Wall clock time and date at job start Sat Apr 11 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32222 * 120.50884 * 2 1 4 4 C 1.31906 * 121.14221 * 180.02562 * 3 2 1 5 5 N 1.31755 * 122.19466 * 0.02562 * 4 3 2 6 6 C 1.32753 * 120.87296 * 359.68232 * 5 4 3 7 7 O 1.35272 * 120.61475 * 180.31267 * 6 5 4 8 8 C 1.39768 * 120.51107 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.97567 * 359.95338 * 8 2 1 10 10 O 1.21584 * 119.99780 * 90.00446 * 9 8 2 11 11 N 1.34780 * 119.99813 * 269.99465 * 9 8 2 12 12 C 1.46595 * 119.68070 * 0.03358 * 11 9 8 13 13 C 1.53963 * 110.56760 * 227.79624 * 12 11 9 14 14 C 1.51811 * 107.28167 * 308.72968 * 13 12 11 15 15 H 1.09000 * 109.29403 * 306.56606 * 14 13 12 16 16 C 1.55676 * 107.48489 * 65.12393 * 14 13 12 17 17 H 1.08996 * 112.49115 * 50.67533 * 16 14 13 18 18 C 1.53743 * 100.09888 * 168.92795 * 16 14 13 19 19 C 1.55297 * 101.83998 * 320.73343 * 18 16 14 20 20 N 1.45459 * 117.16836 * 181.63679 * 14 13 12 21 21 C 1.36945 * 126.40667 * 31.14213 * 20 14 13 22 22 H 1.08000 * 119.99441 * 359.71550 * 21 20 14 23 23 C 1.38811 * 120.00031 * 179.71408 * 21 20 14 24 24 N 1.31619 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46722 * 90.00437 * 25 23 21 27 27 H 1.48497 * 109.47157 * 210.00127 * 25 23 21 28 28 H 1.48494 * 109.47346 * 330.00290 * 25 23 21 29 29 C 1.47715 * 119.68035 * 180.02562 * 11 9 8 30 30 H 1.09004 * 109.47139 * 269.97845 * 1 2 3 31 31 H 1.09004 * 109.47506 * 29.97404 * 1 2 3 32 32 H 1.08999 * 109.47437 * 149.97775 * 1 2 3 33 33 H 1.07995 * 118.90143 * 180.02562 * 4 3 2 34 34 H 0.96708 * 113.99574 * 270.25953 * 7 6 5 35 35 H 1.08996 * 109.26046 * 348.07299 * 12 11 9 36 36 H 1.08996 * 109.26084 * 107.55583 * 12 11 9 37 37 H 1.09001 * 109.88133 * 68.40744 * 13 12 11 38 38 H 1.08998 * 109.87706 * 189.41377 * 13 12 11 39 39 H 1.09000 * 110.95222 * 202.60599 * 18 16 14 40 40 H 1.08998 * 110.96074 * 78.86951 * 18 16 14 41 41 H 1.09001 * 109.91882 * 263.13411 * 19 18 16 42 42 H 1.08998 * 109.91870 * 141.82908 * 19 18 16 43 43 H 0.96998 * 120.00243 * 179.97438 * 24 23 21 44 44 H 1.09010 * 110.06869 * 8.75789 * 29 11 9 45 45 H 1.08997 * 110.07337 * 247.18469 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0466 -0.0015 6 6 3.6233 -1.1435 0.0042 7 8 4.3618 -2.2769 0.0095 8 6 2.2166 -1.2041 -0.0005 9 6 1.5123 -2.5006 -0.0001 10 8 1.2215 -3.0347 -1.0529 11 7 1.1915 -3.0928 1.1674 12 6 1.5452 -2.4422 2.4326 13 6 2.2158 -3.4461 3.3880 14 6 1.3145 -4.6652 3.4665 15 1 0.3058 -4.3507 3.7343 16 6 1.2919 -5.3219 2.0552 17 1 2.2926 -5.4855 1.6555 18 6 0.5987 -6.6531 2.3884 19 6 1.2341 -7.0088 3.7600 20 7 1.7312 -5.7435 4.3493 21 6 2.4446 -5.6132 5.5110 22 1 2.7562 -4.6351 5.8464 23 6 2.7671 -6.7383 6.2573 24 7 2.3877 -7.9304 5.8483 25 14 3.7408 -6.5605 7.8415 26 1 2.8048 -6.3790 8.9801 27 1 4.5563 -7.7820 8.0611 28 1 4.6353 -5.3794 7.7429 29 6 0.4869 -4.3910 1.1596 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 4.0087 2.1049 -0.0001 34 1 4.5797 -2.6084 -0.8725 35 1 2.2330 -1.6203 2.2343 36 1 0.6419 -2.0503 2.9001 37 1 3.1949 -3.7286 3.0013 38 1 2.3224 -3.0015 4.3775 39 1 0.8329 -7.4120 1.6419 40 1 -0.4790 -6.5189 2.4811 41 1 2.0625 -7.7025 3.6168 42 1 0.4830 -7.4528 4.4133 43 1 2.6134 -8.7166 6.3696 44 1 0.4476 -4.7893 0.1456 45 1 -0.5217 -4.2716 1.5551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036796325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:45 Heat of formation + Delta-G solvation = 12.199736 kcal Electronic energy + Delta-G solvation = -29741.236631 eV Core-core repulsion = 25760.342058 eV Total energy + Delta-G solvation = -3980.894573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78756 -40.03400 -38.30229 -38.00083 -35.47348 -34.53053 -32.86693 -32.14132 -31.63258 -29.76691 -28.98792 -28.10973 -25.70113 -24.77597 -23.39259 -23.11541 -22.44723 -20.39832 -20.01796 -19.32408 -19.20638 -18.35339 -17.57954 -16.62435 -16.33519 -16.19156 -15.39697 -15.14713 -14.81966 -14.51665 -14.48035 -14.01041 -13.86083 -13.72294 -13.34404 -13.18027 -13.09444 -12.89673 -12.61723 -12.50428 -12.37649 -11.72859 -11.54925 -11.52637 -11.47225 -10.88249 -10.81820 -10.76473 -10.69998 -10.28276 -10.14895 -9.97517 -9.93128 -9.72100 -9.70800 -9.63169 -9.46509 -8.66557 -8.64508 -6.86551 -5.73766 -3.07128 0.26021 0.54254 2.28654 2.84212 2.92816 3.29188 3.38354 3.43683 3.45392 3.59758 3.88439 4.14793 4.47051 4.58719 4.76761 4.90741 4.92479 5.02402 5.15831 5.19122 5.27541 5.30391 5.45883 5.51916 5.52719 5.54526 5.73474 5.82328 5.84359 5.95058 6.08658 6.12945 6.17708 6.26247 6.40722 6.46008 6.57110 6.60587 6.75277 7.01002 7.02617 7.26855 7.52684 7.58773 7.62724 7.78723 7.94405 8.21973 9.17127 9.80646 10.48119 11.38725 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.003528 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.166777 B = 7934.454906 C = 8742.763898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.224 3.776 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.540 5.540 6 C 0.399 3.601 7 O -0.465 6.465 8 C -0.243 4.243 9 C 0.576 3.424 10 O -0.537 6.537 11 N -0.589 5.589 12 C 0.115 3.885 13 C -0.128 4.128 14 C 0.169 3.831 15 H 0.021 0.979 16 C -0.124 4.124 17 H 0.081 0.919 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.414 0.586 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.252 0.748 44 H 0.092 0.908 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 15.220 -13.249 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 N -0.242 5.242 4 C 0.045 3.955 5 N -0.265 5.265 6 C 0.211 3.789 7 O -0.273 6.273 8 C -0.252 4.252 9 C 0.361 3.639 10 O -0.415 6.415 11 N -0.320 5.320 12 C -0.008 4.008 13 C -0.167 4.167 14 C 0.061 3.939 15 H 0.039 0.961 16 C -0.145 4.145 17 H 0.100 0.900 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.222 0.778 34 H 0.275 0.725 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.594 15.581 -12.996 20.454 hybrid contribution 0.505 -0.790 0.577 1.101 sum -2.089 14.791 -12.418 19.426 Atomic orbital electron populations 1.20928 0.86948 1.04884 1.04451 1.21798 0.97764 0.85956 0.86684 1.68301 1.10217 1.29308 1.16350 1.24973 0.86238 0.96155 0.88098 1.68085 1.42610 0.98669 1.17175 1.19408 0.85534 0.86056 0.87886 1.84686 1.72362 1.35740 1.34525 1.21782 0.95184 0.97049 1.11207 1.17613 0.78570 0.83480 0.84208 1.90803 1.54999 1.64786 1.30872 1.48264 1.56343 1.21947 1.05443 1.21757 0.99683 0.95420 0.83958 1.21927 0.99987 0.96348 0.98449 1.20736 0.95109 0.89116 0.88959 0.96132 1.22691 0.99666 0.95517 0.96579 0.90027 1.22723 0.99074 0.95630 1.00034 1.21535 0.97012 0.88229 0.87914 1.44199 1.63720 1.00894 1.23078 1.18985 1.26630 0.93256 0.96592 0.90432 1.24781 1.01049 0.95356 0.99126 1.69934 1.50519 0.97207 1.39178 0.86160 0.79564 0.76924 0.83370 1.21625 1.21682 1.20714 1.21721 0.94853 0.81201 1.01782 0.88765 0.88952 0.89633 0.77753 0.72484 0.91397 0.91366 0.91054 0.90561 0.92004 0.92293 0.92669 0.94354 0.93743 0.89000 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.85 36.00 0.35 -0.62 16 2 C 0.22 2.44 6.86 -81.85 -0.56 1.88 16 3 N -0.53 -5.50 10.36 -10.52 -0.11 -5.61 16 4 C 0.33 3.19 12.27 -92.09 -1.13 2.06 16 5 N -0.54 -6.34 10.45 -14.32 -0.15 -6.49 16 6 C 0.40 4.99 7.57 -16.18 -0.12 4.87 16 7 O -0.46 -5.65 13.10 -17.51 -0.23 -5.88 16 8 C -0.24 -3.03 3.66 -104.56 -0.38 -3.41 16 9 C 0.58 8.09 5.37 -12.47 -0.07 8.03 16 10 O -0.54 -8.82 16.46 5.29 0.09 -8.73 16 11 N -0.59 -8.18 3.00 -173.74 -0.52 -8.71 16 12 C 0.12 1.56 6.22 -3.49 -0.02 1.54 16 13 C -0.13 -2.19 5.48 -26.83 -0.15 -2.33 16 14 C 0.17 3.28 2.59 -67.67 -0.18 3.11 16 15 H 0.02 0.42 7.94 -51.93 -0.41 0.00 16 16 C -0.12 -2.13 2.86 -89.21 -0.26 -2.39 16 17 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 18 C -0.14 -2.43 6.53 -25.13 -0.16 -2.59 16 19 C 0.18 4.18 5.45 -1.91 -0.01 4.17 16 20 N -0.59 -14.58 3.35 -162.73 -0.54 -15.12 16 21 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16 22 H 0.08 2.01 7.21 -52.49 -0.38 1.64 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.69 10.44 55.49 0.58 -26.11 16 25 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.13 1.80 5.95 -3.78 -0.02 1.78 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.79 7.18 -51.93 -0.37 0.42 16 33 H 0.21 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.41 3.17 9.06 45.56 0.41 3.58 16 35 H 0.07 0.89 6.06 -51.93 -0.31 0.58 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 38 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 42 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.09 1.33 6.99 -51.92 -0.36 0.97 16 45 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -33.37 362.51 -8.93 -42.31 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.54 Total: 2.47 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -2.95 Total: 9.56 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.75 Total: -62.04 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.14 Total: -14.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.37 -8.93 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036796325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.508 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds