Wall clock time and date at job start Sat Apr 11 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38569 * 119.96676 * 2 1 4 4 C 1.38825 * 118.06729 * 179.97438 * 3 2 1 5 5 C 1.39722 * 117.89954 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.18158 * 179.97438 * 5 4 3 7 7 O 1.21523 * 120.00165 * 7.16243 * 6 5 4 8 8 N 1.34776 * 120.00277 * 187.15604 * 6 5 4 9 9 C 1.46843 * 120.40405 * 10.14588 * 8 6 5 10 10 C 1.53377 * 109.24371 * 127.76969 * 9 8 6 11 11 C 1.52784 * 108.81502 * 53.83920 * 10 9 8 12 12 H 1.08991 * 108.97003 * 56.92588 * 11 10 9 13 13 O 1.42604 * 111.10934 * 177.46696 * 11 10 9 14 14 C 1.43150 * 113.63342 * 183.60321 * 13 11 10 15 15 C 1.53189 * 109.69951 * 298.34662 * 14 13 11 16 16 N 1.47233 * 108.86950 * 51.22051 * 15 14 13 17 17 C 1.36939 * 121.32969 * 129.71141 * 16 15 14 18 18 H 1.07994 * 119.99871 * 210.66999 * 17 16 15 19 19 C 1.38813 * 119.99861 * 30.66734 * 17 16 15 20 20 N 1.31619 * 119.99758 * 10.46308 * 19 17 16 21 21 Si 1.86799 * 119.99803 * 190.45411 * 19 17 16 22 22 H 1.48498 * 109.47321 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46616 * 120.00423 * 21 19 17 24 24 H 1.48500 * 109.47103 * 240.00125 * 21 19 17 25 25 C 1.46867 * 117.36435 * 309.73893 * 16 15 14 26 26 H 1.09002 * 109.65429 * 292.34311 * 25 16 15 27 27 C 1.47123 * 120.41348 * 190.16831 * 8 6 5 28 28 N 1.32775 * 119.63341 * 0.27531 * 5 4 3 29 29 N 1.28350 * 122.03038 * 359.39674 * 28 5 4 30 30 H 1.09003 * 109.46973 * 90.00090 * 1 2 3 31 31 H 1.08993 * 109.47220 * 209.99498 * 1 2 3 32 32 H 1.08991 * 109.47222 * 330.00269 * 1 2 3 33 33 H 1.07998 * 120.96741 * 0.02803 * 3 2 1 34 34 H 1.08003 * 121.04796 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.50993 * 247.70014 * 9 8 6 36 36 H 1.08992 * 109.51310 * 7.84152 * 9 8 6 37 37 H 1.08995 * 109.57885 * 294.03238 * 10 9 8 38 38 H 1.09003 * 109.57205 * 173.63511 * 10 9 8 39 39 H 1.09001 * 109.42173 * 58.40250 * 14 13 11 40 40 H 1.08994 * 109.42497 * 178.28698 * 14 13 11 41 41 H 1.09004 * 109.58398 * 170.97087 * 15 14 13 42 42 H 1.09002 * 109.58340 * 291.38257 * 15 14 13 43 43 H 0.97007 * 119.99447 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.72873 * 113.54942 * 27 8 6 45 45 H 1.08997 * 109.76419 * 352.89572 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5867 1.1544 0.0005 5 6 4.1992 -0.1014 0.0005 6 6 5.6767 -0.2094 0.0005 7 8 6.3589 0.7877 0.1318 8 7 6.2644 -1.4135 -0.1449 9 6 5.4687 -2.5879 -0.5241 10 6 6.1169 -3.2677 -1.7367 11 6 7.5812 -3.5600 -1.4133 12 1 7.6297 -4.1741 -0.5141 13 8 8.2176 -4.2465 -2.4891 14 6 9.5711 -4.6202 -2.2106 15 6 10.4117 -3.3649 -1.9573 16 7 9.7344 -2.5340 -0.9480 17 6 10.4031 -2.0591 0.1486 18 1 9.8748 -1.9029 1.0774 19 6 11.7601 -1.7786 0.0662 20 7 12.3604 -1.7696 -1.1051 21 14 12.7342 -1.4136 1.6178 22 1 11.8336 -1.4862 2.7963 23 1 13.8230 -2.4126 1.7651 24 1 13.3205 -0.0524 1.5254 25 6 8.3127 -2.2349 -1.1635 26 1 8.2022 -1.5856 -2.0320 27 6 7.7110 -1.5677 0.0748 28 7 3.4497 -1.1974 -0.0056 29 7 2.1673 -1.1451 -0.0001 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5137 33 1 1.6745 2.1444 0.0005 34 1 4.1741 2.0608 0.0002 35 1 5.4333 -3.2885 0.3101 36 1 4.4567 -2.2747 -0.7804 37 1 6.0586 -2.6060 -2.6008 38 1 5.5972 -4.2011 -1.9531 39 1 9.5966 -5.2580 -1.3270 40 1 9.9795 -5.1642 -3.0622 41 1 11.3969 -3.6528 -1.5902 42 1 10.5155 -2.8014 -2.8845 43 1 13.3086 -1.5732 -1.1626 44 1 7.8856 -2.1925 0.9508 45 1 8.1675 -0.5892 0.2239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:23 Heat of formation + Delta-G solvation = 7.550721 kcal Electronic energy + Delta-G solvation = -29418.011669 eV Core-core repulsion = 25436.915499 eV Total energy + Delta-G solvation = -3981.096170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51322 -41.24851 -40.02360 -37.61098 -36.57238 -35.21773 -34.19512 -33.43283 -33.05141 -31.50155 -29.73244 -28.73421 -27.10051 -26.08838 -25.35129 -24.43551 -23.59324 -22.93810 -21.61260 -21.03848 -19.25826 -18.76465 -18.07936 -17.56107 -17.24695 -16.90814 -16.78342 -16.65233 -16.25716 -15.99833 -15.80166 -15.49480 -15.27685 -14.89192 -14.73133 -14.60418 -14.45262 -14.05183 -13.99111 -13.64955 -13.36160 -13.14009 -13.00237 -12.93087 -12.87698 -12.48622 -12.42106 -12.19298 -12.02251 -11.94960 -11.82860 -11.35874 -11.29662 -11.10406 -10.82595 -10.75318 -10.58761 -10.51100 -9.82058 -8.72273 -7.93082 -5.46688 -0.68656 -0.32064 1.42945 1.44347 1.44663 1.54807 1.63147 2.43598 2.44789 2.57760 2.88226 3.21889 3.24262 3.37716 3.42259 3.58750 3.75673 3.79858 3.98693 3.99601 4.06781 4.14547 4.19534 4.37247 4.49367 4.53618 4.55563 4.58158 4.65471 4.69136 4.81898 4.82944 4.90049 4.94817 5.00601 5.05401 5.09640 5.12469 5.25276 5.33543 5.43777 5.53022 5.58993 6.17461 6.24690 6.32613 6.77853 7.03251 7.42645 7.68589 8.26317 9.13116 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003408 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.463335 B = 8213.752627 C = 9446.259811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.085 3.915 3 C -0.098 4.098 4 C -0.071 4.071 5 C 0.006 3.994 6 C 0.566 3.434 7 O -0.565 6.565 8 N -0.590 5.590 9 C 0.090 3.910 10 C -0.115 4.115 11 C 0.081 3.919 12 H 0.058 0.942 13 O -0.393 6.393 14 C 0.050 3.950 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.263 4.263 18 H 0.074 0.926 19 C -0.046 4.046 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.294 1.294 25 C 0.136 3.864 26 H 0.005 0.995 27 C 0.137 3.863 28 N -0.215 5.215 29 N -0.271 5.271 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.205 0.795 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.071 0.929 42 H -0.004 1.004 43 H 0.252 0.748 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.036 1.689 1.777 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.057 4.057 3 C -0.126 4.126 4 C -0.099 4.099 5 C -0.140 4.140 6 C 0.353 3.647 7 O -0.444 6.444 8 N -0.321 5.321 9 C -0.031 4.031 10 C -0.154 4.154 11 C 0.022 3.978 12 H 0.076 0.924 13 O -0.312 6.312 14 C -0.027 4.027 15 C 0.023 3.977 16 N -0.330 5.330 17 C -0.392 4.392 18 H 0.092 0.908 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.221 1.221 25 C 0.029 3.971 26 H 0.023 0.977 27 C 0.015 3.985 28 N -0.061 5.061 29 N -0.115 5.115 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.222 0.778 34 H 0.186 0.814 35 H 0.103 0.897 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.637 0.555 1.668 25.697 hybrid contribution 2.007 1.892 0.587 2.820 sum -23.630 2.447 2.256 23.863 Atomic orbital electron populations 1.20930 0.83946 1.05803 1.05270 1.23771 1.01206 0.89868 0.90898 1.22832 0.92672 1.01848 0.95267 1.22643 0.96652 0.98134 0.92499 1.22526 0.94405 0.93768 1.03279 1.18139 0.86679 0.83013 0.76891 1.90786 1.64753 1.36807 1.52009 1.48187 1.08596 1.09257 1.66054 1.22948 0.97331 0.86053 0.96811 1.21921 0.92347 1.02490 0.98617 1.22509 0.93132 0.92226 0.89965 0.92447 1.87754 1.26479 1.76167 1.40768 1.23215 0.81802 0.96376 1.01353 1.21267 0.96143 0.89904 0.90391 1.44250 1.05543 1.57993 1.25206 1.19468 0.92241 1.37960 0.89562 0.90795 1.25957 0.99379 0.99515 0.99298 1.70154 1.10261 1.53695 1.23954 0.85178 0.78590 0.76938 0.79611 1.18903 1.21107 1.22108 1.21402 0.85862 0.94960 0.94916 0.97737 1.21438 0.78375 1.01385 0.97322 1.73028 1.00255 1.25023 1.07764 1.73073 1.00567 1.26690 1.11164 0.87887 0.89797 0.87012 0.77790 0.81437 0.89717 0.83298 0.92099 0.87102 0.93129 0.87236 0.91061 0.98570 0.93911 0.90316 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 71.24 0.73 0.26 16 2 C 0.09 1.13 6.87 42.59 0.29 1.43 16 3 C -0.10 -1.08 9.86 22.49 0.22 -0.86 16 4 C -0.07 -1.36 9.73 22.77 0.22 -1.14 16 5 C 0.01 0.15 6.66 41.99 0.28 0.43 16 6 C 0.57 19.79 7.64 86.88 0.66 20.46 16 7 O -0.57 -23.51 15.85 -3.79 -0.06 -23.57 16 8 N -0.59 -20.68 2.98 -821.71 -2.45 -23.13 16 9 C 0.09 2.54 5.80 86.44 0.50 3.05 16 10 C -0.12 -3.42 5.82 30.65 0.18 -3.24 16 11 C 0.08 3.07 2.47 30.66 0.08 3.14 16 12 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 13 O -0.39 -15.75 10.49 -148.98 -1.56 -17.32 16 14 C 0.05 2.01 6.96 72.05 0.50 2.51 16 15 C 0.15 7.50 5.37 86.30 0.46 7.96 16 16 N -0.60 -31.78 3.03 -674.20 -2.04 -33.82 16 17 C -0.26 -14.62 8.81 84.03 0.74 -13.88 16 18 H 0.07 3.98 6.34 -2.91 -0.02 3.96 16 19 C -0.05 -2.59 5.08 84.86 0.43 -2.16 16 20 N -0.94 -56.22 11.11 21.65 0.24 -55.98 16 21 Si 0.97 45.66 29.57 68.60 2.03 47.68 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 C 0.14 6.21 3.02 45.06 0.14 6.34 16 26 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 27 C 0.14 5.79 4.53 86.26 0.39 6.18 16 28 N -0.22 -5.41 7.34 -48.49 -0.36 -5.77 16 29 N -0.27 -5.71 11.43 -47.53 -0.54 -6.26 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 -0.10 8.09 -2.39 -0.02 -0.12 16 33 H 0.21 0.27 8.06 -2.91 -0.02 0.24 16 34 H 0.17 3.01 7.74 -2.91 -0.02 2.98 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.15 3.93 4.15 -90.52 -0.38 3.55 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.07 3.90 6.31 -2.38 -0.02 3.89 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 44 H 0.08 3.24 7.35 -2.38 -0.02 3.22 16 45 H 0.07 3.39 6.83 -2.39 -0.02 3.38 16 Total: -1.00 -76.23 356.51 1.73 -74.50 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.65 Total: 13.18 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 5.82 Total: 30.48 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -5.15 Total: -124.96 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.62 Total: -40.88 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.23 1.73 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.051 kcal (2) G-P(sol) polarization free energy of solvation -76.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds