 5 C -0.118 4.118 6 C 0.353 3.647 7 O -0.401 6.401 8 N -0.318 5.318 9 C -0.037 4.037 10 C -0.163 4.163 11 C 0.016 3.984 12 H 0.070 0.930 13 O -0.308 6.308 14 C -0.040 4.040 15 C 0.018 3.982 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.215 1.215 25 C 0.030 3.970 26 H 0.055 0.945 27 C 0.001 3.999 28 N -0.046 5.046 29 N -0.092 5.092 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.182 0.818 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.804 0.791 0.844 21.834 hybrid contribution 1.011 1.734 0.875 2.190 sum -20.792 2.525 1.719 21.016 Atomic orbital electron populations 1.20738 0.87122 1.04336 1.03910 1.23061 0.99290 0.90510 0.93385 1.22329 0.94216 1.00175 0.98356 1.22469 0.95035 0.99263 0.92274 1.23003 0.96705 0.91997 1.00133 1.17589 0.84965 0.83887 0.78236 1.90824 1.63298 1.35653 1.50332 1.48141 1.09898 1.07976 1.65756 1.22750 0.97280 0.86896 0.96781 1.21906 0.94723 1.01145 0.98528 1.22471 0.91651 0.94423 0.89848 0.92992 1.87747 1.26691 1.76295 1.40107 1.23341 0.82469 0.98566 0.99591 1.21407 0.96081 0.88492 0.92173 1.43966 1.04197 1.57607 1.25484 1.19151 0.91924 1.38850 0.88809 0.91184 1.25183 0.98331 0.99048 0.96524 1.69992 1.10314 1.52190 1.22023 0.86184 0.80017 0.77701 0.82668 1.20110 1.21519 1.21501 1.21298 0.86938 0.93384 0.95382 0.94468 1.21887 0.76245 1.03605 0.98164 1.73238 0.99297 1.24950 1.07094 1.73127 1.01440 1.24790 1.09840 0.89478 0.89638 0.90043 0.82537 0.81829 0.91114 0.84791 0.91274 0.90168 0.94157 0.90137 0.88769 0.95413 0.93514 0.90473 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.19 36.01 0.37 -0.10 16 2 C 0.08 0.68 6.87 -82.32 -0.57 0.12 16 3 C -0.12 -0.91 9.86 -39.24 -0.39 -1.30 16 4 C -0.06 -0.64 9.73 -38.81 -0.38 -1.02 16 5 C 0.03 0.37 6.66 -82.84 -0.55 -0.18 16 6 C 0.57 9.64 7.64 -12.19 -0.09 9.54 16 7 O -0.53 -10.37 15.85 5.35 0.08 -10.29 16 8 N -0.59 -10.04 2.98 -173.69 -0.52 -10.56 16 9 C 0.09 1.25 5.80 -3.66 -0.02 1.23 16 10 C -0.12 -1.93 5.82 -26.65 -0.16 -2.08 16 11 C 0.08 1.45 2.47 -26.63 -0.07 1.38 16 12 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 13 O -0.39 -7.97 10.49 -35.23 -0.37 -8.34 16 14 C 0.04 0.77 6.96 37.26 0.26 1.03 16 15 C 0.14 3.49 5.37 -3.54 -0.02 3.47 16 16 N -0.59 -14.84 3.03 -164.45 -0.50 -15.33 16 17 C -0.26 -6.94 8.81 -15.06 -0.13 -7.08 16 18 H 0.07 1.83 6.34 -52.49 -0.33 1.50 16 19 C 0.01 0.23 5.08 -17.43 -0.09 0.15 16 20 N -0.90 -26.00 11.11 55.49 0.62 -25.38 16 21 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.14 3.02 3.02 -67.52 -0.20 2.82 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 27 C 0.12 2.46 4.53 -3.71 -0.02 2.44 16 28 N -0.20 -2.65 7.34 33.32 0.24 -2.40 16 29 N -0.25 -2.90 11.43 33.63 0.38 -2.52 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 33 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.16 1.54 7.74 -52.48 -0.41 1.13 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.14 1.85 4.15 -120.07 -0.50 1.35 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.09 2.47 6.31 -51.93 -0.33 2.14 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.08 1.54 7.35 -51.93 -0.38 1.16 16 45 H 0.10 2.35 6.83 -51.93 -0.35 1.99 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -32.79 356.51 -8.27 -41.06 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.51 Total: 1.34 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -2.05 Total: 10.43 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.23 Total: -56.19 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.28 Total: -18.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.79 -8.27 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.504 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds